Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4652.1 and Xcc-8004.4653.1 are separated by 178 nucleotides Xcc-8004.4653.1 and Xcc-8004.4654.1 are separated by 189 nucleotides Xcc-8004.4654.1 and Xcc-8004.4655.1 are separated by 51 nucleotides
Xcc-8004.4652.1: Xcc-8004.4652.1 - FIG01210787: hypothetical protein, at 4,433,434 to 4,434,123
Xcc-8004.4652.1
Xcc-8004.4653.1: Xcc-8004.4653.1 - amino acid transporter, at 4,434,302 to 4,435,897
Xcc-8004.4653.1
Xcc-8004.4654.1: Xcc-8004.4654.1 - FIG01213510: hypothetical protein, at 4,436,087 to 4,436,455
Xcc-8004.4654.1
Xcc-8004.4655.1: Xcc-8004.4655.1 - Transcriptional regulator protein, at 4,436,507 to 4,437,283
Xcc-8004.4655.1
Position (kb) 4434
4435
4436 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4433.364 kb on + strand at 4433.364 kb on + strand at 4433.364 kb on + strand at 4433.365 kb on - strand at 4433.365 kb on - strand at 4433.365 kb on - strand at 4433.375 kb on - strand at 4433.456 kb on + strand at 4433.456 kb on + strand at 4433.457 kb on - strand at 4433.457 kb on - strand at 4433.462 kb on + strand at 4433.462 kb on + strand at 4433.463 kb on - strand at 4433.463 kb on - strand at 4433.463 kb on - strand at 4433.463 kb on - strand at 4433.463 kb on - strand at 4433.498 kb on + strand at 4433.498 kb on + strand at 4433.758 kb on + strand, within Xcc-8004.4652.1 at 4433.759 kb on - strand, within Xcc-8004.4652.1 at 4433.827 kb on + strand, within Xcc-8004.4652.1 at 4433.827 kb on + strand, within Xcc-8004.4652.1 at 4433.827 kb on + strand, within Xcc-8004.4652.1 at 4433.828 kb on - strand, within Xcc-8004.4652.1 at 4433.828 kb on - strand, within Xcc-8004.4652.1 at 4433.828 kb on - strand, within Xcc-8004.4652.1 at 4433.828 kb on - strand, within Xcc-8004.4652.1 at 4433.977 kb on + strand, within Xcc-8004.4652.1 at 4433.978 kb on - strand, within Xcc-8004.4652.1 at 4434.059 kb on - strand at 4434.145 kb on - strand at 4434.145 kb on - strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.152 kb on + strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.153 kb on - strand at 4434.366 kb on + strand at 4434.366 kb on + strand at 4434.366 kb on + strand at 4434.366 kb on + strand at 4434.366 kb on + strand at 4434.366 kb on + strand at 4434.366 kb on + strand at 4434.367 kb on - strand at 4434.367 kb on - strand at 4434.367 kb on - strand at 4434.367 kb on - strand at 4434.367 kb on - strand at 4434.411 kb on + strand at 4434.480 kb on + strand, within Xcc-8004.4653.1 at 4434.480 kb on + strand, within Xcc-8004.4653.1 at 4434.481 kb on - strand, within Xcc-8004.4653.1 at 4434.481 kb on - strand, within Xcc-8004.4653.1 at 4434.481 kb on - strand, within Xcc-8004.4653.1 at 4434.481 kb on - strand, within Xcc-8004.4653.1 at 4434.481 kb on - strand, within Xcc-8004.4653.1 at 4434.481 kb on - strand, within Xcc-8004.4653.1 at 4434.546 kb on + strand, within Xcc-8004.4653.1 at 4434.546 kb on + strand, within Xcc-8004.4653.1 at 4434.546 kb