Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5347.1 and Xcc-8004.5348.1 are separated by 14 nucleotides Xcc-8004.5348.1 and Xcc-8004.5349.1 are separated by 264 nucleotides Xcc-8004.5349.1 and Xcc-8004.5350.1 are separated by 122 nucleotides Xcc-8004.5350.1 and Xcc-8004.5351.1 are separated by 185 nucleotides Xcc-8004.5351.1 and Xcc-8004.5352.1 are separated by 168 nucleotides
Xcc-8004.5347.1: Xcc-8004.5347.1 - FIG01214917: hypothetical protein, at 5,075,988 to 5,077,337
Xcc-8004.5347.1
Xcc-8004.5348.1: Xcc-8004.5348.1 - hypothetical protein, at 5,077,352 to 5,077,909
Xcc-8004.5348.1
Xcc-8004.5349.1: Xcc-8004.5349.1 - FIG01210492: hypothetical protein, at 5,078,174 to 5,078,506
Xcc-8004.5349.1
Xcc-8004.5350.1: Xcc-8004.5350.1 - FIG01210151: hypothetical protein, at 5,078,629 to 5,078,853
Xcc-8004.5350.1
Xcc-8004.5351.1: Xcc-8004.5351.1 - HigA protein (antitoxin to HigB), at 5,079,039 to 5,079,329
Xcc-8004.5351.1
Xcc-8004.5352.1: Xcc-8004.5352.1 - Exodeoxyribonuclease V alpha chain (EC 3.1.11.5), at 5,079,498 to 5,081,735
Xcc-8004.5352.1
Position (kb) 5078
5079 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5077.226 kb on + strand at 5077.226 kb on + strand at 5077.227 kb on - strand at 5077.227 kb on - strand at 5077.231 kb on - strand at 5077.231 kb on - strand at 5077.231 kb on - strand at 5077.366 kb on + strand at 5077.366 kb on + strand at 5077.367 kb on - strand at 5077.410 kb on - strand, within Xcc-8004.5348.1 at 5077.410 kb on - strand, within Xcc-8004.5348.1 at 5077.413 kb on + strand, within Xcc-8004.5348.1 at 5077.413 kb on + strand, within Xcc-8004.5348.1 at 5077.413 kb on + strand, within Xcc-8004.5348.1 at 5077.413 kb on + strand, within Xcc-8004.5348.1 at 5077.413 kb on + strand, within Xcc-8004.5348.1 at 5077.413 kb on + strand, within Xcc-8004.5348.1 at 5077.413 kb on + strand, within Xcc-8004.5348.1 at 5077.414 kb on - strand, within Xcc-8004.5348.1 at 5077.414 kb on - strand, within Xcc-8004.5348.1 at 5077.414 kb on - strand, within Xcc-8004.5348.1 at 5077.414 kb on - strand, within Xcc-8004.5348.1 at 5077.417 kb on + strand, within Xcc-8004.5348.1 at 5077.417 kb on + strand, within Xcc-8004.5348.1 at 5077.417 kb on + strand, within Xcc-8004.5348.1 at 5077.417 kb on + strand, within Xcc-8004.5348.1 at 5077.417 kb on + strand, within Xcc-8004.5348.1 at 5077.417 kb on + strand, within Xcc-8004.5348.1 at 5077.418 kb on - strand, within Xcc-8004.5348.1 at 5077.418 kb on - strand, within Xcc-8004.5348.1 at 5077.418 kb on - strand, within Xcc-8004.5348.1 at 5077.418 kb on - strand, within Xcc-8004.5348.1 at 5077.418 kb on - strand, within Xcc-8004.5348.1 at 5077.418 kb on - strand, within Xcc-8004.5348.1 at 5077.422 kb on - strand, within Xcc-8004.5348.1 at 5077.429 kb on - strand, within