Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00180

Experiment: Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00180 and BPHYT_RS00185 are separated by 739 nucleotides BPHYT_RS00180: BPHYT_RS00180 - ligand-gated channel protein, at 47,404 to 48,183 _RS00180 BPHYT_RS00185: BPHYT_RS00185 - putative transcriptional regulator, at 48,923 to 50,053 _RS00185 Position (kb) 47 48 49Strain fitness (log2 ratio) -1 0 1 2at 46.471 kb on + strandat 46.567 kb on + strandat 46.567 kb on + strandat 46.603 kb on + strandat 46.603 kb on + strandat 46.604 kb on - strandat 46.604 kb on - strandat 46.604 kb on - strandat 46.604 kb on - strandat 46.789 kb on - strandat 46.789 kb on - strandat 46.789 kb on - strandat 46.833 kb on + strandat 46.834 kb on - strandat 46.853 kb on - strandat 46.858 kb on + strandat 46.858 kb on + strandat 46.858 kb on + strandat 46.859 kb on - strandat 46.859 kb on - strandat 46.859 kb on - strandat 46.859 kb on - strandat 46.983 kb on - strandat 47.004 kb on - strandat 47.074 kb on + strandat 47.075 kb on - strandat 47.094 kb on + strandat 47.094 kb on + strandat 47.094 kb on + strandat 47.094 kb on + strandat 47.115 kb on - strandat 47.115 kb on - strandat 47.115 kb on - strandat 47.117 kb on - strandat 47.117 kb on - strandat 47.135 kb on + strandat 47.136 kb on - strandat 47.156 kb on + strandat 47.157 kb on - strandat 47.175 kb on - strandat 47.239 kb on - strandat 47.276 kb on - strandat 47.288 kb on - strandat 47.328 kb on - strandat 47.459 kb on - strandat 47.459 kb on - strandat 47.583 kb on + strand, within BPHYT_RS00180at 47.609 kb on - strand, within BPHYT_RS00180at 47.609 kb on - strand, within BPHYT_RS00180at 47.610 kb on + strand, within BPHYT_RS00180at 47.725 kb on - strand, within BPHYT_RS00180at 47.725 kb on - strand, within BPHYT_RS00180at 47.899 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.001 kb on + strand, within BPHYT_RS00180at 48.002 kb on - strand, within BPHYT_RS00180at 48.002 kb on - strand, within BPHYT_RS00180at 48.002 kb on - strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.003 kb on + strand, within BPHYT_RS00180at 48.004 kb on - strand, within BPHYT_RS00180at 48.004 kb on - strand, within BPHYT_RS00180at 48.004 kb on - strand, within BPHYT_RS00180at 48.004 kb on - strand, within BPHYT_RS00180at 48.004 kb on - strand, within BPHYT_RS00180at 48.106 kb on + strandat 48.181 kb on + strandat 48.181 kb on + strandat 48.181 kb on + strandat 48.181 kb on + strandat 48.399 kb on - strandat 48.422 kb on - strandat 48.422 kb on - strandat 48.453 kb on + strandat 48.485 kb on + strandat 48.485 kb on + strandat 48.485 kb on + strandat 48.486 kb on - strandat 48.539 kb on + strandat 48.605 kb on - strandat 48.702 kb on + strandat 48.738 kb on + strandat 48.738 kb on + strandat 48.739 kb on - strandat 48.838 kb on - strandat 48.921 kb on - strandat 49.009 kb on + strandat 49.010 kb on - strandat 49.010 kb on - strandat 49.010 kb on - strandat 49.170 kb on - strand, within BPHYT_RS00185

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1 mM
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46,471 + -0.0
46,567 + +0.2
46,567 + -0.1
46,603 + -0.0
46,603 + +0.3
46,604 - +0.4
46,604 - -0.1
46,604 - +0.2
46,604 - -0.7
46,789 - -0.3
46,789 - +0.4
46,789 - -0.1
46,833 + +0.2
46,834 - -0.4
46,853 - -0.7
46,858 + -1.0
46,858 + -0.4
46,858 + -0.1
46,859 - -0.4
46,859 - -0.9
46,859 - -0.5
46,859 - -0.3
46,983 - -0.4
47,004 - -1.1
47,074 + -0.6
47,075 - -1.4
47,094 + -0.2
47,094 + +0.1
47,094 + -0.2
47,094 + -0.2
47,115 - -0.5
47,115 - +0.1
47,115 - -0.5
47,117 - -0.9
47,117 - -0.2
47,135 + -0.3
47,136 - +1.9
47,156 + +0.2
47,157 - +0.0
47,175 - +0.4
47,239 - -0.1
47,276 - -0.2
47,288 - +0.2
47,328 - -0.2
47,459 - +0.2
47,459 - -0.2
47,583 + BPHYT_RS00180 0.23 +0.5
47,609 - BPHYT_RS00180 0.26 +0.6
47,609 - BPHYT_RS00180 0.26 +0.7
47,610 + BPHYT_RS00180 0.26 +0.1
47,725 - BPHYT_RS00180 0.41 +0.5
47,725 - BPHYT_RS00180 0.41 +0.6
47,899 + BPHYT_RS00180 0.63 +0.8
48,001 + BPHYT_RS00180 0.77 +0.5
48,001 + BPHYT_RS00180 0.77 -0.1
48,001 + BPHYT_RS00180 0.77 -0.6
48,001 + BPHYT_RS00180 0.77 -0.4
48,001 + BPHYT_RS00180 0.77 +0.4
48,001 + BPHYT_RS00180 0.77 +0.2
48,002 - BPHYT_RS00180 0.77 +0.5
48,002 - BPHYT_RS00180 0.77 +0.1
48,002 - BPHYT_RS00180 0.77 -0.0
48,003 + BPHYT_RS00180 0.77 -0.4
48,003 + BPHYT_RS00180 0.77 +0.1
48,003 + BPHYT_RS00180 0.77 +0.1
48,003 + BPHYT_RS00180 0.77 -0.9
48,003 + BPHYT_RS00180 0.77 +0.1
48,003 + BPHYT_RS00180 0.77 -0.2
48,003 + BPHYT_RS00180 0.77 -0.7
48,004 - BPHYT_RS00180 0.77 -1.1
48,004 - BPHYT_RS00180 0.77 -0.8
48,004 - BPHYT_RS00180 0.77 -0.4
48,004 - BPHYT_RS00180 0.77 -0.1
48,004 - BPHYT_RS00180 0.77 +0.4
48,106 + -0.1
48,181 + +0.7
48,181 + +0.3
48,181 + -0.2
48,181 + -0.2
48,399 - +0.3
48,422 - +0.3
48,422 - +0.9
48,453 + +0.2
48,485 + +1.8
48,485 + +0.1
48,485 + +0.5
48,486 - -0.8
48,539 + +0.6
48,605 - -0.1
48,702 + -0.3
48,738 + -0.2
48,738 + +0.2
48,739 - +0.1
48,838 - -0.5
48,921 - -0.2
49,009 + -1.2
49,010 - -0.7
49,010 - -0.1
49,010 - +0.8
49,170 - BPHYT_RS00185 0.22 +0.3

Or see this region's nucleotide sequence