Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.968.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.966.1 and Xcc-8004.967.1 are separated by 124 nucleotidesXcc-8004.967.1 and Xcc-8004.968.1 are separated by 19 nucleotidesXcc-8004.968.1 and Xcc-8004.969.1 are separated by 93 nucleotidesXcc-8004.969.1 and Xcc-8004.970.1 are separated by 104 nucleotides Xcc-8004.966.1: Xcc-8004.966.1 - High-affinity choline uptake protein BetT, at 917,298 to 919,277 Xcc-8004.966.1 Xcc-8004.967.1: Xcc-8004.967.1 - Endonuclease/exonuclease/phosphatase family protein, at 919,402 to 920,169 Xcc-8004.967.1 Xcc-8004.968.1: Xcc-8004.968.1 - Periplasmic thiol:disulfide interchange protein DsbA, at 920,189 to 921,010 Xcc-8004.968.1 Xcc-8004.969.1: Xcc-8004.969.1 - Periplasmic thiol:disulfide interchange protein DsbA, at 921,104 to 921,754 Xcc-8004.969.1 Xcc-8004.970.1: Xcc-8004.970.1 - Probable cytochrome c2, at 921,859 to 922,656 Xcc-8004.970.1 Position (kb) 920 921 922Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 919.199 kb on + strandat 919.199 kb on + strandat 919.200 kb on - strandat 919.200 kb on - strandat 919.200 kb on - strandat 919.200 kb on - strandat 919.200 kb on - strandat 919.245 kb on + strandat 919.324 kb on + strandat 919.324 kb on + strandat 919.325 kb on - strandat 919.342 kb on + strandat 919.343 kb on - strandat 919.343 kb on - strandat 919.393 kb on - strandat 919.404 kb on - strandat 919.404 kb on - strandat 919.558 kb on + strand, within Xcc-8004.967.1at 919.558 kb on + strand, within Xcc-8004.967.1at 919.559 kb on - strand, within Xcc-8004.967.1at 919.559 kb on - strand, within Xcc-8004.967.1at 919.595 kb on + strand, within Xcc-8004.967.1at 919.595 kb on + strand, within Xcc-8004.967.1at 919.672 kb on + strand, within Xcc-8004.967.1at 919.907 kb on + strand, within Xcc-8004.967.1at 919.907 kb on + strand, within Xcc-8004.967.1at 919.908 kb on - strand, within Xcc-8004.967.1at 919.908 kb on - strand, within Xcc-8004.967.1at 919.908 kb on - strand, within Xcc-8004.967.1at 919.934 kb on + strand, within Xcc-8004.967.1at 919.934 kb on + strand, within Xcc-8004.967.1at 920.087 kb on + strand, within Xcc-8004.967.1at 920.087 kb on + strand, within Xcc-8004.967.1at 920.087 kb on + strand, within Xcc-8004.967.1at 920.087 kb on + strand, within Xcc-8004.967.1at 920.088 kb on - strand, within Xcc-8004.967.1at 920.088 kb on - strand, within Xcc-8004.967.1at 920.088 kb on - strand, within Xcc-8004.967.1at 920.088 kb on - strand, within Xcc-8004.967.1at 920.088 kb on - strand, within Xcc-8004.967.1at 920.088 kb on - strand, within Xcc-8004.967.1at 920.088 kb on - strand, within Xcc-8004.967.1at 920.097 kb on - strandat 920.175 kb on - strandat 920.175 kb on - strandat 920.175 kb on - strandat 920.175 kb on - strandat 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.274 kb on + strand, within Xcc-8004.968.1at 920.275 