Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4774.1 and Xcc-8004.4775.1 are separated by 8 nucleotides Xcc-8004.4775.1 and Xcc-8004.4776.1 overlap by 4 nucleotides Xcc-8004.4776.1 and Xcc-8004.4777.1 are separated by 75 nucleotides
Xcc-8004.4774.1: Xcc-8004.4774.1 - Response regulator protein, at 4,542,448 to 4,543,290
Xcc-8004.4774.1
Xcc-8004.4775.1: Xcc-8004.4775.1 - Cell division protein FtsX, at 4,543,299 to 4,544,249
Xcc-8004.4775.1
Xcc-8004.4776.1: Xcc-8004.4776.1 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,544,246 to 4,544,932
Xcc-8004.4776.1
Xcc-8004.4777.1: Xcc-8004.4777.1 - ATP-dependent RNA helicase RhlB, at 4,545,008 to 4,546,777
Xcc-8004.4777.1
Position (kb) 4544
4545 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4543.376 kb on + strand at 4543.424 kb on + strand, within Xcc-8004.4775.1 at 4543.424 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.438 kb on + strand, within Xcc-8004.4775.1 at 4543.439 kb on - strand, within Xcc-8004.4775.1 at 4543.439 kb on - strand, within Xcc-8004.4775.1 at 4543.439 kb on - strand, within Xcc-8004.4775.1 at 4543.439 kb on - strand, within Xcc-8004.4775.1 at 4543.439 kb on - strand, within Xcc-8004.4775.1 at 4543.466 kb on + strand, within Xcc-8004.4775.1 at 4543.466 kb on + strand, within Xcc-8004.4775.1 at 4543.467 kb on - strand, within Xcc-8004.4775.1 at 4543.467 kb on - strand, within Xcc-8004.4775.1 at 4543.544 kb on - strand, within Xcc-8004.4775.1 at 4543.544 kb on - strand, within Xcc-8004.4775.1 at 4543.623 kb on - strand, within Xcc-8004.4775.1 at 4543.637 kb on + strand, within Xcc-8004.4775.1 at 4543.638 kb on - strand, within Xcc-8004.4775.1 at 4543.638 kb on - strand, within Xcc-8004.4775.1 at 4543.723 kb on - strand, within Xcc-8004.4775.1 at 4543.723 kb on - strand, within Xcc-8004.4775.1 at 4543.723 kb on - strand, within Xcc-8004.4775.1 at 4543.838 kb on + strand, within Xcc-8004.4775.1 at 4543.838 kb on + strand, within Xcc-8004.4775.1 at 4543.839 kb on - strand, within Xcc-8004.4775.1 at 4543.839 kb on - strand, within Xcc-8004.4775.1 at 4543.839 kb on - strand, within Xcc-8004.4775.1 at 4543.839 kb on - strand, within Xcc-8004.4775.1 at 4543.839 kb on - strand, within Xcc-8004.4775.1 at 4544.043 kb on - strand, within Xcc-8004.4775.1 at 4544.043 kb on - strand, within Xcc-8004.4775.1 at 4544.043 kb on - strand, within Xcc-8004.4775.1 at 4544.673 kb on + strand, within Xcc-8004.4776.1 at 4544.673 kb on + strand, within Xcc-8004.4776.1 at 4544.673 kb on + strand, within Xcc-8004.4776.1 at 4544.673 kb on + strand, within Xcc-8004.4776.1 at 4544.673 kb on + strand, within Xcc-8004.4776.1 at 4544.895 kb on + strand at 4544.895 kb on + strand at 4544.895 kb on + strand at 4544.896 kb on - strand at 4544.896 kb on - strand at 4544.896 kb on - strand at 4544.896 kb on - strand at 4544.941 kb on + strand at 4544.942 kb on - strand at 4545.004 kb on + strand at 4545.004 kb on + strand at 4545.004 kb on + strand at 4545.005 kb on - strand at 4545.005 kb on - strand at 4545.005 kb on - strand at 4545.093 kb on - strand at 4545.572 kb on - strand, within Xcc-8004.4777.1 at 4545.606 kb on + strand, within