on + strand, within Xcc-8004.4653.1 at 4434.546 kb on + strand, within Xcc-8004.4653.1 at 4434.547 kb on - strand, within Xcc-8004.4653.1 at 4434.547 kb on - strand, within Xcc-8004.4653.1 at 4434.549 kb on + strand, within Xcc-8004.4653.1 at 4434.549 kb on + strand, within Xcc-8004.4653.1 at 4434.549 kb on + strand, within Xcc-8004.4653.1 at 4434.550 kb on - strand, within Xcc-8004.4653.1 at 4434.550 kb on - strand, within Xcc-8004.4653.1 at 4434.550 kb on - strand, within Xcc-8004.4653.1 at 4434.555 kb on + strand, within Xcc-8004.4653.1 at 4434.555 kb on + strand, within Xcc-8004.4653.1 at 4434.555 kb on + strand, within Xcc-8004.4653.1 at 4434.555 kb on + strand, within Xcc-8004.4653.1 at 4434.556 kb on - strand, within Xcc-8004.4653.1 at 4434.556 kb on - strand, within Xcc-8004.4653.1 at 4434.556 kb on - strand, within Xcc-8004.4653.1 at 4434.618 kb on + strand, within Xcc-8004.4653.1 at 4434.619 kb on - strand, within Xcc-8004.4653.1 at 4434.744 kb on + strand, within Xcc-8004.4653.1 at 4434.745 kb on - strand, within Xcc-8004.4653.1 at 4434.816 kb on + strand, within Xcc-8004.4653.1 at 4434.816 kb on + strand, within Xcc-8004.4653.1 at 4434.816 kb on + strand, within Xcc-8004.4653.1 at 4434.817 kb on - strand, within Xcc-8004.4653.1 at 4434.817 kb on - strand, within Xcc-8004.4653.1 at 4434.817 kb on - strand, within Xcc-8004.4653.1 at 4434.918 kb on + strand, within Xcc-8004.4653.1 at 4434.919 kb on - strand, within Xcc-8004.4653.1 at 4434.919 kb on - strand, within Xcc-8004.4653.1 at 4434.945 kb on + strand, within Xcc-8004.4653.1 at 4434.945 kb on + strand, within Xcc-8004.4653.1 at 4434.946 kb on - strand, within Xcc-8004.4653.1 at 4434.987 kb on + strand, within Xcc-8004.4653.1 at 4434.987 kb on + strand, within Xcc-8004.4653.1 at 4434.987 kb on + strand, within Xcc-8004.4653.1 at 4434.988 kb on - strand, within Xcc-8004.4653.1 at 4434.988 kb on - strand, within Xcc-8004.4653.1 at 4434.988 kb on - strand, within Xcc-8004.4653.1 at 4434.988 kb on - strand, within Xcc-8004.4653.1 at 4435.107 kb on + strand, within Xcc-8004.4653.1 at 4435.107 kb on + strand, within Xcc-8004.4653.1 at 4435.108 kb on - strand, within Xcc-8004.4653.1 at 4435.108 kb on - strand, within Xcc-8004.4653.1 at 4435.108 kb on - strand, within Xcc-8004.4653.1 at 4435.108 kb on - strand, within Xcc-8004.4653.1 at 4435.108 kb on - strand, within Xcc-8004.4653.1 at 4435.128 kb on + strand, within Xcc-8004.4653.1 at 4435.128 kb on + strand, within Xcc-8004.4653.1 at 4435.129 kb on - strand, within Xcc-8004.4653.1 at 4435.129 kb on - strand, within Xcc-8004.4653.1 at 4435.129 kb on - strand, within Xcc-8004.4653.1 at 4435.449 kb on + strand, within Xcc-8004.4653.1 at 4435.449 kb on + strand, within Xcc-8004.4653.1 at 4435.524 kb on + strand, within Xcc-8004.4653.1 at 4435.524 kb on + strand, within Xcc-8004.4653.1 at 4435.525 kb on - strand, within Xcc-8004.4653.1 at 4435.525 kb on - strand, within Xcc-8004.4653.1 at 4435.525 kb on - strand, within Xcc-8004.4653.1 at 4435.563 kb on + strand, within Xcc-8004.4653.1 at 4435.563 kb on + strand, within Xcc-8004.4653.1 at 4435.563 kb on + strand, within Xcc-8004.4653.1 at 4435.563 kb on + strand, within Xcc-8004.4653.1 at 4435.563 kb on + strand, within Xcc-8004.4653.1 at 4435.563 kb on + strand, within Xcc-8004.4653.1 at 4435.563 kb on + strand, within Xcc-8004.4653.1 at 4435.563 kb on + strand, within Xcc-8004.4653.1 at 4435.563 kb on + strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.564 kb on - strand, within Xcc-8004.4653.1 at 4435.659 kb on + strand, within Xcc-8004.4653.1 at 4435.716 kb on + strand, within Xcc-8004.4653.1 at 4435.716 kb on + strand, within Xcc-8004.4653.1 at 4435.717 kb on - strand, within Xcc-8004.4653.1 at 4435.978 kb on - strand at 4435.978 kb on - strand at 4435.994 kb on + strand at 4436.262 kb on + strand, within Xcc-8004.4654.1 at 4436.262 kb on + strand, within Xcc-8004.4654.1 at 4436.262 kb on + strand, within Xcc-8004.4654.1 at 4436.263 kb on - strand, within Xcc-8004.4654.1 at 4436.263 kb on - strand, within Xcc-8004.4654.1 at 4436.271 kb on + strand, within Xcc-8004.4654.1 at 4436.271 kb on + strand, within Xcc-8004.4654.1 at 4436.271 kb on + strand, within Xcc-8004.4654.1 at 4436.271 kb on + strand, within Xcc-8004.4654.1 at 4436.271 kb on + strand, within Xcc-8004.4654.1 at 4436.271 kb on + strand, within Xcc-8004.4654.1 at 4436.271 kb on + strand, within Xcc-8004.4654.1 at 4436.395 kb on + strand, within Xcc-8004.4654.1 at 4436.395 kb on + strand, within Xcc-8004.4654.1 at 4436.395 kb on + strand, within Xcc-8004.4654.1 at 4436.396 kb on - strand, within Xcc-8004.4654.1 at 4436.430 kb on + strand at 4436.430 kb on + strand at 4436.430 kb on + strand at 4436.431 kb on - strand at 4436.431 kb on - strand at 4436.431 kb on - strand at 4436.431 kb on - strand at 4436.483 kb on - strand at 4436.742 kb on + strand, within Xcc-8004.4655.1 at 4436.742 kb on + strand, within Xcc-8004.4655.1 at 4436.742 kb on + strand, within Xcc-8004.4655.1 at 4436.743 kb on - strand, within Xcc-8004.4655.1 at 4436.743 kb on - strand, within Xcc-8004.4655.1 at 4436.763 kb on + strand, within Xcc-8004.4655.1 at 4436.763 kb on + strand, within Xcc-8004.4655.1 at 4436.763 kb on + strand, within Xcc-8004.4655.1 at 4436.763 kb on + strand, within Xcc-8004.4655.1 at 4436.764 kb on - strand, within Xcc-8004.4655.1 at 4436.764 kb on - strand, within Xcc-8004.4655.1 at 4436.764 kb on - strand, within Xcc-8004.4655.1 at 4436.764 kb on - strand, within Xcc-8004.4655.1 at 4436.764 kb on - strand, within Xcc-8004.4655.