kb on - strand, within Xcc-8004.968.1at 920.275 kb on - strand, within Xcc-8004.968.1at 920.275 kb on - strand, within Xcc-8004.968.1at 920.406 kb on + strand, within Xcc-8004.968.1at 920.406 kb on + strand, within Xcc-8004.968.1at 920.406 kb on + strand, within Xcc-8004.968.1at 920.406 kb on + strand, within Xcc-8004.968.1at 920.407 kb on - strand, within Xcc-8004.968.1at 920.407 kb on - strand, within Xcc-8004.968.1at 920.407 kb on - strand, within Xcc-8004.968.1at 920.407 kb on - strand, within Xcc-8004.968.1at 920.415 kb on + strand, within Xcc-8004.968.1at 920.415 kb on + strand, within Xcc-8004.968.1at 920.490 kb on + strand, within Xcc-8004.968.1at 920.490 kb on + strand, within Xcc-8004.968.1at 920.490 kb on + strand, within Xcc-8004.968.1at 920.490 kb on + strand, within Xcc-8004.968.1at 920.491 kb on - strand, within Xcc-8004.968.1at 920.491 kb on - strand, within Xcc-8004.968.1at 920.538 kb on + strand, within Xcc-8004.968.1at 920.538 kb on + strand, within Xcc-8004.968.1at 920.539 kb on - strand, within Xcc-8004.968.1at 920.553 kb on + strand, within Xcc-8004.968.1at 920.553 kb on + strand, within Xcc-8004.968.1at 920.553 kb on + strand, within Xcc-8004.968.1at 920.553 kb on + strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.554 kb on - strand, within Xcc-8004.968.1at 920.589 kb on + strand, within Xcc-8004.968.1at 920.590 kb on - strand, within Xcc-8004.968.1at 920.590 kb on - strand, within Xcc-8004.968.1at 920.670 kb on + strand, within Xcc-8004.968.1at 920.671 kb on - strand, within Xcc-8004.968.1at 920.671 kb on - strand, within Xcc-8004.968.1at 920.671 kb on - strand, within Xcc-8004.968.1at 920.715 kb on + strand, within Xcc-8004.968.1at 921.096 kb on + strandat 921.144 kb on + strandat 921.145 kb on - strandat 921.171 kb on + strand, within Xcc-8004.969.1at 921.171 kb on + strand, within Xcc-8004.969.1at 921.172 kb on - strand, within Xcc-8004.969.1at 921.172 kb on - strand, within Xcc-8004.969.1at 921.172 kb on - strand, within Xcc-8004.969.1at 921.192 kb on + strand, within Xcc-8004.969.1at 921.192 kb on + strand, within Xcc-8004.969.1at 921.325 kb on - strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.333 kb on + strand, within Xcc-8004.969.1at 921.334 kb on - strand, within Xcc-8004.969.1at 921.334 kb on - strand, within Xcc-8004.969.1at 921.334 kb on - strand, within Xcc-8004.969.1at 921.453 kb on + strand, within Xcc-8004.969.1at 921.453 kb on + strand, within Xcc-8004.969.1at 921.454 kb on - strand, within Xcc-8004.969.1at 921.454 kb on - strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.516 kb on + strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.517 kb on - strand, within Xcc-8004.969.1at 921.627 kb on + strand, within Xcc-8004.969.1at 921.628 kb on - strand, within Xcc-8004.969.1at 921.628 kb on - strand, within Xcc-8004.969.1at 921.628 kb on - strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.654 kb on + strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.655 kb on - strand, within Xcc-8004.969.1at 921.785 kb on + strandat 921.785 kb on + strandat 921.785 kb on + strandat 921.935 kb on + strandat 921.935 kb on + strandat 921.993 kb on + strand, within Xcc-8004.970.1at 921.994 kb on - strand, within Xcc-8004.970.