Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4739.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4737.1 and Xcc-8004.4738.1 are separated by 3 nucleotidesXcc-8004.4738.1 and Xcc-8004.4739.1 overlap by 16 nucleotidesXcc-8004.4739.1 and Xcc-8004.4740.1 are separated by 139 nucleotides Xcc-8004.4737.1: Xcc-8004.4737.1 - Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis, at 4,507,218 to 4,508,273 Xcc-8004.4737.1 Xcc-8004.4738.1: Xcc-8004.4738.1 - Lipopolysaccharide core biosynthesis glycosyl transferase, at 4,508,277 to 4,509,101 Xcc-8004.4738.1 Xcc-8004.4739.1: Xcc-8004.4739.1 - Lipid A core - O-antigen ligase and related enzymes, at 4,509,086 to 4,510,375 Xcc-8004.4739.1 Xcc-8004.4740.1: Xcc-8004.4740.1 - Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB, at 4,510,515 to 4,512,236 Xcc-8004.4740.1 Position (kb) 4509 4510 4511Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4508.202 kb on + strandat 4508.202 kb on + strandat 4508.202 kb on + strandat 4508.203 kb on - strandat 4508.228 kb on + strandat 4508.229 kb on - strandat 4508.229 kb on - strandat 4508.263 kb on + strandat 4508.263 kb on + strandat 4508.264 kb on - strandat 4508.264 kb on - strandat 4508.264 kb on - strandat 4508.486 kb on + strand, within Xcc-8004.4738.1at 4508.646 kb on + strand, within Xcc-8004.4738.1at 4508.647 kb on - strand, within Xcc-8004.4738.1at 4508.808 kb on + strand, within Xcc-8004.4738.1at 4508.847 kb on + strand, within Xcc-8004.4738.1at 4508.943 kb on + strand, within Xcc-8004.4738.1at 4508.943 kb on + strand, within Xcc-8004.4738.1at 4508.944 kb on - strand, within Xcc-8004.4738.1at 4508.988 kb on + strand, within Xcc-8004.4738.1at 4508.988 kb on + strand, within Xcc-8004.4738.1at 4508.988 kb on + strand, within Xcc-8004.4738.1at 4508.989 kb on - strand, within Xcc-8004.4738.1at 4508.989 kb on - strand, within Xcc-8004.4738.1at 4508.989 kb on - strand, within Xcc-8004.4738.1at 4508.995 kb on - strand, within Xcc-8004.4738.1at 4508.995 kb on - strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.998 kb on + strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4508.999 kb on - strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.009 kb on + strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.010 kb on - strand, within Xcc-8004.4738.1at 4509.180 kb on + strandat 4509.237 kb on + strand, within Xcc-8004.4739.1at 4509.238 kb on - strand, within Xcc-8004.4739.1at 4509.336 kb on + strand, within Xcc-8004.4739.1at 4509.337 kb on - strand, within Xcc-8004.4739.1at 4509.337 kb on - strand, within Xcc-8004.4739.1at 4509.367 kb on + strand, within Xcc-8004.4739.1at 4509.368 kb on - strand, within Xcc-8004.4739.1at 4510.023 kb on + strand, within Xcc-8004.4739.1at 4510.023 kb on + strand, within Xcc-8004.4739.1at 4510.023 kb on + strand, within Xcc-8004.4739.1at 4510.023 kb on + strand, within