Xcc-8004.5348.1 at 5077.429 kb on - strand, within Xcc-8004.5348.1 at 5077.429 kb on - strand, within Xcc-8004.5348.1 at 5077.429 kb on - strand, within Xcc-8004.5348.1 at 5077.450 kb on + strand, within Xcc-8004.5348.1 at 5077.533 kb on - strand, within Xcc-8004.5348.1 at 5077.563 kb on + strand, within Xcc-8004.5348.1 at 5077.564 kb on - strand, within Xcc-8004.5348.1 at 5077.578 kb on - strand, within Xcc-8004.5348.1 at 5077.612 kb on + strand, within Xcc-8004.5348.1 at 5077.612 kb on + strand, within Xcc-8004.5348.1 at 5077.612 kb on + strand, within Xcc-8004.5348.1 at 5077.612 kb on + strand, within Xcc-8004.5348.1 at 5077.612 kb on + strand, within Xcc-8004.5348.1 at 5077.613 kb on - strand, within Xcc-8004.5348.1 at 5077.613 kb on - strand, within Xcc-8004.5348.1 at 5077.613 kb on - strand, within Xcc-8004.5348.1 at 5077.613 kb on - strand, within Xcc-8004.5348.1 at 5077.613 kb on - strand, within Xcc-8004.5348.1 at 5077.618 kb on + strand, within Xcc-8004.5348.1 at 5077.618 kb on + strand, within Xcc-8004.5348.1 at 5077.618 kb on + strand, within Xcc-8004.5348.1 at 5077.725 kb on + strand, within Xcc-8004.5348.1 at 5077.726 kb on - strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.834 kb on + strand, within Xcc-8004.5348.1 at 5077.835 kb on - strand, within Xcc-8004.5348.1 at 5077.835 kb on - strand, within Xcc-8004.5348.1 at 5077.835 kb on - strand, within Xcc-8004.5348.1 at 5077.835 kb on - strand, within Xcc-8004.5348.1 at 5077.835 kb on - strand, within Xcc-8004.5348.1 at 5077.878 kb on + strand at 5077.878 kb on + strand at 5077.879 kb on - strand at 5077.903 kb on + strand at 5077.904 kb on - strand at 5077.910 kb on + strand at 5077.910 kb on + strand at 5077.911 kb on - strand at 5077.911 kb on - strand at 5077.920 kb on + strand at 5077.920 kb on + strand at 5077.920 kb on + strand at 5077.920 kb on + strand at 5077.921 kb on - strand at 5077.921 kb on - strand at 5077.980 kb on + strand at 5077.981 kb on - strand at 5077.981 kb on - strand at 5077.986 kb on + strand at 5077.986 kb on + strand at 5077.986 kb on + strand at 5077.986 kb on + strand at 5077.986 kb on + strand at 5077.986 kb on + strand at 5077.987 kb on - strand at 5078.038 kb on + strand at 5078.039 kb on - strand at 5078.039 kb on - strand at 5078.074 kb on + strand at 5078.074 kb on + strand at 5078.075 kb on - strand at 5078.075 kb on - strand at 5078.075 kb on - strand at 5078.090 kb on - strand at 5078.098 kb on + strand at 5078.098 kb on + strand at 5078.099 kb on - strand at 5078.124 kb on + strand at 5078.124 kb on + strand at 5078.124 kb on + strand at 5078.124 kb on + strand at 5078.124 kb on + strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.125 kb on - strand at 5078.375 kb on + strand, within