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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919,199 + -1.5
919,199 + +0.2
919,200 - -0.1
919,200 - -2.7
919,200 - -0.8
919,200 - -1.0
919,200 - +0.8
919,245 + +2.2
919,324 + -0.1
919,324 + -2.9
919,325 - +2.0
919,342 + +0.4
919,343 - +0.5
919,343 - +1.8
919,393 - -0.7
919,404 - -1.6
919,404 - +0.8
919,558 + Xcc-8004.967.1 0.20 -1.2
919,558 + Xcc-8004.967.1 0.20 +1.8
919,559 - Xcc-8004.967.1 0.20 -0.2
919,559 - Xcc-8004.967.1 0.20 +0.8
919,595 + Xcc-8004.967.1 0.25 -0.2
919,595 + Xcc-8004.967.1 0.25 -1.2
919,672 + Xcc-8004.967.1 0.35 -1.9
919,907 + Xcc-8004.967.1 0.66 +2.6
919,907 + Xcc-8004.967.1 0.66 -1.0
919,908 - Xcc-8004.967.1 0.66 -2.4
919,908 - Xcc-8004.967.1 0.66 -0.2
919,908 - Xcc-8004.967.1 0.66 -0.8
919,934 + Xcc-8004.967.1 0.69 -0.3
919,934 + Xcc-8004.967.1 0.69 -1.2
920,087 + Xcc-8004.967.1 0.89 -2.4
920,087 + Xcc-8004.967.1 0.89 +0.1
920,087 + Xcc-8004.967.1 0.89 -2.0
920,087 + Xcc-8004.967.1 0.89 +0.4
920,088 - Xcc-8004.967.1 0.89 -0.5
920,088 - Xcc-8004.967.1 0.89 -1.4
920,088 - Xcc-8004.967.1 0.89 -0.6
920,088 - Xcc-8004.967.1 0.89 -0.8
920,088 - Xcc-8004.967.1 0.89 -2.1
920,088 - Xcc-8004.967.1 0.89 -0.2
920,088 - Xcc-8004.967.1 0.89 +0.3
920,097 - +3.3
920,175 - +2.8
920,175 - -0.3
920,175 - -0.0
920,175 - +1.1
920,274 + Xcc-8004.968.1 0.10 -1.2
920,274 + Xcc-8004.968.1 0.10 +0.3
920,274 + Xcc-8004.968.1 0.10 -3.8
920,274 + Xcc-8004.968.1 0.10 -2.0
920,274 + Xcc-8004.968.1 0.10 -3.3
920,274 + Xcc-8004.968.1 0.10 -0.2
920,274 + Xcc-8004.968.1 0.10 -1.4
920,274 + Xcc-8004.968.1 0.10 -1.7
920,275 - Xcc-8004.968.1 0.10 -1.8
920,275 - Xcc-8004.968.1 0.10 -4.2
920,275 - Xcc-8004.968.1 0.10 -1.6
920,406 + Xcc-8004.968.1 0.26 -4.1
920,406 + Xcc-8004.968.1 0.26 -2.6
920,406 + Xcc-8004.968.1 0.26 -2.0
920,406 + Xcc-8004.968.1 0.26 -2.8
920,407 - Xcc-8004.968.1 0.27 -1.6
920,407 - Xcc-8004.968.1 0.27 -3.3
920,407 - Xcc-8004.968.1 0.27 -3.9
920,407 - Xcc-8004.968.1 0.27 -1.0
920,415 + Xcc-8004.968.1 0.27 -1.8
920,415 + Xcc-8004.968.1 0.27 -2.4
920,490 + Xcc-8004.968.1 0.37 -1.2
920,490 + Xcc-8004.968.1 0.37 -3.4
920,490 + Xcc-8004.968.1 0.37 -3.4
920,490 + Xcc-8004.968.1 0.37 -2.4
920,491 - Xcc-8004.968.1 0.37 -1.0
920,491 - Xcc-8004.968.1 0.37 -4.0
920,538 + Xcc-8004.968.1 0.42 -1.6
920,538 + Xcc-8004.968.1 0.42 -3.0
920,539 - Xcc-8004.968.1 0.43 -3.0
920,553 + Xcc-8004.968.1 0.44 -2.6
920,553 + Xcc-8004.968.1 0.44 -1.6
920,553 + Xcc-8004.968.1 0.44 +0.5
920,553 + Xcc-8004.968.1 0.44 -1.0
