Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.703.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.702.1 and Xcc-8004.703.1 are separated by 328 nucleotidesXcc-8004.703.1 and Xcc-8004.704.1 are separated by 186 nucleotides Xcc-8004.702.1: Xcc-8004.702.1 - Mobile element protein, at 652,419 to 653,252 Xcc-8004.702.1 Xcc-8004.703.1: Xcc-8004.703.1 - hypothetical protein, at 653,581 to 653,892 Xcc-8004.703.1 Xcc-8004.704.1: Xcc-8004.704.1 - 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54), at 654,079 to 655,152 Xcc-8004.704.1 Position (kb) 653 654Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 653.225 kb on - strandat 653.282 kb on + strandat 653.282 kb on + strandat 653.299 kb on + strandat 653.309 kb on - strandat 653.494 kb on + strandat 653.495 kb on - strandat 653.533 kb on - strandat 653.533 kb on - strandat 653.533 kb on - strandat 653.543 kb on - strandat 653.543 kb on - strandat 653.543 kb on - strandat 653.543 kb on - strandat 653.595 kb on + strandat 653.608 kb on - strandat 653.608 kb on - strandat 653.730 kb on + strand, within Xcc-8004.703.1at 653.876 kb on - strandat 654.105 kb on + strandat 654.105 kb on + strandat 654.293 kb on - strand, within Xcc-8004.704.1at 654.532 kb on + strand, within Xcc-8004.704.1at 654.532 kb on + strand, within Xcc-8004.704.1at 654.532 kb on + strand, within Xcc-8004.704.1at 654.533 kb on - strand, within Xcc-8004.704.1at 654.795 kb on + strand, within Xcc-8004.704.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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653,225 - -0.9
653,282 + -1.0
653,282 + -0.8
653,299 + -1.0
653,309 - +0.5
653,494 + +0.2
653,495 - -2.3
653,533 - -0.2
653,533 - +1.3
653,533 - -0.0
653,543 - -0.3
653,543 - -2.1
653,543 - +2.1
653,543 - -0.9
653,595 + +1.4
653,608 - -1.5
653,608 - -2.3
653,730 + Xcc-8004.703.1 0.48 -4.1
653,876 - +1.2
654,105 + +0.7
654,105 + +0.5
654,293 - Xcc-8004.704.1 0.20 -2.2
654,532 + Xcc-8004.704.1 0.42 +0.7
654,532 + Xcc-8004.704.1 0.42 +1.1
654,532 + Xcc-8004.704.1 0.42 +0.3
654,533 - Xcc-8004.704.1 0.42 +0.4
654,795 + Xcc-8004.704.1 0.67 -0.3

Or see this region's nucleotide sequence