Xcc-8004.5349.1 at 5078.375 kb on + strand, within Xcc-8004.5349.1 at 5078.387 kb on + strand, within Xcc-8004.5349.1 at 5078.388 kb on - strand, within Xcc-8004.5349.1 at 5078.388 kb on - strand, within Xcc-8004.5349.1 at 5078.388 kb on - strand, within Xcc-8004.5349.1 at 5078.484 kb on - strand at 5078.484 kb on - strand at 5078.504 kb on + strand at 5078.504 kb on + strand at 5078.504 kb on + strand at 5078.504 kb on + strand at 5078.505 kb on - strand at 5078.505 kb on - strand at 5078.505 kb on - strand at 5078.505 kb on - strand at 5078.505 kb on - strand at 5078.687 kb on + strand, within Xcc-8004.5350.1 at 5078.687 kb on + strand, within Xcc-8004.5350.1 at 5078.687 kb on + strand, within Xcc-8004.5350.1 at 5078.687 kb on + strand, within Xcc-8004.5350.1 at 5078.687 kb on + strand, within Xcc-8004.5350.1 at 5078.688 kb on - strand, within Xcc-8004.5350.1 at 5078.688 kb on - strand, within Xcc-8004.5350.1 at 5078.743 kb on + strand, within Xcc-8004.5350.1 at 5078.743 kb on + strand, within Xcc-8004.5350.1 at 5078.743 kb on + strand, within Xcc-8004.5350.1 at 5078.743 kb on + strand, within Xcc-8004.5350.1 at 5078.743 kb on + strand, within Xcc-8004.5350.1 at 5078.744 kb on - strand, within Xcc-8004.5350.1 at 5078.744 kb on - strand, within Xcc-8004.5350.1 at 5078.744 kb on - strand, within Xcc-8004.5350.1 at 5078.851 kb on + strand at 5078.851 kb on + strand at 5078.851 kb on + strand at 5078.852 kb on - strand at 5078.852 kb on - strand at 5078.869 kb on - strand at 5078.910 kb on + strand at 5078.911 kb on - strand at 5078.967 kb on + strand at 5078.968 kb on - strand at 5078.968 kb on - strand at 5078.985 kb on + strand at 5078.985 kb on + strand at 5078.985 kb on + strand at 5078.985 kb on + strand at 5078.986 kb on - strand at 5078.986 kb on - strand at 5078.986 kb on - strand at 5078.986 kb on - strand at 5078.986 kb on - strand at 5079.106 kb on + strand, within Xcc-8004.5351.1 at 5079.107 kb on - strand, within Xcc-8004.5351.1 at 5079.228 kb on + strand, within Xcc-8004.5351.1 at 5079.229 kb on - strand, within Xcc-8004.5351.1 at 5079.229 kb on - strand, within Xcc-8004.5351.1 at 5079.318 kb on + strand at 5079.318 kb on + strand at 5079.318 kb on + strand at 5079.373 kb on - strand at 5079.373 kb on - strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.391 kb on + strand at 5079.392 kb on - strand at 5079.392 kb on - strand at 5079.392 kb on - strand at 5079.392 kb on - strand at 5079.392 kb on - strand at 5079.392 kb on - strand at 5079.410 kb on + strand at 5079.410 kb on + strand at 5079.427 kb on + strand at 5079.427 kb on + strand at 5079.428 kb on - strand at 5079.441 kb on + strand at 5079.442 kb on - strand at 5079.442 kb on - strand at 5079.442 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 