920,554 - Xcc-8004.968.1 0.44 -2.6
920,554 - Xcc-8004.968.1 0.44 -0.8
920,554 - Xcc-8004.968.1 0.44 -1.8
920,554 - Xcc-8004.968.1 0.44 +0.3
920,554 - Xcc-8004.968.1 0.44 -0.8
920,554 - Xcc-8004.968.1 0.44 -1.9
920,589 + Xcc-8004.968.1 0.49 -1.6
920,590 - Xcc-8004.968.1 0.49 -1.6
920,590 - Xcc-8004.968.1 0.49 -1.6
920,670 + Xcc-8004.968.1 0.59 -1.2
920,671 - Xcc-8004.968.1 0.59 -1.9
920,671 - Xcc-8004.968.1 0.59 -3.8
920,671 - Xcc-8004.968.1 0.59 -1.0
920,715 + Xcc-8004.968.1 0.64 -0.4
921,096 + +1.4
921,144 + -1.1
921,145 - -2.3
921,171 + Xcc-8004.969.1 0.10 +0.1
921,171 + Xcc-8004.969.1 0.10 -0.2
921,172 - Xcc-8004.969.1 0.10 -0.9
921,172 - Xcc-8004.969.1 0.10 -2.2
921,172 - Xcc-8004.969.1 0.10 +1.1
921,192 + Xcc-8004.969.1 0.14 +0.6
921,192 + Xcc-8004.969.1 0.14 +0.3
921,325 - Xcc-8004.969.1 0.34 -0.4
921,333 + Xcc-8004.969.1 0.35 -2.0
921,333 + Xcc-8004.969.1 0.35 +1.2
921,333 + Xcc-8004.969.1 0.35 -1.2
921,333 + Xcc-8004.969.1 0.35 +2.2
921,333 + Xcc-8004.969.1 0.35 -0.2
921,333 + Xcc-8004.969.1 0.35 -0.7
921,333 + Xcc-8004.969.1 0.35 +0.9
921,334 - Xcc-8004.969.1 0.35 -0.2
921,334 - Xcc-8004.969.1 0.35 -0.6
921,334 - Xcc-8004.969.1 0.35 +2.8
921,453 + Xcc-8004.969.1 0.54 +0.9
921,453 + Xcc-8004.969.1 0.54 -0.6
921,454 - Xcc-8004.969.1 0.54 +0.8
921,454 - Xcc-8004.969.1 0.54 +2.1
921,516 + Xcc-8004.969.1 0.63 +0.1
921,516 + Xcc-8004.969.1 0.63 +0.1
921,516 + Xcc-8004.969.1 0.63 -0.6
921,516 + Xcc-8004.969.1 0.63 +1.8
921,516 + Xcc-8004.969.1 0.63 -1.6
921,516 + Xcc-8004.969.1 0.63 +0.1
921,517 - Xcc-8004.969.1 0.63 +0.8
921,517 - Xcc-8004.969.1 0.63 -0.2
921,517 - Xcc-8004.969.1 0.63 -0.2
921,517 - Xcc-8004.969.1 0.63 -1.2
921,517 - Xcc-8004.969.1 0.63 -1.4
921,517 - Xcc-8004.969.1 0.63 +2.0
921,517 - Xcc-8004.969.1 0.63 +0.8
921,517 - Xcc-8004.969.1 0.63 +4.2
921,517 - Xcc-8004.969.1 0.63 +1.8
921,627 + Xcc-8004.969.1 0.80 +1.0
921,628 - Xcc-8004.969.1 0.80 +1.1
921,628 - Xcc-8004.969.1 0.80 +1.4
921,628 - Xcc-8004.969.1 0.80 +1.0
921,654 + Xcc-8004.969.1 0.84 -0.8
921,654 + Xcc-8004.969.1 0.84 -1.6
921,654 + Xcc-8004.969.1 0.84 +0.0
921,654 + Xcc-8004.969.1 0.84 -1.2
921,654 + Xcc-8004.969.1 0.84 -2.2
921,654 + Xcc-8004.969.1 0.84 -0.8
921,654 + Xcc-8004.969.1 0.84 -1.4
921,654 + Xcc-8004.969.1 0.84 -2.0
921,654 + Xcc-8004.969.1 0.84 -1.0
921,654 + Xcc-8004.969.1 0.84 +0.7
921,654 + Xcc-8004.969.1 0.84 +2.3
921,655 - Xcc-8004.969.1 0.85 -0.8
921,655 - Xcc-8004.969.1 0.85 -0.2
921,655 - Xcc-8004.969.1 0.85 +0.6
921,655 - Xcc-8004.969.1 0.85 -2.9
921,655 - Xcc-8004.969.1 0.85 -0.2
921,655 - Xcc-8004.969.1 0.85 -1.6
921,655 - Xcc-8004.969.1 0.85 -2.0
921,655 - Xcc-8004.969.1 0.85 -0.8
921,655 - Xcc-8004.969.1 0.85 +0.2
921,655 - Xcc-8004.969.1 0.85 -0.7
921,785 + +0.8
921,785 + +0.9
921,785 + +3.8
921,935 + +0.0
921,935 + -0.1
921,993 + Xcc-8004.970.1 0.17 -2.4
921,994 - Xcc-8004.970.1 0.17 +0.5

Or see this region's nucleotide sequence