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 4,433,364 + +1.8 4,433,364 + -0.5 4,433,364 + -1.5 4,433,365 - -1.8 4,433,365 - -0.3 4,433,365 - +0.8 4,433,375 - +1.6 4,433,456 + -0.4 4,433,456 + -0.0 4,433,457 - -1.1 4,433,457 - +1.2 4,433,462 + +4.9 4,433,462 + -2.4 4,433,463 - -0.4 4,433,463 - -0.7 4,433,463 - +2.1 4,433,463 - +2.1 4,433,463 - -2.8 4,433,498 + -0.5 4,433,498 + +0.8 4,433,758 + Xcc-8004.4652.1 0.47 +0.8 4,433,759 - Xcc-8004.4652.1 0.47 -0.3 4,433,827 + Xcc-8004.4652.1 0.57 -0.6 4,433,827 + Xcc-8004.4652.1 0.57 +1.5 4,433,827 + Xcc-8004.4652.1 0.57 -0.9 4,433,828 - Xcc-8004.4652.1 0.57 +0.6 4,433,828 - Xcc-8004.4652.1 0.57 -0.3 4,433,828 - Xcc-8004.4652.1 0.57 -0.2 4,433,828 - Xcc-8004.4652.1 0.57 +1.3 4,433,977 + Xcc-8004.4652.1 0.79 +0.5 4,433,978 - Xcc-8004.4652.1 0.79 +3.0 4,434,059 - +2.8 4,434,145 - -1.2 4,434,145 - +0.8 4,434,152 + +2.1 4,434,152 + -0.9 4,434,152 + -0.4 4,434,152 + -0.1 4,434,152 + +0.5 4,434,152 + -1.2 4,434,152 + -2.1 4,434,152 + +1.1 4,434,152 + +3.4 4,434,152 + -1.2 4,434,152 + +2.4 4,434,153 - +0.1 4,434,153 - +0.8 4,434,153 - +2.1 4,434,153 - -0.2 4,434,153 - +0.8 4,434,153 - +3.0 4,434,153 - -0.2 4,434,366 + +0.1 4,434,366 + +0.8 4,434,366 + -2.5 4,434,366 + -0.5 4,434,366 + -0.7 4,434,366 + -0.8 4,434,366 + -1.7 4,434,367 - +0.8 4,434,367 - -1.1 4,434,367 - +0.1 4,434,367 - +0.2 4,434,367 - +1.4 4,434,411 + -2.0 4,434,480 + Xcc-8004.4653.1 0.11 -1.1 4,434,480 + Xcc-8004.4653.1 0.11 -1.9 4,434,481 - Xcc-8004.4653.1 0.11 -1.6 4,434,481 - Xcc-8004.4653.1 0.11 -1.2 4,434,481 - Xcc-8004.4653.1 0.11 -3.4 4,434,481 - Xcc-8004.4653.1 0.11 +0.2 4,434,481 - Xcc-8004.4653.1 0.11 +0.8 4,434,481 - Xcc-8004.4653.1 0.11 -2.7 4,434,546 + Xcc-8004.4653.1 0.15 -1.7 4,434,546 + Xcc-8004.4653.1 0.15 -1.5 4,434,546 + Xcc-8004.4653.1 0.15 -1.0 4,434,546 + Xcc-8004.4653.1 0.15 -3.1 4,434,547 - Xcc-8004.4653.1 0.15 -1.5 4,434,547 - Xcc-8004.4653.1 0.15 -4.7 4,434,549 + Xcc-8004.4653.1 0.15 -1.8 4,434,549 + Xcc-8004.4653.1 0.15 -1.2 4,434,549 + Xcc-8004.4653.1 0.15 -1.8 4,434,550 - Xcc-8004.4653.1 0.16 +0.8 4,434,550 - Xcc-8004.4653.1 0.16 -1.8 4,434,550 - Xcc-8004.4653.1 0.16 -1.5 4,434,555 + Xcc-8004.4653.1 0.16 -1.0 4,434,555 + Xcc-8004.4653.1 0.16 -1.2 4,434,555 + Xcc-8004.4653.1 0.16 -0.1 4,434,555 + Xcc-8004.4653.1 0.16 +1.8 4,434,556 - Xcc-8004.4653.1 0.16 -1.1 4,434,556 - Xcc-8004.4653.1 0.16 -0.2 4,434,556 - Xcc-8004.4653.1 0.16 -1.9 4,434,618 + Xcc-8004.4653.1 0.20 -2.0 4,434,619 - Xcc-8004.4653.1 0.20 +1.3 4,434,744 + Xcc-8004.4653.1 0.28 +1.8 4,434,745 - Xcc-8004.4653.1 0.28 -0.2 4,434,816 + Xcc-8004.4653.1 0.32 -0.8 4,434,816 + Xcc-8004.4653.1 0.32 -1.6 4,434,816 + Xcc-8004.4653.1 0.32 -0.2 4,434,817 - Xcc-8004.4653.1 0.32 -3.4 4,434,817 - Xcc-8004.4653.1 0.32 -1.0 4,434,817 - Xcc-8004.4653.1 0.32 -2.5 4,434,918 + Xcc-8004.4653.1 0.39 -2.0 4,434,919 - Xcc-8004.4653.1 0.39 -2.2 4,434,919 - Xcc-8004.4653.1 0.39 -1.9 4,434,945 + Xcc-8004.4653.1 0.40 -0.2 4,434,945 + Xcc-8004.4653.1 0.40 -2.7 4,434,946 - Xcc-8004.4653.1 0.40 -0.8 4,434,987 + Xcc-8004.4653.1 0.43 +1.8 4,434,987 + Xcc-8004.4653.1 0.43 -2.5 4,434,987 + Xcc-8004.4653.1 0.43 +0.4 4,434,988 - Xcc-8004.4653.1 0.43 +0.8 4,434,988 - Xcc-8004.4653.1 0.43 -1.1 4,434,988 - Xcc-8004.4653.1 0.43 -2.2 4,434,988 - Xcc-8004.4653.1 0.43 +1.8 4,435,107 + Xcc-8004.4653.1 0.50 -0.2 