5,077,226 + -1.1 5,077,226 + +0.9 5,077,227 - +0.8 5,077,227 - -0.2 5,077,231 - +0.8 5,077,231 - -1.8 5,077,231 - -1.1 5,077,366 + +1.2 5,077,366 + +0.8 5,077,367 - +0.0 5,077,410 - Xcc-8004.5348.1 0.10 +0.2 5,077,410 - Xcc-8004.5348.1 0.10 -1.8 5,077,413 + Xcc-8004.5348.1 0.11 +2.0 5,077,413 + Xcc-8004.5348.1 0.11 +1.4 5,077,413 + Xcc-8004.5348.1 0.11 -1.5 5,077,413 + Xcc-8004.5348.1 0.11 +0.7 5,077,413 + Xcc-8004.5348.1 0.11 -1.2 5,077,413 + Xcc-8004.5348.1 0.11 +1.9 5,077,413 + Xcc-8004.5348.1 0.11 -2.0 5,077,414 - Xcc-8004.5348.1 0.11 -0.4 5,077,414 - Xcc-8004.5348.1 0.11 -0.8 5,077,414 - Xcc-8004.5348.1 0.11 -1.5 5,077,414 - Xcc-8004.5348.1 0.11 -0.3 5,077,417 + Xcc-8004.5348.1 0.12 +1.8 5,077,417 + Xcc-8004.5348.1 0.12 +1.4 5,077,417 + Xcc-8004.5348.1 0.12 -1.1 5,077,417 + Xcc-8004.5348.1 0.12 +3.4 5,077,417 + Xcc-8004.5348.1 0.12 -1.2 5,077,417 + Xcc-8004.5348.1 0.12 -0.2 5,077,418 - Xcc-8004.5348.1 0.12 +0.1 5,077,418 - Xcc-8004.5348.1 0.12 -1.8 5,077,418 - Xcc-8004.5348.1 0.12 -1.8 5,077,418 - Xcc-8004.5348.1 0.12 -0.8 5,077,418 - Xcc-8004.5348.1 0.12 -0.2 5,077,418 - Xcc-8004.5348.1 0.12 -1.4 5,077,422 - Xcc-8004.5348.1 0.13 -1.1 5,077,429 - Xcc-8004.5348.1 0.14 -0.9 5,077,429 - Xcc-8004.5348.1 0.14 -0.4 5,077,429 - Xcc-8004.5348.1 0.14 -1.6 5,077,429 - Xcc-8004.5348.1 0.14 +0.2 5,077,450 + Xcc-8004.5348.1 0.18 -0.4 5,077,533 - Xcc-8004.5348.1 0.32 +1.6 5,077,563 + Xcc-8004.5348.1 0.38 +0.4 5,077,564 - Xcc-8004.5348.1 0.38 -0.0 5,077,578 - Xcc-8004.5348.1 0.41 +4.8 5,077,612 + Xcc-8004.5348.1 0.47 -0.2 5,077,612 + Xcc-8004.5348.1 0.47 +3.4 5,077,612 + Xcc-8004.5348.1 0.47 +3.4 5,077,612 + Xcc-8004.5348.1 0.47 -1.1 5,077,612 + Xcc-8004.5348.1 0.47 -0.8 5,077,613 - Xcc-8004.5348.1 0.47 -0.8 5,077,613 - Xcc-8004.5348.1 0.47 +0.8 5,077,613 - Xcc-8004.5348.1 0.47 -0.2 5,077,613 - Xcc-8004.5348.1 0.47 -1.3 5,077,613 - Xcc-8004.5348.1 0.47 -1.1 5,077,618 + Xcc-8004.5348.1 0.48 -1.2 5,077,618 + Xcc-8004.5348.1 0.48 +0.2 5,077,618 + Xcc-8004.5348.1 0.48 -1.5 5,077,725 + Xcc-8004.5348.1 0.67 -0.6 5,077,726 - Xcc-8004.5348.1 0.67 -0.6 5,077,834 + Xcc-8004.5348.1 0.86 -1.8 5,077,834 + Xcc-8004.5348.1 0.86 +1.5 5,077,834 + Xcc-8004.5348.1 0.86 -0.5 5,077,834 + Xcc-8004.5348.1 0.86 +2.4 5,077,834 + Xcc-8004.5348.1 0.86 +0.8 5,077,834 + Xcc-8004.5348.1 0.86 +0.3 5,077,834 + Xcc-8004.5348.1 0.86 +4.4 5,077,835 - Xcc-8004.5348.1 0.87 -0.2 5,077,835 - Xcc-8004.5348.1 0.87 +1.8 5,077,835 - Xcc-8004.5348.1 0.87 -0.9 5,077,835 - Xcc-8004.5348.1 0.87 +1.4 5,077,835 - Xcc-8004.5348.1 0.87 -2.4 5,077,878 + +0.8 5,077,878 + +0.6 5,077,879 - +0.5 5,077,903 + -0.2 5,077,904 - +0.4 5,077,910 + +0.6 5,077,910 + +1.1 5,077,911 - +0.1 5,077,911 - +2.6 5,077,920 + +0.2 5,077,920 + -1.6 5,077,920 + -2.0 5,077,920 + -2.2 