Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.656.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.654.1 and Xcc-8004.656.1 are separated by 311 nucleotidesXcc-8004.656.1 and Xcc-8004.657.1 are separated by 87 nucleotides Xcc-8004.654.1: Xcc-8004.654.1 - MFS permease protein, at 595,976 to 597,250 Xcc-8004.654.1 Xcc-8004.656.1: Xcc-8004.656.1 - FIG01209718: hypothetical protein, at 597,562 to 599,805 Xcc-8004.656.1 Xcc-8004.657.1: Xcc-8004.657.1 - Phosphoribosylamine--glycine ligase (EC 6.3.4.13), at 599,893 to 601,188 Xcc-8004.657.1 Position (kb) 597 598 599 600Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 596.567 kb on + strand, within Xcc-8004.654.1at 596.654 kb on + strand, within Xcc-8004.654.1at 596.801 kb on + strand, within Xcc-8004.654.1at 596.802 kb on - strand, within Xcc-8004.654.1at 597.047 kb on + strand, within Xcc-8004.654.1at 597.047 kb on + strand, within Xcc-8004.654.1at 597.048 kb on - strand, within Xcc-8004.654.1at 597.089 kb on + strand, within Xcc-8004.654.1at 597.089 kb on + strand, within Xcc-8004.654.1at 597.089 kb on + strand, within Xcc-8004.654.1at 597.090 kb on - strand, within Xcc-8004.654.1at 597.090 kb on - strand, within Xcc-8004.654.1at 597.091 kb on + strand, within Xcc-8004.654.1at 597.091 kb on + strand, within Xcc-8004.654.1at 597.091 kb on + strand, within Xcc-8004.654.1at 597.092 kb on - strand, within Xcc-8004.654.1at 597.092 kb on - strand, within Xcc-8004.654.1at 597.092 kb on - strand, within Xcc-8004.654.1at 597.092 kb on - strand, within Xcc-8004.654.1at 597.101 kb on + strand, within Xcc-8004.654.1at 597.101 kb on + strand, within Xcc-8004.654.1at 597.101 kb on + strand, within Xcc-8004.654.1at 597.101 kb on + strand, within Xcc-8004.654.1at 597.102 kb on - strand, within Xcc-8004.654.1at 597.102 kb on - strand, within Xcc-8004.654.1at 597.102 kb on - strand, within Xcc-8004.654.1at 597.315 kb on + strandat 597.315 kb on + strandat 597.315 kb on + strandat 597.315 kb on + strandat 597.323 kb on + strandat 597.323 kb on + strandat 597.382 kb on + strandat 597.382 kb on + strandat 597.383 kb on - strandat 597.395 kb on - strandat 597.556 kb on + strandat 597.563 kb on + strandat 597.563 kb on + strandat 597.697 kb on + strandat 597.697 kb on + strandat 597.697 kb on + strandat 597.698 kb on - strandat 597.698 kb on - strandat 597.818 kb on + strand, within Xcc-8004.656.1at 597.880 kb on + strand, within Xcc-8004.656.1at 597.881 kb on - strand, within Xcc-8004.656.1at 597.881 kb on - strand, within Xcc-8004.656.1at 597.893 kb on + strand, within Xcc-8004.656.1at 597.893 kb on + strand, within Xcc-8004.656.1at 598.067 kb on + strand, within Xcc-8004.656.1at 598.068 kb on - strand, within Xcc-8004.656.1at 598.068 kb on - strand, within Xcc-8004.656.1at 598.068 kb on - strand, within Xcc-8004.656.1at 598.078 kb on + strand, within Xcc-8004.656.1at 598.078 kb on + strand, within Xcc-8004.656.1at 598.079 kb on - strand, within Xcc-8004.656.1at 598.079 kb on - strand, within Xcc-8004.656.1at 598.091 kb on + strand, within Xcc-8004.656.1at 598.298 kb on + strand, within Xcc-8004.656.1at 598.298 kb on + strand, within Xcc-8004.656.1at 598.536 kb on - strand, within Xcc-8004.656.1at 598.796 kb on + strand, within Xcc-8004.656.1at 598.797 kb on - strand, within Xcc-8004.656.1at 598.797 kb on - strand, within Xcc-8004.656.1at 598.906 kb on + strand, within Xcc-8004.656.1at 598.932 kb on - strand, within Xcc-8004.656.1at 598.974 kb on - strand, within Xcc-8004.656.1at 599.021 kb on + strand, within Xcc-8004.656.1at 599.021 kb on + strand, within Xcc-8004.656.1at 599.021 kb on + strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.022 kb on - strand, within Xcc-8004.656.1at 599.024 kb on + strand, within Xcc-8004.656.1at 599.025 kb on - strand, within Xcc-8004.656.1at 599.025 kb on - strand, within Xcc-8004.656.1at 599.025 kb on - strand, within Xcc-8004.656.1at 599.025 kb on - strand, within