Xcc-8004.4777.1 at 4545.606 kb on + strand, within Xcc-8004.4777.1 at 4545.606 kb on + strand, within Xcc-8004.4777.1 at 4545.606 kb on + strand, within Xcc-8004.4777.1 at 4545.606 kb on + strand, within Xcc-8004.4777.1 at 4545.607 kb on - strand, within Xcc-8004.4777.1 at 4545.607 kb on - strand, within Xcc-8004.4777.1 at 4545.607 kb on - strand, within Xcc-8004.4777.1 at 4545.607 kb on - strand, within Xcc-8004.4777.1 at 4545.607 kb on - strand, within Xcc-8004.4777.1 at 4545.607 kb on - strand, within Xcc-8004.4777.1 at 4545.637 kb on - strand, within Xcc-8004.4777.1 at 4545.708 kb on + strand, within Xcc-8004.4777.1 at 4545.708 kb on + strand, within Xcc-8004.4777.1 at 4545.708 kb on + strand, within Xcc-8004.4777.1 at 4545.708 kb on + strand, within Xcc-8004.4777.1 at 4545.708 kb on + strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.709 kb on - strand, within Xcc-8004.4777.1 at 4545.735 kb on + strand, within Xcc-8004.4777.1 at 4545.735 kb on + strand, within Xcc-8004.4777.1 at 4545.741 kb on + strand, within Xcc-8004.4777.1 at 4545.741 kb on + strand, within Xcc-8004.4777.1 at 4545.741 kb on + strand, within Xcc-8004.4777.1 at 4545.742 kb on - strand, within Xcc-8004.4777.1 at 4545.742 kb on - strand, within Xcc-8004.4777.1 at 4545.742 kb on - strand, within Xcc-8004.4777.1 at 4545.742 kb on - strand, within Xcc-8004.4777.1 at 4545.742 kb on - strand, within Xcc-8004.4777.1 at 4545.747 kb on + strand, within Xcc-8004.4777.1 at 4545.747 kb on + strand, within Xcc-8004.4777.1 at 4545.747 kb on + strand, within Xcc-8004.4777.1 at 4545.747 kb on + strand, within Xcc-8004.4777.1 at 4545.747 kb on + strand, within Xcc-8004.4777.1 at 4545.747 kb on + strand, within Xcc-8004.4777.1 at 4545.747 kb on + strand, within Xcc-8004.4777.1 at 4545.747 kb on + strand, within Xcc-8004.4777.1 at 4545.747 kb on + strand, within Xcc-8004.4777.1 at 4545.748 kb on - strand, within Xcc-8004.4777.1 at 4545.748 kb on - strand, within Xcc-8004.4777.1 at 4545.748 kb on - strand, within Xcc-8004.4777.1 at 4545.748 kb on - strand, within Xcc-8004.4777.1 at 4545.748 kb on - strand, within Xcc-8004.4777.1 at 4545.748 kb on - strand, within Xcc-8004.4777.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 4,543,376 + -1.6 4,543,424 + Xcc-8004.4775.1 0.13 +1.3 4,543,424 + Xcc-8004.4775.1 0.13 -2.0 4,543,438 + Xcc-8004.4775.1 0.15 -1.4 4,543,438 + Xcc-8004.4775.1 0.15 -0.7 4,543,438 + Xcc-8004.4775.1 0.15 -0.6 4,543,438 + Xcc-8004.4775.1 0.15 -2.0 4,543,438 + Xcc-8004.4775.1 0.15 -0.8 4,543,438 + Xcc-8004.4775.1 0.15 -1.7 4,543,438 + Xcc-8004.4775.1 0.15 +0.2 4,543,438 + Xcc-8004.4775.1 0.15 +0.2 4,543,439 - Xcc-8004.4775.1 0.15 -3.1 4,543,439 - Xcc-8004.4775.1 0.15 -0.0 4,543,439 - Xcc-8004.4775.1 0.15 +0.5 4,543,439 - Xcc-8004.4775.1 0.15 -2.6 4,543,439 - Xcc-8004.4775.1 0.15 -2.9 4,543,466 + Xcc-8004.4775.1 0.18 +1.8 4,543,466 + Xcc-8004.4775.1 0.18 -1.0 4,543,467 - Xcc-8004.4775.1 0.18 -1.0 4,543,467 - Xcc-8004.4775.1 0.18 -1.8 4,543,544 - Xcc-8004.4775.1 0.26 +0.5 4,543,544 - Xcc-8004.4775.1 0.26 -0.6 4,543,623 - Xcc-8004.4775.1 0.34 +0.8 4,543,637 + Xcc-8004.4775.1 0.36 +3.6 4,543,638 - Xcc-8004.4775.1 