Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4840.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4838.1 and Xcc-8004.4839.1 are separated by 10 nucleotidesXcc-8004.4839.1 and Xcc-8004.4840.1 are separated by 27 nucleotidesXcc-8004.4840.1 and Xcc-8004.4841.1 are separated by 60 nucleotidesXcc-8004.4841.1 and Xcc-8004.4842.1 are separated by 96 nucleotides Xcc-8004.4838.1: Xcc-8004.4838.1 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 4,602,883 to 4,604,046 Xcc-8004.4838.1 Xcc-8004.4839.1: Xcc-8004.4839.1 - FIG01211359: hypothetical protein, at 4,604,057 to 4,604,632 Xcc-8004.4839.1 Xcc-8004.4840.1: Xcc-8004.4840.1 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 4,604,660 to 4,605,385 Xcc-8004.4840.1 Xcc-8004.4841.1: Xcc-8004.4841.1 - FIG01212439: hypothetical protein, at 4,605,446 to 4,605,664 Xcc-8004.4841.1 Xcc-8004.4842.1: Xcc-8004.4842.1 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 4,605,761 to 4,606,636 Xcc-8004.4842.1 Position (kb) 4604 4605 4606Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.667 kb on + strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.668 kb on - strand, within Xcc-8004.4838.1at 4603.849 kb on + strand, within Xcc-8004.4838.1at 4603.849 kb on + strand, within Xcc-8004.4838.1at 4603.898 kb on + strand, within Xcc-8004.4838.1at 4603.899 kb on - strand, within Xcc-8004.4838.1at 4604.122 kb on - strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.157 kb on + strand, within Xcc-8004.4839.1at 4604.158 kb on - strand, within Xcc-8004.4839.1at 4604.158 kb on - strand, within Xcc-8004.4839.1at 4604.158 kb on - strand, within Xcc-8004.4839.1at 4604.418 kb on + strand, within Xcc-8004.4839.1at 4604.418 kb on + strand, within Xcc-8004.4839.1at 4604.792 kb on + strand, within Xcc-8004.4840.1at 4604.793 kb on - strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.812 kb on - strand, within Xcc-8004.4840.1at 4604.812 kb on - strand, within Xcc-8004.4840.1at 4605.170 kb on + strand, within Xcc-8004.4840.1at 4605.170 kb on + strand, within Xcc-8004.4840.1at 4605.171 kb on - strand, within Xcc-8004.4840.1at 4605.498 kb on + strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.521 kb on + strand, within Xcc-8004.4841.1at 4605.521 kb on + strand, within Xcc-8004.4841.1at 4605.525 kb on - strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.627 kb on - strand, within Xcc-8004.4841.1at 4605.627 kb on - strand, within Xcc-8004.4841.1at 4605.627 kb on - strand, within Xcc-8004.4841.1at 4605.749 kb on + strandat 4605.749 kb on + strandat 4605.750 kb on - strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.819 kb on + strandat 4605.820 kb on - strandat 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.239 kb on + strand, within Xcc-8004.4842.1at 4606.318 kb on - strand, within Xcc-8004.4842.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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4,603,667 + Xcc-8004.4838.1 0.67 +0.8
4,603,667 + Xcc-8004.4838.1 0.67 -0.8
4,603,667 + Xcc-8004.4838.1 0.67 +0.2
4,603,667 + Xcc-8004.4838.1 0.67 -1.0
4,603,667 + Xcc-8004.4838.1 0.67 -0.4
4,603,667 + Xcc-8004.4838.1 0.67 +0.5
4,603,668 - Xcc-8004.4838.1 0.67 -0.2
4,603,668 - Xcc-8004.4838.1 0.67 -0.5
4,603,668 - Xcc-8004.4838.1 0.67 -0.1
4,603,668 - Xcc-8004.4838.1 0.67 +0.5
4,603,668 - Xcc-8004.4838.1 0.67 +0.2
4,603,668 - Xcc-8004.4838.1 0.67 +1.4
