Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.601.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.599.1 and Xcc-8004.600.1 are separated by 59 nucleotidesXcc-8004.600.1 and Xcc-8004.601.1 are separated by 116 nucleotidesXcc-8004.601.1 and Xcc-8004.602.1 are separated by 335 nucleotidesXcc-8004.602.1 and Xcc-8004.603.1 are separated by 40 nucleotides Xcc-8004.599.1: Xcc-8004.599.1 - FIG01211412: hypothetical protein, at 552,366 to 553,103 Xcc-8004.599.1 Xcc-8004.600.1: Xcc-8004.600.1 - FIG01212762: hypothetical protein, at 553,163 to 553,849 Xcc-8004.600.1 Xcc-8004.601.1: Xcc-8004.601.1 - Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 553,966 to 554,892 Xcc-8004.601.1 Xcc-8004.602.1: Xcc-8004.602.1 - DnaJ related chaperone, at 555,228 to 555,557 Xcc-8004.602.1 Xcc-8004.603.1: Xcc-8004.603.1 - hypothetical protein, at 555,598 to 555,804 Xcc-8004.603.1 Position (kb) 553 554 555Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 553.083 kb on - strandat 553.083 kb on - strandat 553.164 kb on + strandat 553.164 kb on + strandat 553.164 kb on + strandat 553.164 kb on + strandat 553.164 kb on + strandat 553.164 kb on + strandat 553.165 kb on - strandat 553.165 kb on - strandat 553.166 kb on + strandat 553.182 kb on - strandat 553.182 kb on - strandat 553.231 kb on - strandat 553.231 kb on - strandat 553.231 kb on - strandat 553.231 kb on - strandat 553.302 kb on + strand, within Xcc-8004.600.1at 553.302 kb on + strand, within Xcc-8004.600.1at 553.302 kb on + strand, within Xcc-8004.600.1at 553.303 kb on - strand, within Xcc-8004.600.1at 553.303 kb on - strand, within Xcc-8004.600.1at 553.303 kb on - strand, within Xcc-8004.600.1at 553.303 kb on - strand, within Xcc-8004.600.1at 553.303 kb on - strand, within Xcc-8004.600.1at 553.365 kb on + strand, within Xcc-8004.600.1at 553.365 kb on + strand, within Xcc-8004.600.1at 553.365 kb on + strand, within Xcc-8004.600.1at 553.366 kb on - strand, within Xcc-8004.600.1at 553.366 kb on - strand, within Xcc-8004.600.1at 553.366 kb on - strand, within Xcc-8004.600.1at 553.368 kb on + strand, within Xcc-8004.600.1at 553.369 kb on - strand, within Xcc-8004.600.1at 553.369 kb on - strand, within Xcc-8004.600.1at 553.369 kb on - strand, within Xcc-8004.600.1at 553.369 kb on - strand, within Xcc-8004.600.1at 553.369 kb on - strand, within Xcc-8004.600.1at 553.371 kb on + strand, within Xcc-8004.600.1at 553.371 kb on + strand, within Xcc-8004.600.1at 553.371 kb on + strand, within Xcc-8004.600.1at 553.371 kb on + strand, within Xcc-8004.600.1at 553.372 kb on - strand, within Xcc-8004.600.1at 553.481 kb on + strand, within Xcc-8004.600.1at 553.481 kb on + strand, within Xcc-8004.600.1at 553.481 kb on + strand, within Xcc-8004.600.1at 553.481 kb on + strand, within Xcc-8004.600.1at 553.482 kb on - strand, within Xcc-8004.600.1at 553.482 kb on - strand, within Xcc-8004.600.1at 553.637 kb on + strand, within Xcc-8004.600.1at 553.637 kb on + strand, within Xcc-8004.600.1at 553.865 kb on + strandat 553.929 kb on + strandat 553.929 kb on + strandat 553.929 kb on + strandat 553.930 kb on - strandat 553.932 kb on + strandat 553.932 kb on + strandat 553.933 kb on - strandat 553.933 kb on - strandat 553.933 kb on - strandat 554.010 kb on - strandat 