0.36 -1.6 4,543,638 - Xcc-8004.4775.1 0.36 +0.7 4,543,723 - Xcc-8004.4775.1 0.45 -1.3 4,543,723 - Xcc-8004.4775.1 0.45 -2.7 4,543,723 - Xcc-8004.4775.1 0.45 -1.9 4,543,838 + Xcc-8004.4775.1 0.57 -1.6 4,543,838 + Xcc-8004.4775.1 0.57 -0.2 4,543,839 - Xcc-8004.4775.1 0.57 -1.0 4,543,839 - Xcc-8004.4775.1 0.57 -1.2 4,543,839 - Xcc-8004.4775.1 0.57 -2.3 4,543,839 - Xcc-8004.4775.1 0.57 +1.6 4,543,839 - Xcc-8004.4775.1 0.57 -2.1 4,544,043 - Xcc-8004.4775.1 0.78 -0.4 4,544,043 - Xcc-8004.4775.1 0.78 -1.1 4,544,043 - Xcc-8004.4775.1 0.78 -1.0 4,544,673 + Xcc-8004.4776.1 0.62 -2.4 4,544,673 + Xcc-8004.4776.1 0.62 -0.8 4,544,673 + Xcc-8004.4776.1 0.62 -0.8 4,544,673 + Xcc-8004.4776.1 0.62 -2.4 4,544,673 + Xcc-8004.4776.1 0.62 -0.1 4,544,895 + -0.8 4,544,895 + -1.3 4,544,895 + -0.2 4,544,896 - -1.3 4,544,896 - -1.5 4,544,896 - -1.1 4,544,896 - -1.6 4,544,941 + +3.5 4,544,942 - +0.2 4,545,004 + -0.9 4,545,004 + -1.0 4,545,004 + -1.2 4,545,005 - -2.9 4,545,005 - -0.2 4,545,005 - +2.5 4,545,093 - -0.2 4,545,572 - Xcc-8004.4777.1 0.32 +0.6 4,545,606 + Xcc-8004.4777.1 0.34 -0.8 4,545,606 + Xcc-8004.4777.1 0.34 -1.8 4,545,606 + Xcc-8004.4777.1 0.34 -2.5 4,545,606 + Xcc-8004.4777.1 0.34 -2.8 4,545,606 + Xcc-8004.4777.1 0.34 +1.2 4,545,607 - Xcc-8004.4777.1 0.34 -1.2 4,545,607 - Xcc-8004.4777.1 0.34 +0.4 4,545,607 - Xcc-8004.4777.1 0.34 -0.8 4,545,607 - Xcc-8004.4777.1 0.34 +0.6 4,545,607 - Xcc-8004.4777.1 0.34 -3.1 4,545,607 - Xcc-8004.4777.1 0.34 +0.8 4,545,637 - Xcc-8004.4777.1 0.36 -2.9 4,545,708 + Xcc-8004.4777.1 0.40 +1.5 4,545,708 + Xcc-8004.4777.1 0.40 +0.4 4,545,708 + Xcc-8004.4777.1 0.40 -1.8 4,545,708 + Xcc-8004.4777.1 0.40 -1.7 4,545,708 + Xcc-8004.4777.1 0.40 -1.0 4,545,709 - Xcc-8004.4777.1 0.40 +0.8 4,545,709 - Xcc-8004.4777.1 0.40 -1.2 4,545,709 - Xcc-8004.4777.1 0.40 -1.0 4,545,709 - Xcc-8004.4777.1 0.40 +2.1 4,545,709 - Xcc-8004.4777.1 0.40 -2.2 4,545,709 - Xcc-8004.4777.1 0.40 -0.6 4,545,709 - Xcc-8004.4777.1 0.40 +1.0 4,545,709 - Xcc-8004.4777.1 0.40 -1.1 4,545,709 - Xcc-8004.4777.1 0.40 -2.0 4,545,709 - Xcc-8004.4777.1 0.40 +0.2 4,545,709 - Xcc-8004.4777.1 0.40 -1.3 4,545,709 - Xcc-8004.4777.1 0.40 -2.2 4,545,735 + Xcc-8004.4777.1 0.41 -0.5 4,545,735 + Xcc-8004.4777.1 0.41 -1.0 4,545,741 + Xcc-8004.4777.1 0.41 +0.8 4,545,741 + Xcc-8004.4777.1 0.41 +0.8 4,545,741 + Xcc-8004.4777.1 0.41 -1.6 4,545,742 - Xcc-8004.4777.1 0.41 -1.5 4,545,742 - Xcc-8004.4777.1 0.41 -2.0 4,545,742 - Xcc-8004.4777.1 0.41 +0.9 4,545,742 - Xcc-8004.4777.1 0.41 -0.8 4,545,742 - Xcc-8004.4777.1 0.41 -1.0 4,545,747 + Xcc-8004.4777.1 0.42 -0.8 4,545,747 + Xcc-8004.4777.1 0.42 -0.0 4,545,747 + Xcc-8004.4777.1 0.42 -1.8 4,545,747 + Xcc-8004.4777.1 0.42 -0.8 4,545,747 + Xcc-8004.4777.1 0.42 -1.6 4,545,747 + Xcc-8004.4777.1 0.42 +2.8 4,545,747 + Xcc-8004.4777.1 0.42 -1.9 4,545,747 + Xcc-8004.4777.1 0.42 -2.7 4,545,747 + Xcc-8004.4777.1 0.42 +1.8 4,545,748 - Xcc-8004.4777.1 0.42 -3.1 4,545,748 - Xcc-8004.4777.1 0.42 -0.6 4,545,748 - Xcc-8004.4777.1 0.42 -2.4 4,545,748 - Xcc-8004.4777.1 0.42 +0.3 4,545,748 - Xcc-8004.4777.1 0.42 -0.6 4,545,748 - Xcc-8004.4777.1 0.42 -0.2
Or see this region's nucleotide sequence