4,603,668 - Xcc-8004.4838.1 0.67 -0.4
4,603,668 - Xcc-8004.4838.1 0.67 +1.9
4,603,668 - Xcc-8004.4838.1 0.67 -0.8
4,603,849 + Xcc-8004.4838.1 0.83 -0.7
4,603,849 + Xcc-8004.4838.1 0.83 -1.2
4,603,898 + Xcc-8004.4838.1 0.87 +0.2
4,603,899 - Xcc-8004.4838.1 0.87 +0.4
4,604,122 - Xcc-8004.4839.1 0.11 +0.2
4,604,157 + Xcc-8004.4839.1 0.17 -0.2
4,604,157 + Xcc-8004.4839.1 0.17 -2.1
4,604,157 + Xcc-8004.4839.1 0.17 -0.6
4,604,157 + Xcc-8004.4839.1 0.17 +0.5
4,604,157 + Xcc-8004.4839.1 0.17 +0.7
4,604,157 + Xcc-8004.4839.1 0.17 +0.8
4,604,157 + Xcc-8004.4839.1 0.17 -0.7
4,604,157 + Xcc-8004.4839.1 0.17 -3.7
4,604,157 + Xcc-8004.4839.1 0.17 +1.5
4,604,158 - Xcc-8004.4839.1 0.18 +0.4
4,604,158 - Xcc-8004.4839.1 0.18 +1.3
4,604,158 - Xcc-8004.4839.1 0.18 +0.5
4,604,418 + Xcc-8004.4839.1 0.63 +0.3
4,604,418 + Xcc-8004.4839.1 0.63 -0.1
4,604,792 + Xcc-8004.4840.1 0.18 -1.4
4,604,793 - Xcc-8004.4840.1 0.18 -2.0
4,604,811 + Xcc-8004.4840.1 0.21 -1.8
4,604,811 + Xcc-8004.4840.1 0.21 +3.7
4,604,811 + Xcc-8004.4840.1 0.21 -0.8
4,604,811 + Xcc-8004.4840.1 0.21 +1.6
4,604,811 + Xcc-8004.4840.1 0.21 -0.9
4,604,811 + Xcc-8004.4840.1 0.21 -3.0
4,604,811 + Xcc-8004.4840.1 0.21 +0.1
4,604,812 - Xcc-8004.4840.1 0.21 +1.3
4,604,812 - Xcc-8004.4840.1 0.21 -1.7
4,605,170 + Xcc-8004.4840.1 0.70 -0.7
4,605,170 + Xcc-8004.4840.1 0.70 -1.4
4,605,171 - Xcc-8004.4840.1 0.70 +0.3
4,605,498 + Xcc-8004.4841.1 0.24 -1.0
4,605,499 - Xcc-8004.4841.1 0.24 +1.4
4,605,499 - Xcc-8004.4841.1 0.24 +1.8
4,605,499 - Xcc-8004.4841.1 0.24 +0.3
4,605,499 - Xcc-8004.4841.1 0.24 +0.6
4,605,499 - Xcc-8004.4841.1 0.24 -2.2
4,605,499 - Xcc-8004.4841.1 0.24 -0.6
4,605,499 - Xcc-8004.4841.1 0.24 -0.4
4,605,521 + Xcc-8004.4841.1 0.34 -0.6
4,605,521 + Xcc-8004.4841.1 0.34 +1.4
4,605,525 - Xcc-8004.4841.1 0.36 -0.8
4,605,626 + Xcc-8004.4841.1 0.82 -0.7
4,605,626 + Xcc-8004.4841.1 0.82 +0.0
4,605,626 + Xcc-8004.4841.1 0.82 +1.8
4,605,626 + Xcc-8004.4841.1 0.82 +1.8
4,605,626 + Xcc-8004.4841.1 0.82 +0.2
4,605,626 + Xcc-8004.4841.1 0.82 -0.8
4,605,627 - Xcc-8004.4841.1 0.83 +0.1
4,605,627 - Xcc-8004.4841.1 0.83 +0.2
4,605,627 - Xcc-8004.4841.1 0.83 -1.9
4,605,749 + +0.6
4,605,749 + -0.7
4,605,750 - -3.7
4,605,771 + -0.8
4,605,771 + -0.2
4,605,771 + +1.6
4,605,771 + -0.0
4,605,771 + +1.1
4,605,771 + -0.8
4,605,771 + +0.4
4,605,771 + -1.4
4,605,771 + +1.0
4,605,771 + -0.1
4,605,772 - -0.2
4,605,772 - -0.8
4,605,772 - +0.1
4,605,772 - +2.0
4,605,772 - -0.2
4,605,772 - -1.4
4,605,819 + +3.1
4,605,820 - -1.5
4,605,963 + Xcc-8004.4842.1 0.23 -0.6
4,605,963 + Xcc-8004.4842.1 0.23 -0.8
4,605,963 + Xcc-8004.4842.1 0.23 +0.2
4,605,963 + Xcc-8004.4842.1 0.23 -0.0
4,605,963 + Xcc-8004.4842.1 0.23 +3.1
4,605,964 - Xcc-8004.4842.1 0.23 +0.8
4,605,964 - Xcc-8004.4842.1 0.23 +0.8
4,605,964 - Xcc-8004.4842.1 0.23 +0.8
4,605,964 - Xcc-8004.4842.1 0.23 -0.2
4,605,964 - Xcc-8004.4842.1 0.23 -1.0
4,605,964 - Xcc-8004.4842.1 0.23 -0.8
4,606,011 + Xcc-8004.4842.1 0.29 -0.6
4,606,011 + Xcc-8004.4842.1 0.29 -0.7
4,606,011 + Xcc-8004.4842.1 0.29 -0.8
4,606,011 + Xcc-8004.4842.1 0.29 -2.0
4,606,012 - Xcc-8004.4842.1 0.29 -1.9
4,606,012 - Xcc-8004.4842.1 0.29 +0.8
4,606,012 - Xcc-8004.4842.1 0.29 -0.0
4,606,012 - Xcc-8004.4842.1 0.29 +0.5
4,606,012 - Xcc-8004.4842.1 0.29 -2.2
4,606,239 + Xcc-8004.4842.1 0.55 +0.3
4,606,318 - Xcc-8004.4842.1 0.64 -1.2

Or see this region's nucleotide sequence