Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4951.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4948.1 and Xcc-8004.4949.1 are separated by 115 nucleotidesXcc-8004.4949.1 and Xcc-8004.4950.1 are separated by 3 nucleotidesXcc-8004.4950.1 and Xcc-8004.4951.1 overlap by 4 nucleotidesXcc-8004.4951.1 and Xcc-8004.4952.1 are separated by 90 nucleotides Xcc-8004.4948.1: Xcc-8004.4948.1 - Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain, at 4,701,660 to 4,703,096 Xcc-8004.4948.1 Xcc-8004.4949.1: Xcc-8004.4949.1 - FIG01210443: hypothetical protein, at 4,703,212 to 4,703,574 Xcc-8004.4949.1 Xcc-8004.4950.1: Xcc-8004.4950.1 - FIG01211151: hypothetical protein, at 4,703,578 to 4,704,081 Xcc-8004.4950.1 Xcc-8004.4951.1: Xcc-8004.4951.1 - FIG01210986: hypothetical protein, at 4,704,078 to 4,704,557 Xcc-8004.4951.1 Xcc-8004.4952.1: Xcc-8004.4952.1 - transport protein, at 4,704,648 to 4,705,754 Xcc-8004.4952.1 Position (kb) 4704 4705Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4703.125 kb on + strandat 4703.125 kb on + strandat 4703.135 kb on + strandat 4703.136 kb on - strandat 4703.151 kb on + strandat 4703.151 kb on + strandat 4703.151 kb on + strandat 4703.151 kb on + strandat 4703.151 kb on + strandat 4703.151 kb on + strandat 4703.151 kb on + strandat 4703.152 kb on - strandat 4703.152 kb on - strandat 4703.152 kb on - strandat 4703.152 kb on - strandat 4703.157 kb on + strandat 4703.199 kb on + strandat 4703.199 kb on + strandat 4703.199 kb on + strandat 4703.199 kb on + strandat 4703.199 kb on + strandat 4703.199 kb on + strandat 4703.200 kb on - strandat 4703.200 kb on - strandat 4703.200 kb on - strandat 4703.200 kb on - strandat 4703.200 kb on - strandat 4703.206 kb on + strandat 4703.207 kb on - strandat 4703.560 kb on - strandat 4703.572 kb on + strandat 4703.572 kb on + strandat 4703.572 kb on + strandat 4703.572 kb on + strandat 4703.572 kb on + strandat 4703.572 kb on + strandat 4703.572 kb on + strandat 4703.572 kb on + strandat 4703.573 kb on - strandat 4703.573 kb on - strandat 4703.573 kb on - strandat 4703.573 kb on - strandat 4703.573 kb on - strandat 4703.573 kb on - strandat 4703.573 kb on - strandat 4703.573 kb on - strandat 4703.573 kb on - strandat 4703.595 kb on + strandat 4703.595 kb on + strandat 4703.595 kb on + strandat 4703.596 kb on - strandat 4703.596 kb on - strandat 4703.596 kb on - strandat 4703.596 kb on - strandat 4703.596 kb on - strandat 4703.658 kb on - strand, within Xcc-8004.4950.1at 4703.658 kb on - strand, within Xcc-8004.4950.1at 4703.658 kb on - strand, within Xcc-8004.4950.1at 4703.658 kb on - strand, within Xcc-8004.4950.1at 4703.947 kb on + strand, within Xcc-8004.4950.1at 4703.947 kb on + strand, within Xcc-8004.4950.1at 4703.948 kb on - strand, within Xcc-8004.4950.1at 4703.948 kb on - strand, within Xcc-8004.4950.1at 4703.948 kb on - strand, within Xcc-8004.4950.1at 4703.948 kb on - strand, within Xcc-8004.4950.1at 4703.948 kb on - strand, within Xcc-8004.4950.1at 4704.502 kb on - strand, within Xcc-8004.4951.1at 4704.502 kb on - strand, within Xcc-8004.4951.1at 4704.502 kb on - strand, within