4,435,107 + Xcc-8004.4653.1 0.50 -0.2 4,435,108 - Xcc-8004.4653.1 0.51 -1.7 4,435,108 - Xcc-8004.4653.1 0.51 -2.2 4,435,108 - Xcc-8004.4653.1 0.51 -1.5 4,435,108 - Xcc-8004.4653.1 0.51 -1.2 4,435,108 - Xcc-8004.4653.1 0.51 +0.8 4,435,128 + Xcc-8004.4653.1 0.52 -3.3 4,435,128 + Xcc-8004.4653.1 0.52 +0.5 4,435,129 - Xcc-8004.4653.1 0.52 -1.5 4,435,129 - Xcc-8004.4653.1 0.52 +0.8 4,435,129 - Xcc-8004.4653.1 0.52 -2.6 4,435,449 + Xcc-8004.4653.1 0.72 -2.1 4,435,449 + Xcc-8004.4653.1 0.72 -0.5 4,435,524 + Xcc-8004.4653.1 0.77 -1.2 4,435,524 + Xcc-8004.4653.1 0.77 +0.3 4,435,525 - Xcc-8004.4653.1 0.77 -1.4 4,435,525 - Xcc-8004.4653.1 0.77 -2.4 4,435,525 - Xcc-8004.4653.1 0.77 -0.9 4,435,563 + Xcc-8004.4653.1 0.79 +0.5 4,435,563 + Xcc-8004.4653.1 0.79 -1.8 4,435,563 + Xcc-8004.4653.1 0.79 -1.2 4,435,563 + Xcc-8004.4653.1 0.79 -1.2 4,435,563 + Xcc-8004.4653.1 0.79 +0.1 4,435,563 + Xcc-8004.4653.1 0.79 -2.5 4,435,563 + Xcc-8004.4653.1 0.79 -2.7 4,435,563 + Xcc-8004.4653.1 0.79 -1.4 4,435,563 + Xcc-8004.4653.1 0.79 -3.3 4,435,564 - Xcc-8004.4653.1 0.79 -0.3 4,435,564 - Xcc-8004.4653.1 0.79 -0.8 4,435,564 - Xcc-8004.4653.1 0.79 -2.2 4,435,564 - Xcc-8004.4653.1 0.79 -2.0 4,435,564 - Xcc-8004.4653.1 0.79 -0.2 4,435,564 - Xcc-8004.4653.1 0.79 -1.0 4,435,564 - Xcc-8004.4653.1 0.79 -1.2 4,435,564 - Xcc-8004.4653.1 0.79 -0.3 4,435,564 - Xcc-8004.4653.1 0.79 +0.7 4,435,564 - Xcc-8004.4653.1 0.79 +3.0 4,435,564 - Xcc-8004.4653.1 0.79 -2.0 4,435,659 + Xcc-8004.4653.1 0.85 +0.2 4,435,716 + Xcc-8004.4653.1 0.89 -0.4 4,435,716 + Xcc-8004.4653.1 0.89 -1.0 4,435,717 - Xcc-8004.4653.1 0.89 -2.1 4,435,978 - +2.6 4,435,978 - -1.9 4,435,994 + -1.5 4,436,262 + Xcc-8004.4654.1 0.47 +0.7 4,436,262 + Xcc-8004.4654.1 0.47 +1.9 4,436,262 + Xcc-8004.4654.1 0.47 +0.6 4,436,263 - Xcc-8004.4654.1 0.48 +1.5 4,436,263 - Xcc-8004.4654.1 0.48 +2.3 4,436,271 + Xcc-8004.4654.1 0.50 -1.3 4,436,271 + Xcc-8004.4654.1 0.50 +0.8 4,436,271 + Xcc-8004.4654.1 0.50 +0.6 4,436,271 + Xcc-8004.4654.1 0.50 +1.8 4,436,271 + Xcc-8004.4654.1 0.50 +0.1 4,436,271 + Xcc-8004.4654.1 0.50 +1.5 4,436,271 + Xcc-8004.4654.1 0.50 +1.3 4,436,395 + Xcc-8004.4654.1 0.83 +1.1 4,436,395 + Xcc-8004.4654.1 0.83 +2.0 4,436,395 + Xcc-8004.4654.1 0.83 +1.1 4,436,396 - Xcc-8004.4654.1 0.84 +0.9 4,436,430 + -2.4 4,436,430 + -1.2 4,436,430 + -0.1 4,436,431 - +0.7 4,436,431 - +0.8 4,436,431 - +0.8 4,436,431 - -0.2 4,436,483 - +0.3 4,436,742 + Xcc-8004.4655.1 0.30 -3.4 4,436,742 + Xcc-8004.4655.1 0.30 -0.2 4,436,742 + Xcc-8004.4655.1 0.30 -1.4 4,436,743 - Xcc-8004.4655.1 0.30 -0.4 4,436,743 - Xcc-8004.4655.1 0.30 -1.1 4,436,763 + Xcc-8004.4655.1 0.33 -1.8 4,436,763 + Xcc-8004.4655.1 0.33 +0.2 4,436,763 + Xcc-8004.4655.1 0.33 -1.0 4,436,763 + Xcc-8004.4655.1 0.33 -0.2 4,436,764 - Xcc-8004.4655.1 0.33 +0.2 4,436,764 - Xcc-8004.4655.1 0.33 -0.6 4,436,764 - Xcc-8004.4655.1 0.33 -1.7 4,436,764 - Xcc-8004.4655.1 0.33 +1.5 4,436,764 - Xcc-8004.4655.1 0.33 +1.1
Or see this region's nucleotide sequence