5,077,921 - -0.5 5,077,921 - +0.7 5,077,980 + -0.8 5,077,981 - -0.6 5,077,981 - +0.6 5,077,986 + -0.2 5,077,986 + -0.2 5,077,986 + +1.4 5,077,986 + +0.0 5,077,986 + -1.7 5,077,986 + -0.1 5,077,987 - +3.6 5,078,038 + +1.0 5,078,039 - +1.4 5,078,039 - -0.2 5,078,074 + -1.6 5,078,074 + -0.4 5,078,075 - +3.0 5,078,075 - +0.8 5,078,075 - -1.1 5,078,090 - -1.6 5,078,098 + +0.4 5,078,098 + -2.0 5,078,099 - -2.2 5,078,124 + -0.8 5,078,124 + +1.0 5,078,124 + +1.5 5,078,124 + +0.8 5,078,124 + -0.6 5,078,125 - +2.9 5,078,125 - +0.3 5,078,125 - +0.0 5,078,125 - +1.6 5,078,125 - +0.1 5,078,125 - +2.4 5,078,125 - +3.9 5,078,125 - -0.4 5,078,375 + Xcc-8004.5349.1 0.60 +1.1 5,078,375 + Xcc-8004.5349.1 0.60 -0.2 5,078,387 + Xcc-8004.5349.1 0.64 -2.3 5,078,388 - Xcc-8004.5349.1 0.64 +0.5 5,078,388 - Xcc-8004.5349.1 0.64 +1.0 5,078,388 - Xcc-8004.5349.1 0.64 +1.0 5,078,484 - +1.5 5,078,484 - -0.6 5,078,504 + +0.3 5,078,504 + -0.5 5,078,504 + -0.5 5,078,504 + +0.2 5,078,505 - -0.6 5,078,505 - -1.2 5,078,505 - +0.2 5,078,505 - +1.1 5,078,505 - -0.2 5,078,687 + Xcc-8004.5350.1 0.26 -0.8 5,078,687 + Xcc-8004.5350.1 0.26 +0.3 5,078,687 + Xcc-8004.5350.1 0.26 -3.0 5,078,687 + Xcc-8004.5350.1 0.26 -0.8 5,078,687 + Xcc-8004.5350.1 0.26 +0.2 5,078,688 - Xcc-8004.5350.1 0.26 +0.8 5,078,688 - Xcc-8004.5350.1 0.26 +0.0 5,078,743 + Xcc-8004.5350.1 0.51 -1.6 5,078,743 + Xcc-8004.5350.1 0.51 -1.3 5,078,743 + Xcc-8004.5350.1 0.51 +1.0 5,078,743 + Xcc-8004.5350.1 0.51 +0.2 5,078,743 + Xcc-8004.5350.1 0.51 +0.6 5,078,744 - Xcc-8004.5350.1 0.51 -0.2 5,078,744 - Xcc-8004.5350.1 0.51 +1.7 5,078,744 - Xcc-8004.5350.1 0.51 -0.6 5,078,851 + -2.0 5,078,851 + +0.9 5,078,851 + -0.6 5,078,852 - -0.2 5,078,852 - -0.6 5,078,869 - -3.4 5,078,910 + +1.6 5,078,911 - +0.1 5,078,967 + -0.1 5,078,968 - +1.3 5,078,968 - +0.6 5,078,985 + +1.3 5,078,985 + +1.0 5,078,985 + +1.0 5,078,985 + +1.2 5,078,986 - -0.5 5,078,986 - -3.5 5,078,986 - +0.2 5,078,986 - +0.8 5,078,986 - -1.3 5,079,106 + Xcc-8004.5351.1 0.23 -1.4 5,079,107 - Xcc-8004.5351.1 0.23 -1.3 5,079,228 + Xcc-8004.5351.1 0.65 -0.3 5,079,229 - Xcc-8004.5351.1 0.65 +2.4 5,079,229 - Xcc-8004.5351.1 0.65 -0.6 5,079,318 + +0.4 5,079,318 + +0.0 5,079,318 + -2.0 5,079,373 - -2.7 5,079,373 - +2.7 5,079,391 + -0.7 5,079,391 + -0.1 5,079,391 + -1.3 5,079,391 + -1.8 5,079,391 + -2.8 5,079,391 + -3.6 5,079,391 + -0.0 5,079,391 + -1.4 5,079,391 + +3.0 5,079,391 + +2.6 5,079,391 + +0.8 5,079,391 + -0.0 5,079,391 + +1.6 5,079,391 + +1.1 5,079,392 - +3.2 5,079,392 - -0.3 5,079,392 - +1.4 5,079,392 - +2.4 5,079,392 - +0.8 5,079,392 - -3.3 5,079,410 + +0.5 5,079,410 + +3.0 5,079,427 + -0.2 5,079,427 + -0.2 5,079,428 - +0.4 5,079,441 + -1.2 5,079,442 - -1.9 5,079,442 - -1.3 5,079,442 - +0.1
Or see this region's nucleotide sequence