Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.461.1 and Xcc-8004.462.1 are separated by 122 nucleotides Xcc-8004.462.1 and Xcc-8004.463.1 are separated by 32 nucleotides Xcc-8004.463.1 and Xcc-8004.464.1 are separated by 36 nucleotides
Xcc-8004.461.1: Xcc-8004.461.1 - Transcriptional regulator, MarR family, at 423,461 to 424,342
Xcc-8004.461.1
Xcc-8004.462.1: Xcc-8004.462.1 - hypothetical protein, at 424,465 to 424,875
Xcc-8004.462.1
Xcc-8004.463.1: Xcc-8004.463.1 - 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-), at 424,908 to 425,675
Xcc-8004.463.1
Xcc-8004.464.1: Xcc-8004.464.1 - Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28), at 425,712 to 427,193
Xcc-8004.464.1
Position (kb) 424
425
426 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 424.340 kb on + strand at 424.380 kb on + strand at 424.381 kb on - strand at 424.381 kb on - strand at 424.389 kb on + strand at 424.390 kb on - strand at 424.474 kb on + strand at 424.474 kb on + strand at 424.475 kb on - strand at 424.528 kb on + strand, within Xcc-8004.462.1 at 424.528 kb on + strand, within Xcc-8004.462.1 at 424.528 kb on + strand, within Xcc-8004.462.1 at 424.529 kb on - strand, within Xcc-8004.462.1 at 424.529 kb on - strand, within Xcc-8004.462.1 at 424.529 kb on - strand, within Xcc-8004.462.1 at 424.673 kb on - strand, within Xcc-8004.462.1 at 424.722 kb on + strand, within Xcc-8004.462.1 at 424.874 kb on - strand at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.030 kb on + strand, within Xcc-8004.463.1 at 425.182 kb on - strand, within Xcc-8004.463.1 at 425.377 kb on - strand, within Xcc-8004.463.1 at 425.673 kb on + strand at 425.674 kb on - strand at 425.674 kb on - strand at 425.674 kb on - strand at 425.771 kb on + strand at 425.772 kb on - strand at 426.072 kb on + strand, within Xcc-8004.464.1 at 426.072 kb on + strand, within Xcc-8004.464.1 at 426.073 kb on - strand, within Xcc-8004.464.1 at 426.073 kb on - strand, within Xcc-8004.464.1 at 426.073 kb on - strand, within Xcc-8004.464.1 at 426.075 kb on + strand, within Xcc-8004.464.1 at 426.075 kb on + strand, within Xcc-8004.464.1 at 426.075 kb on + strand, within Xcc-8004.464.1 at 426.075 kb on + strand, within Xcc-8004.464.1 at 426.076 kb on - strand, within Xcc-8004.464.1 at 426.285 kb on + strand, within Xcc-8004.464.1 at 426.286 kb on - strand, within Xcc-8004.464.1 at 426.286 kb on - strand, within Xcc-8004.464.1 at 426.288 kb on - strand, within Xcc-8004.464.1 at 426.331 kb on + strand, within Xcc-8004.464.1 at 426.503 kb on + strand, within Xcc-8004.464.1 at 426.503 kb on + strand, within Xcc-8004.464.1 at 426.503 kb on + strand, within Xcc-8004.464.1 at 426.570 kb on + strand, within Xcc-8004.464.1 at 426.571 kb on - strand, within Xcc-8004.464.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 424,340 + +0.7 424,380 + +1.7 424,381 - +4.4 424,381 - +0.5 424,389 + +1.3 424,390 - +0.5 424,474 + +0.3 424,474 + +1.3 424,475 - +0.5 424,528 + Xcc-8004.462.1 0.15 +0.3 424,528 + Xcc-8004.462.1 0.15 -0.5 424,528 + Xcc-8004.462.1 0.15 -0.0 424,529 - Xcc-8004.462.1 0.16 +0.5 424,529 - Xcc-8004.462.1 0.16 +1.2 424,529 - Xcc-8004.462.1 0.16 +0.0 424,673 - Xcc-8004.462.1 0.51 +0.3 424,722 + Xcc-8004.462.1 0.63 +1.5 424,874 - -0.4 425,030 + Xcc-8004.463.1 0.16 -0.1 425,030 + Xcc-8004.463.1 0.16 -0.3 425,030 + Xcc-8004.463.1 0.16 -2.1 425,182 - Xcc-8004.463.1 0.36 +0.3 425,377 - Xcc-8004.463.1 0.61 -2.2 425,673 + -2.0 425,674 - +1.7 425,674 - -0.6 425,674 - -2.1 425,771 + -0.6 425,772 - -0.1 426,072 + Xcc-8004.464.1 0.24 -0.5 426,072 + Xcc-8004.464.1 0.24 -0.5 426,073 - Xcc-8004.464.1 0.24 -0.5 426,073 - Xcc-8004.464.1 0.24 +1.7 426,073 - Xcc-8004.464.1 0.24 -0.3 426,075 + Xcc-8004.464.1 0.24 +1.3 426,075 + Xcc-8004.464.1 0.24 +0.1 426,075 + Xcc-8004.464.1 0.24 -1.4 426,075 + Xcc-8004.464.1 0.24 +1.7 426,076 - Xcc-8004.464.1 0.25 +0.1 426,285 + Xcc-8004.464.1 0.39 +1.7 426,286 - Xcc-8004.464.1 0.39 -0.2 426,286 - Xcc-8004.464.1 0.39 +0.3 426,288 - Xcc-8004.464.1 0.39 -1.9 426,331 + Xcc-8004.464.1 0.42 -0.7 426,503 + Xcc-8004.464.1 0.53 -1.5 426,503 + Xcc-8004.464.1 0.53 -0.7 426,503 + Xcc-8004.464.1 0.53 -0.7 426,570 + Xcc-8004.464.1 0.58 +1.4 426,571 - Xcc-8004.464.1 0.58 +1.5
Or see this region's nucleotide sequence