Xcc-8004.4739.1at 4510.023 kb on + strand, within Xcc-8004.4739.1at 4510.024 kb on - strand, within Xcc-8004.4739.1at 4510.024 kb on - strand, within Xcc-8004.4739.1at 4510.024 kb on - strand, within Xcc-8004.4739.1at 4510.024 kb on - strand, within Xcc-8004.4739.1at 4510.437 kb on + strandat 4510.437 kb on + strandat 4510.438 kb on - strandat 4510.463 kb on + strandat 4510.473 kb on + strandat 4510.473 kb on + strandat 4510.473 kb on + strandat 4510.473 kb on + strandat 4510.473 kb on + strandat 4510.473 kb on + strandat 4510.473 kb on + strandat 4510.474 kb on - strandat 4510.474 kb on - strandat 4510.474 kb on - strandat 4511.257 kb on + strand, within Xcc-8004.4740.1at 4511.257 kb on + strand, within Xcc-8004.4740.1at 4511.257 kb on + strand, within Xcc-8004.4740.1at 4511.257 kb on + strand, within Xcc-8004.4740.1at 4511.257 kb on + strand, within Xcc-8004.4740.1at 4511.257 kb on + strand, within Xcc-8004.4740.1at 4511.257 kb on + strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.329 kb on + strand, within Xcc-8004.4740.1at 4511.330 kb on - strand, within Xcc-8004.4740.1at 4511.330 kb on - strand, within Xcc-8004.4740.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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4,508,202 + -0.3
4,508,202 + -3.2
4,508,202 + -1.6
4,508,203 - -1.3
4,508,228 + -1.6
4,508,229 - +2.2
4,508,229 - -1.6
4,508,263 + -1.0
4,508,263 + -2.6
4,508,264 - +0.6
4,508,264 - -0.4
4,508,264 - +0.7
4,508,486 + Xcc-8004.4738.1 0.25 -1.3
4,508,646 + Xcc-8004.4738.1 0.45 -2.7
4,508,647 - Xcc-8004.4738.1 0.45 -1.3
4,508,808 + Xcc-8004.4738.1 0.64 -4.0
4,508,847 + Xcc-8004.4738.1 0.69 -2.3
4,508,943 + Xcc-8004.4738.1 0.81 -0.9
4,508,943 + Xcc-8004.4738.1 0.81 -2.3
4,508,944 - Xcc-8004.4738.1 0.81 -0.9
4,508,988 + Xcc-8004.4738.1 0.86 -2.1
4,508,988 + Xcc-8004.4738.1 0.86 -0.9
4,508,988 + Xcc-8004.4738.1 0.86 -2.5
4,508,989 - Xcc-8004.4738.1 0.86 -2.7
4,508,989 - Xcc-8004.4738.1 0.86 -2.9
4,508,989 - Xcc-8004.4738.1 0.86 -2.3
4,508,995 - Xcc-8004.4738.1 0.87 -4.0
4,508,995 - Xcc-8004.4738.1 0.87 +0.7
4,508,998 + Xcc-8004.4738.1 0.87 -1.6
4,508,998 + Xcc-8004.4738.1 0.87 -1.6
4,508,998 + Xcc-8004.4738.1 0.87 -2.5
4,508,998 + Xcc-8004.4738.1 0.87 +0.7
4,508,998 + Xcc-8004.4738.1 0.87 -3.2
4,508,998 + Xcc-8004.4738.1 0.87 -0.3
4,508,998 + Xcc-8004.4738.1 0.87 -1.6
4,508,998 + Xcc-8004.4738.1 0.87 -2.6
4,508,998 + Xcc-8004.4738.1 0.87 -0.3
4,508,998 + Xcc-8004.4738.1 0.87 -0.3
4,508,999 - Xcc-8004.4738.1 0.88 -2.3
4,508,999 - Xcc-8004.4738.1 0.88 +0.7
4,508,999 - Xcc-8004.4738.1 0.88 -2.6
4,508,999 - Xcc-8004.4738.1 0.88 -2.7
4,508,999 - Xcc-8004.4738.1 0.88 -1.6
4,508,999 - Xcc-8004.4738.1 0.88 -1.4
4,508,999 - Xcc-8004.4738.1 0.88 -2.6
4,508,999 - Xcc-8004.4738.1 0.88 -2.7
4,508,999 - Xcc-8004.4738.1 0.88 -0.3
4,508,999 - Xcc-8004.4738.1 0.88 -3.9
4,508,999 - Xcc-8004.4738.1 0.88 -3.1