Xcc-8004.656.1at 599.210 kb on + strand, within Xcc-8004.656.1at 599.211 kb on - strand, within Xcc-8004.656.1at 599.390 kb on + strand, within Xcc-8004.656.1at 599.391 kb on - strand, within Xcc-8004.656.1at 599.429 kb on + strand, within Xcc-8004.656.1at 599.430 kb on - strand, within Xcc-8004.656.1at 599.715 kb on - strandat 599.715 kb on - strandat 599.844 kb on + strandat 599.859 kb on - strandat 599.988 kb on - strandat 600.377 kb on + strand, within Xcc-8004.657.1at 600.788 kb on + strand, within Xcc-8004.657.1at 600.788 kb on + strand, within Xcc-8004.657.1at 600.788 kb on + strand, within Xcc-8004.657.1at 600.789 kb on - strand, within Xcc-8004.657.1at 600.789 kb on - strand, within Xcc-8004.657.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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596,567 + Xcc-8004.654.1 0.46 +0.7
596,654 + Xcc-8004.654.1 0.53 +0.1
596,801 + Xcc-8004.654.1 0.65 +0.7
596,802 - Xcc-8004.654.1 0.65 +1.7
597,047 + Xcc-8004.654.1 0.84 -2.9
597,047 + Xcc-8004.654.1 0.84 -0.6
597,048 - Xcc-8004.654.1 0.84 +0.3
597,089 + Xcc-8004.654.1 0.87 +2.0
597,089 + Xcc-8004.654.1 0.87 +0.7
597,089 + Xcc-8004.654.1 0.87 -0.6
597,090 - Xcc-8004.654.1 0.87 +1.3
597,090 - Xcc-8004.654.1 0.87 -0.7
597,091 + Xcc-8004.654.1 0.87 -0.4
597,091 + Xcc-8004.654.1 0.87 -1.2
597,091 + Xcc-8004.654.1 0.87 -0.2
597,092 - Xcc-8004.654.1 0.88 -0.3
597,092 - Xcc-8004.654.1 0.88 +1.4
597,092 - Xcc-8004.654.1 0.88 -0.7
597,092 - Xcc-8004.654.1 0.88 +0.0
597,101 + Xcc-8004.654.1 0.88 +0.4
597,101 + Xcc-8004.654.1 0.88 -0.6
597,101 + Xcc-8004.654.1 0.88 +1.0
597,101 + Xcc-8004.654.1 0.88 -0.3
597,102 - Xcc-8004.654.1 0.88 +0.2
597,102 - Xcc-8004.654.1 0.88 +2.2
597,102 - Xcc-8004.654.1 0.88 +0.1
597,315 + -1.4
597,315 + +1.7
597,315 + -2.1
597,315 + -0.3
597,323 + -2.1
597,323 + -2.5
597,382 + -3.5
597,382 + +0.7
597,383 - -0.3
597,395 - +0.8
597,556 + +1.0
597,563 + +0.2
597,563 + -0.1
597,697 + -0.3
597,697 + -0.3
597,697 + +2.6
597,698 - -0.5
597,698 - -0.4
597,818 + Xcc-8004.656.1 0.11 -1.0
597,880 + Xcc-8004.656.1 0.14 -0.9
597,881 - Xcc-8004.656.1 0.14 -1.5
597,881 - Xcc-8004.656.1 0.14 +1.2
597,893 + Xcc-8004.656.1 0.15 -0.9
597,893 + Xcc-8004.656.1 0.15 +0.7
598,067 + Xcc-8004.656.1 0.23 +0.3
598,068 - Xcc-8004.656.1 0.23 -0.3
598,068 - Xcc-8004.656.1 0.23 -1.7
598,068 - Xcc-8004.656.1 0.23 -0.6
598,078 + Xcc-8004.656.1 0.23 -0.1
598,078 + Xcc-8004.656.1 0.23 +1.1
598,079 - Xcc-8004.656.1 0.23 +0.7
598,079 - Xcc-8004.656.1 0.23 +2.4
598,091 + Xcc-8004.656.1 0.24 +1.3
598,298 + Xcc-8004.656.1 0.33 -0.9
598,298 + Xcc-8004.656.1 0.33 +1.1
598,536 - Xcc-8004.656.1 0.43 -1.3
598,796 + Xcc-8004.656.1 0.55 -1.4
598,797 - Xcc-8004.656.1 0.55 +0.6
598,797 - Xcc-8004.656.1 0.55 -1.1
598,906 + Xcc-8004.656.1 0.60 -1.3
598,932 - Xcc-8004.656.1 0.61 -0.9
598,974 - Xcc-8004.656.1 0.63 -0.1
599,021 + Xcc-8004.656.1 0.65 +0.4
599,021 + Xcc-8004.656.1 0.65 +1.6
599,021 + Xcc-8004.656.1 0.65 +1.7
599,022 - Xcc-8004.656.1 0.65 -0.2
599,022 - Xcc-8004.656.1 0.65 -0.5
599,022 - Xcc-8004.656.1 0.65 +1.3
599,022 - Xcc-8004.656.1 0.65 -1.3
599,022 - Xcc-8004.656.1 0.65 -0.5
599,022 - Xcc-8004.656.1 0.65 +3.8
599,022 - Xcc-8004.656.1 0.65 +0.6
599,022 - Xcc-8004.656.1 0.65 +2.3
599,024 + Xcc-8004.656.1 0.65 +2.3
599,025 - Xcc-8004.656.1 0.65 +0.7
599,025 - Xcc-8004.656.1 0.65 +0.7
599,025 - Xcc-8004.656.1 0.65 +1.1
599,025 - Xcc-8004.656.1 0.65 -1.8
599,210 + Xcc-8004.656.1 0.73 +0.1
599,211 - Xcc-8004.656.1 0.73 -0.8
599,390 + Xcc-8004.656.1 0.81 -2.9
599,391 - Xcc-8004.656.1 0.82 +0.1
599,429 + Xcc-8004.656.1 0.83 -1.6
599,430 - Xcc-8004.656.1 0.83 +4.0
599,715 - -1.8
599,715 - -1.6
599,844 + -0.0
599,859 - -2.3
599,988 - -3.9
600,377 + Xcc-8004.657.1 0.37 -0.9
600,788 + Xcc-8004.657.1 0.69 +0.9
600,788 + Xcc-8004.657.1 0.69 -2.6
600,788 + Xcc-8004.657.1 0.69 -3.9
600,789 - Xcc-8004.657.1 0.69 -1.9
600,789 - Xcc-8004.657.1 0.69 -2.5

Or see this region's nucleotide sequence