554.032 kb on + strandat 554.033 kb on - strandat 554.090 kb on + strand, within Xcc-8004.601.1at 554.090 kb on + strand, within Xcc-8004.601.1at 554.090 kb on + strand, within Xcc-8004.601.1at 554.091 kb on - strand, within Xcc-8004.601.1at 554.091 kb on - strand, within Xcc-8004.601.1at 554.114 kb on + strand, within Xcc-8004.601.1at 554.198 kb on + strand, within Xcc-8004.601.1at 554.198 kb on + strand, within Xcc-8004.601.1at 554.198 kb on + strand, within Xcc-8004.601.1at 554.199 kb on - strand, within Xcc-8004.601.1at 554.199 kb on - strand, within Xcc-8004.601.1at 554.199 kb on - strand, within Xcc-8004.601.1at 554.199 kb on - strand, within Xcc-8004.601.1at 554.199 kb on - strand, within Xcc-8004.601.1at 554.288 kb on + strand, within Xcc-8004.601.1at 554.288 kb on + strand, within Xcc-8004.601.1at 554.289 kb on - strand, within Xcc-8004.601.1at 554.289 kb on - strand, within Xcc-8004.601.1at 554.289 kb on - strand, within Xcc-8004.601.1at 554.406 kb on + strand, within Xcc-8004.601.1at 554.407 kb on - strand, within Xcc-8004.601.1at 554.422 kb on + strand, within Xcc-8004.601.1at 554.456 kb on + strand, within Xcc-8004.601.1at 554.486 kb on + strand, within Xcc-8004.601.1at 554.487 kb on - strand, within Xcc-8004.601.1at 554.487 kb on - strand, within Xcc-8004.601.1at 554.513 kb on + strand, within Xcc-8004.601.1at 554.771 kb on + strand, within Xcc-8004.601.1at 554.771 kb on + strand, within Xcc-8004.601.1at 554.772 kb on - strand, within Xcc-8004.601.1at 554.902 kb on + strandat 554.902 kb on + strandat 554.902 kb on + strandat 554.902 kb on + strandat 554.903 kb on - strandat 554.903 kb on - strandat 554.903 kb on - strandat 554.903 kb on - strandat 554.967 kb on - strandat 554.971 kb on + strandat 554.971 kb on + strandat 554.971 kb on + strandat 554.971 kb on + strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 554.972 kb on - strandat 555.045 kb on + strandat 555.046 kb on - strandat 555.122 kb on + strandat 555.129 kb on + strandat 555.370 kb on - strand, within Xcc-8004.602.1at 555.444 kb on + strand, within Xcc-8004.602.1at 555.444 kb on + strand, within Xcc-8004.602.1at 555.445 kb on - strand, within Xcc-8004.602.1at 555.525 kb on + strandat 555.587 kb on + strandat 555.587 kb on + strandat 555.588 kb on - strandat 555.588 kb on - strandat 555.704 kb on + strand, within Xcc-8004.603.1at 555.704 kb on + strand, within Xcc-8004.603.1at 555.704 kb on + strand, within Xcc-8004.603.1at 555.704 kb on + strand, within Xcc-8004.603.1at 555.705 kb on - strand, within Xcc-8004.603.1at 555.705 kb on - strand, within Xcc-8004.603.1at 555.781 kb on + strand, within Xcc-8004.603.1at 555.781 kb on + strand, within Xcc-8004.603.1at 555.882 kb on + strandat 555.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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553,083 - -0.2
553,083 - -0.6
553,164 + -0.0
553,164 + -1.1
553,164 + +0.7
553,164 + +1.4
553,164 + -1.3
553,164 + -0.7
553,165 - -0.3
553,165 - -0.3
553,166 + -1.3
553,182 - -1.2
553,182 - -4.2
553,231 - +1.0
553,231 - -0.9
553,231 - -0.6
553,231 - +0.1
553,302 + Xcc-8004.600.1 0.20 +0.0
553,302 + Xcc-8004.600.1 0.20 +1.4
553,302 + Xcc-8004.600.1 0.20 -0.9
553,303 - Xcc-8004.600.1 0.20 +0.7
553,303 - Xcc-8004.600.1 0.20 +1.7