4,508,999 - Xcc-8004.4738.1 0.88 -2.7
4,508,999 - Xcc-8004.4738.1 0.88 -3.1
4,508,999 - Xcc-8004.4738.1 0.88 -3.9
4,508,999 - Xcc-8004.4738.1 0.88 -3.0
4,508,999 - Xcc-8004.4738.1 0.88 -2.3
4,509,009 + Xcc-8004.4738.1 0.89 -0.3
4,509,009 + Xcc-8004.4738.1 0.89 -3.2
4,509,009 + Xcc-8004.4738.1 0.89 -2.7
4,509,009 + Xcc-8004.4738.1 0.89 -3.1
4,509,009 + Xcc-8004.4738.1 0.89 -2.1
4,509,009 + Xcc-8004.4738.1 0.89 -2.7
4,509,009 + Xcc-8004.4738.1 0.89 -2.1
4,509,009 + Xcc-8004.4738.1 0.89 +0.1
4,509,009 + Xcc-8004.4738.1 0.89 -1.3
4,509,009 + Xcc-8004.4738.1 0.89 -2.2
4,509,009 + Xcc-8004.4738.1 0.89 -0.3
4,509,009 + Xcc-8004.4738.1 0.89 -1.6
4,509,010 - Xcc-8004.4738.1 0.89 -2.6
4,509,010 - Xcc-8004.4738.1 0.89 -0.9
4,509,010 - Xcc-8004.4738.1 0.89 -2.7
4,509,010 - Xcc-8004.4738.1 0.89 -2.5
4,509,010 - Xcc-8004.4738.1 0.89 -1.9
4,509,010 - Xcc-8004.4738.1 0.89 -1.9
4,509,010 - Xcc-8004.4738.1 0.89 -1.6
4,509,010 - Xcc-8004.4738.1 0.89 +0.7
4,509,010 - Xcc-8004.4738.1 0.89 -3.0
4,509,010 - Xcc-8004.4738.1 0.89 -1.6
4,509,010 - Xcc-8004.4738.1 0.89 -0.9
4,509,010 - Xcc-8004.4738.1 0.89 -3.1
4,509,010 - Xcc-8004.4738.1 0.89 -0.9
4,509,180 + -2.5
4,509,237 + Xcc-8004.4739.1 0.12 -2.5
4,509,238 - Xcc-8004.4739.1 0.12 -2.6
4,509,336 + Xcc-8004.4739.1 0.19 -0.9
4,509,337 - Xcc-8004.4739.1 0.19 -1.3
4,509,337 - Xcc-8004.4739.1 0.19 -1.6
4,509,367 + Xcc-8004.4739.1 0.22 -1.6
4,509,368 - Xcc-8004.4739.1 0.22 -2.3
4,510,023 + Xcc-8004.4739.1 0.73 -3.3
4,510,023 + Xcc-8004.4739.1 0.73 -2.7
4,510,023 + Xcc-8004.4739.1 0.73 -0.4
4,510,023 + Xcc-8004.4739.1 0.73 -2.1
4,510,023 + Xcc-8004.4739.1 0.73 -0.9
4,510,024 - Xcc-8004.4739.1 0.73 -2.9
4,510,024 - Xcc-8004.4739.1 0.73 -1.3
4,510,024 - Xcc-8004.4739.1 0.73 -0.5
4,510,024 - Xcc-8004.4739.1 0.73 -2.5
4,510,437 + +0.2
4,510,437 + -1.9
4,510,438 - -0.5
4,510,463 + +0.7
4,510,473 + +3.1
4,510,473 + +1.3
4,510,473 + +1.5
4,510,473 + +0.1
4,510,473 + +0.1
4,510,473 + +1.1
4,510,473 + -1.6
4,510,474 - -0.2
4,510,474 - -0.9
4,510,474 - +1.0
4,511,257 + Xcc-8004.4740.1 0.43 +0.1
4,511,257 + Xcc-8004.4740.1 0.43 -0.0
4,511,257 + Xcc-8004.4740.1 0.43 -2.7
4,511,257 + Xcc-8004.4740.1 0.43 +0.6
4,511,257 + Xcc-8004.4740.1 0.43 -2.1
4,511,257 + Xcc-8004.4740.1 0.43 -0.2
4,511,257 + Xcc-8004.4740.1 0.43 +3.5
4,511,258 - Xcc-8004.4740.1 0.43 +1.8
4,511,258 - Xcc-8004.4740.1 0.43 -0.9
4,511,258 - Xcc-8004.4740.1 0.43 -1.7
4,511,258 - Xcc-8004.4740.1 0.43 -0.9
4,511,258 - Xcc-8004.4740.1 0.43 -2.5
4,511,258 - Xcc-8004.4740.1 0.43 -1.9
4,511,258 - Xcc-8004.4740.1 0.43 -1.1
4,511,258 - Xcc-8004.4740.1 0.43 +0.0
4,511,258 - Xcc-8004.4740.1 0.43 +2.0
4,511,258 - Xcc-8004.4740.1 0.43 -0.5
4,511,258 - Xcc-8004.4740.1 0.43 +0.5
4,511,329 + Xcc-8004.4740.1 0.47 -3.1
4,511,330 - Xcc-8004.4740.1 0.47 -1.5
4,511,330 - Xcc-8004.4740.1 0.47 -0.9

Or see this region's nucleotide sequence