Xcc-8004.4951.1at 4704.603 kb on + strandat 4704.603 kb on + strandat 4704.604 kb on - strandat 4704.604 kb on - strandat 4704.604 kb on - strandat 4704.604 kb on - strandat 4704.604 kb on - strandat 4704.604 kb on - strandat 4704.768 kb on + strand, within Xcc-8004.4952.1at 4704.768 kb on + strand, within Xcc-8004.4952.1at 4704.769 kb on - strand, within Xcc-8004.4952.1at 4704.769 kb on - strand, within Xcc-8004.4952.1at 4704.867 kb on + strand, within Xcc-8004.4952.1at 4704.867 kb on + strand, within Xcc-8004.4952.1at 4704.867 kb on + strand, within Xcc-8004.4952.1at 4704.867 kb on + strand, within Xcc-8004.4952.1at 4704.867 kb on + strand, within Xcc-8004.4952.1at 4704.867 kb on + strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4704.868 kb on - strand, within Xcc-8004.4952.1at 4705.206 kb on + strand, within Xcc-8004.4952.1at 4705.206 kb on + strand, within Xcc-8004.4952.1at 4705.206 kb on + strand, within Xcc-8004.4952.1at 4705.206 kb on + strand, within Xcc-8004.4952.1at 4705.206 kb on + strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.207 kb on - strand, within Xcc-8004.4952.1at 4705.311 kb on + strand, within Xcc-8004.4952.1at 4705.311 kb on + strand, within Xcc-8004.4952.1at 4705.312 kb on - strand, within Xcc-8004.4952.1at 4705.312 kb on - strand, within Xcc-8004.4952.1at 4705.337 kb on + strand, within Xcc-8004.4952.1at 4705.337 kb on + strand, within Xcc-8004.4952.1at 4705.338 kb on - strand, within Xcc-8004.4952.1at 4705.338 kb on - strand, within Xcc-8004.4952.1at 4705.355 kb on - strand, within Xcc-8004.4952.1at 4705.375 kb on + strand, within Xcc-8004.4952.1at 4705.376 kb on - strand, within Xcc-8004.4952.1at 4705.376 kb on - strand, within Xcc-8004.4952.1at 4705.443 kb on + strand, within Xcc-8004.4952.1at 4705.443 kb on + strand, within Xcc-8004.4952.1at 4705.443 kb on + strand, within Xcc-8004.4952.1at 4705.444 kb on - strand, within Xcc-8004.4952.1at 4705.536 kb on + strand, within Xcc-8004.4952.1at 4705.536 kb on + strand, within Xcc-8004.4952.1at 4705.537 kb on - strand, within Xcc-8004.4952.1at 4705.540 kb on + strand, within Xcc-8004.4952.1at 4705.540 kb on + strand, within Xcc-8004.4952.1at 4705.541 kb on - strand, within Xcc-8004.4952.1at 4705.541 kb on - strand, within Xcc-8004.4952.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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4,703,125 + +1.5
4,703,125 + -0.9
4,703,135 + +1.4
4,703,136 - -0.6
4,703,151 + +0.1
4,703,151 + +0.6
4,703,151 + +0.9
4,703,151 + -1.0
4,703,151 + -0.3
4,703,151 + +0.7
4,703,151 + +4.5
4,703,152 - +0.7
4,703,152 - +0.5
4,703,152 - -1.0
4,703,152 - +0.0
4,703,157 + +0.6
4,703,199 + -0.9
4,703,199 + -0.2
4,703,199 + +1.5
4,703,199 + +1.5
4,703,199 + -1.6
4,703,199 + -2.6
4,703,200 - +0.6
4,703,200 - +1.0
4,703,200 - -1.2
4,703,200 - -0.9
4,703,200 - -1.9
4,703,206 + +3.6
4,703,207 - +0.5
4,703,560 - +0.1
4,703,572 + +0.5
4,703,572 + -2.1
4,703,572 + -0.1
4,703,572 + -0.4
4,703,572 + +0.9
4,703,572 + -1.5
4,703,572 + +0.7
4,703,572 + -1.1
4,703,573 - -0.5
4,703,573 - -0.1
4,703,573 - -1.9
4,703,573 - +1.7
4,703,573 - +1.3
4,703,573 - +0.0
4,703,573 - +1.3