553,303 - Xcc-8004.600.1 0.20 +0.3
553,303 - Xcc-8004.600.1 0.20 -0.9
553,303 - Xcc-8004.600.1 0.20 -0.2
553,365 + Xcc-8004.600.1 0.29 +0.0
553,365 + Xcc-8004.600.1 0.29 +1.4
553,365 + Xcc-8004.600.1 0.29 -1.3
553,366 - Xcc-8004.600.1 0.30 +1.7
553,366 - Xcc-8004.600.1 0.30 -1.2
553,366 - Xcc-8004.600.1 0.30 -0.9
553,368 + Xcc-8004.600.1 0.30 -0.4
553,369 - Xcc-8004.600.1 0.30 +0.8
553,369 - Xcc-8004.600.1 0.30 +0.5
553,369 - Xcc-8004.600.1 0.30 -0.3
553,369 - Xcc-8004.600.1 0.30 -0.9
553,369 - Xcc-8004.600.1 0.30 +1.3
553,371 + Xcc-8004.600.1 0.30 -0.6
553,371 + Xcc-8004.600.1 0.30 +0.1
553,371 + Xcc-8004.600.1 0.30 -0.6
553,371 + Xcc-8004.600.1 0.30 -1.1
553,372 - Xcc-8004.600.1 0.30 -0.3
553,481 + Xcc-8004.600.1 0.46 -1.3
553,481 + Xcc-8004.600.1 0.46 +0.5
553,481 + Xcc-8004.600.1 0.46 -0.5
553,481 + Xcc-8004.600.1 0.46 -1.6
553,482 - Xcc-8004.600.1 0.46 -1.0
553,482 - Xcc-8004.600.1 0.46 +1.0
553,637 + Xcc-8004.600.1 0.69 -0.3
553,637 + Xcc-8004.600.1 0.69 -0.7
553,865 + +0.8
553,929 + -1.0
553,929 + -1.6
553,929 + -0.1
553,930 - -0.5
553,932 + +1.4
553,932 + -2.0
553,933 - +0.9
553,933 - +2.2
553,933 - -0.9
554,010 - -3.3
554,032 + -3.2
554,033 - -2.3
554,090 + Xcc-8004.601.1 0.13 -0.9
554,090 + Xcc-8004.601.1 0.13 -0.9
554,090 + Xcc-8004.601.1 0.13 -0.3
554,091 - Xcc-8004.601.1 0.13 -0.3
554,091 - Xcc-8004.601.1 0.13 -1.3
554,114 + Xcc-8004.601.1 0.16 -0.6
554,198 + Xcc-8004.601.1 0.25 -1.9
554,198 + Xcc-8004.601.1 0.25 -0.3
554,198 + Xcc-8004.601.1 0.25 -0.3
554,199 - Xcc-8004.601.1 0.25 -3.0
554,199 - Xcc-8004.601.1 0.25 -1.3
554,199 - Xcc-8004.601.1 0.25 -2.7
554,199 - Xcc-8004.601.1 0.25 -2.5
554,199 - Xcc-8004.601.1 0.25 -3.3
554,288 + Xcc-8004.601.1 0.35 -1.9
554,288 + Xcc-8004.601.1 0.35 -3.1
554,289 - Xcc-8004.601.1 0.35 -2.5
554,289 - Xcc-8004.601.1 0.35 -2.7
554,289 - Xcc-8004.601.1 0.35 -2.5
554,406 + Xcc-8004.601.1 0.47 -2.3
554,407 - Xcc-8004.601.1 0.48 -1.3
554,422 + Xcc-8004.601.1 0.49 -0.3
554,456 + Xcc-8004.601.1 0.53 -0.9
554,486 + Xcc-8004.601.1 0.56 -1.9
554,487 - Xcc-8004.601.1 0.56 -3.1
554,487 - Xcc-8004.601.1 0.56 -1.9
554,513 + Xcc-8004.601.1 0.59 -0.9
554,771 + Xcc-8004.601.1 0.87 -2.6
554,771 + Xcc-8004.601.1 0.87 -1.9
554,772 - Xcc-8004.601.1 0.87 -0.8
554,902 + -3.0
554,902 + -3.9
554,902 + -0.8
554,902 + +3.9
554,903 - -0.7
554,903 - +1.7
554,903 - +0.6
554,903 - -2.6
554,967 - -1.9
554,971 + +0.3
554,971 + -1.2
554,971 + +4.3
554,971 + -2.8
554,972 - -1.1
554,972 - +0.7
554,972 - -0.6
554,972 - -0.6
554,972 - -0.9
554,972 - +1.6
554,972 - -2.0
554,972 - +1.5
554,972 - -0.9
554,972 - -2.5
554,972 - +0.1
554,972 - -1.5
555,045 + +0.4
555,046 - +0.5
555,122 + +0.7
555,129 + -0.3
555,370 - Xcc-8004.602.1 0.43 -0.3
555,444 + Xcc-8004.602.1 0.65 +1.1
555,444 + Xcc-8004.602.1 0.65 -1.5
555,445 - Xcc-8004.602.1 0.66 +0.9
555,525 + +0.7
555,587 + +1.1
555,587 + -0.4
555,588 - -2.3
555,588 - -0.3
555,704 + Xcc-8004.603.1 0.51 +1.5
555,704 + Xcc-8004.603.1 0.51 -1.0
555,704 + Xcc-8004.603.1 0.51 +0.0
555,704 + Xcc-8004.603.1 0.51 -0.6
555,705 - Xcc-8004.603.1 0.52 +0.3
555,705 - Xcc-8004.603.1 0.52 -0.1
555,781 + Xcc-8004.603.1 0.88 -0.7
555,781 + Xcc-8004.603.1 0.88 -0.6
555,882 + +0.3
555,883 - -2.2

Or see this region's nucleotide sequence