4,703,573 - +1.7
4,703,573 - +0.5
4,703,595 + +1.7
4,703,595 + +0.1
4,703,595 + -0.2
4,703,596 - +0.1
4,703,596 - +0.7
4,703,596 - +0.7
4,703,596 - +0.1
4,703,596 - +1.3
4,703,658 - Xcc-8004.4950.1 0.16 +1.8
4,703,658 - Xcc-8004.4950.1 0.16 -0.3
4,703,658 - Xcc-8004.4950.1 0.16 +1.0
4,703,658 - Xcc-8004.4950.1 0.16 +0.2
4,703,947 + Xcc-8004.4950.1 0.73 -0.6
4,703,947 + Xcc-8004.4950.1 0.73 +0.5
4,703,948 - Xcc-8004.4950.1 0.73 -0.5
4,703,948 - Xcc-8004.4950.1 0.73 -0.0
4,703,948 - Xcc-8004.4950.1 0.73 -0.3
4,703,948 - Xcc-8004.4950.1 0.73 -1.3
4,703,948 - Xcc-8004.4950.1 0.73 -1.5
4,704,502 - Xcc-8004.4951.1 0.88 -1.6
4,704,502 - Xcc-8004.4951.1 0.88 -1.7
4,704,502 - Xcc-8004.4951.1 0.88 +2.0
4,704,603 + +0.9
4,704,603 + -0.3
4,704,604 - +0.7
4,704,604 - -0.3
4,704,604 - +1.0
4,704,604 - -1.5
4,704,604 - +0.7
4,704,604 - +1.2
4,704,768 + Xcc-8004.4952.1 0.11 -1.6
4,704,768 + Xcc-8004.4952.1 0.11 +3.1
4,704,769 - Xcc-8004.4952.1 0.11 +0.2
4,704,769 - Xcc-8004.4952.1 0.11 -1.3
4,704,867 + Xcc-8004.4952.1 0.20 -0.9
4,704,867 + Xcc-8004.4952.1 0.20 -1.5
4,704,867 + Xcc-8004.4952.1 0.20 +1.6
4,704,867 + Xcc-8004.4952.1 0.20 -1.6
4,704,867 + Xcc-8004.4952.1 0.20 +1.5
4,704,867 + Xcc-8004.4952.1 0.20 +2.5
4,704,868 - Xcc-8004.4952.1 0.20 +0.5
4,704,868 - Xcc-8004.4952.1 0.20 +0.1
4,704,868 - Xcc-8004.4952.1 0.20 -0.3
4,704,868 - Xcc-8004.4952.1 0.20 -2.4
4,704,868 - Xcc-8004.4952.1 0.20 -0.3
4,704,868 - Xcc-8004.4952.1 0.20 +1.7
4,704,868 - Xcc-8004.4952.1 0.20 +0.5
4,704,868 - Xcc-8004.4952.1 0.20 +3.0
4,704,868 - Xcc-8004.4952.1 0.20 +1.1
4,704,868 - Xcc-8004.4952.1 0.20 +0.4
4,704,868 - Xcc-8004.4952.1 0.20 -0.2
4,704,868 - Xcc-8004.4952.1 0.20 +0.7
4,704,868 - Xcc-8004.4952.1 0.20 -1.7
4,704,868 - Xcc-8004.4952.1 0.20 +1.3
4,705,206 + Xcc-8004.4952.1 0.50 +2.5
4,705,206 + Xcc-8004.4952.1 0.50 +2.3
4,705,206 + Xcc-8004.4952.1 0.50 -1.0
4,705,206 + Xcc-8004.4952.1 0.50 +1.7
4,705,206 + Xcc-8004.4952.1 0.50 +1.8
4,705,207 - Xcc-8004.4952.1 0.50 +0.2
4,705,207 - Xcc-8004.4952.1 0.50 -1.7
4,705,207 - Xcc-8004.4952.1 0.50 -0.2
4,705,207 - Xcc-8004.4952.1 0.50 -0.0
4,705,207 - Xcc-8004.4952.1 0.50 -1.9
4,705,207 - Xcc-8004.4952.1 0.50 -0.3
4,705,207 - Xcc-8004.4952.1 0.50 +1.0
4,705,311 + Xcc-8004.4952.1 0.60 +1.3
4,705,311 + Xcc-8004.4952.1 0.60 +0.7
4,705,312 - Xcc-8004.4952.1 0.60 -1.0
4,705,312 - Xcc-8004.4952.1 0.60 +2.0
4,705,337 + Xcc-8004.4952.1 0.62 +0.8
4,705,337 + Xcc-8004.4952.1 0.62 +1.7
4,705,338 - Xcc-8004.4952.1 0.62 -0.0
4,705,338 - Xcc-8004.4952.1 0.62 +1.5
4,705,355 - Xcc-8004.4952.1 0.64 +0.1
4,705,375 + Xcc-8004.4952.1 0.66 -1.3
4,705,376 - Xcc-8004.4952.1 0.66 +3.0
4,705,376 - Xcc-8004.4952.1 0.66 -0.9
4,705,443 + Xcc-8004.4952.1 0.72 -0.1
4,705,443 + Xcc-8004.4952.1 0.72 -2.3
4,705,443 + Xcc-8004.4952.1 0.72 +1.1
4,705,444 - Xcc-8004.4952.1 0.72 -0.4
4,705,536 + Xcc-8004.4952.1 0.80 -0.7
4,705,536 + Xcc-8004.4952.1 0.80 +0.1
4,705,537 - Xcc-8004.4952.1 0.80 -0.5
4,705,540 + Xcc-8004.4952.1 0.81 +0.2
4,705,540 + Xcc-8004.4952.1 0.81 -0.1
4,705,541 - Xcc-8004.4952.1 0.81 +0.1
4,705,541 - Xcc-8004.4952.1 0.81 +3.0

Or see this region's nucleotide sequence