Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4514.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4510.1 and Xcc-8004.4513.1 overlap by 4 nucleotidesXcc-8004.4513.1 and Xcc-8004.4514.1 overlap by 4 nucleotidesXcc-8004.4514.1 and Xcc-8004.4517.1 overlap by 4 nucleotides Xcc-8004.4510.1: Xcc-8004.4510.1 - ATP binding component of ABC-transporter, at 4,313,709 to 4,314,995 Xcc-8004.4510.1 Xcc-8004.4513.1: Xcc-8004.4513.1 - O-antigen export system permease protein RfbD, at 4,314,992 to 4,315,864 Xcc-8004.4513.1 Xcc-8004.4514.1: Xcc-8004.4514.1 - Glycosyltransferase, at 4,315,861 to 4,317,246 Xcc-8004.4514.1 Xcc-8004.4517.1: Xcc-8004.4517.1 - Cystathionine gamma-lyase (EC 4.4.1.1), at 4,317,243 to 4,318,442 Xcc-8004.4517.1 Position (kb) 4315 4316 4317 4318Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.996 kb on - strandat 4315.790 kb on + strandat 4315.791 kb on - strandat 4315.808 kb on + strandat 4315.808 kb on + strandat 4315.808 kb on + strandat 4315.808 kb on + strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4316.061 kb on - strand, within Xcc-8004.4514.1at 4316.061 kb on - strand, within Xcc-8004.4514.1at 4316.107 kb on - strand, within Xcc-8004.4514.1at 4316.127 kb on + strand, within Xcc-8004.4514.1at 4316.222 kb on + strand, within Xcc-8004.4514.1at 4316.222 kb on + strand, within Xcc-8004.4514.1at 4316.222 kb on + strand, within Xcc-8004.4514.1at 4316.222 kb on + strand, within Xcc-8004.4514.1at 4316.222 kb on + strand, within Xcc-8004.4514.1at 4316.223 kb on - strand, within Xcc-8004.4514.1at 4316.223 kb on - strand, within Xcc-8004.4514.1at 4316.223 kb on - strand, within Xcc-8004.4514.1at 4316.223 kb on - strand, within Xcc-8004.4514.1at 4316.339 kb on + strand, within Xcc-8004.4514.1at 4316.339 kb on + strand, within Xcc-8004.4514.1at 4316.339 kb on + strand, within Xcc-8004.4514.1at 4316.416 kb on + strand, within Xcc-8004.4514.1at 4316.416 kb on + strand, within Xcc-8004.4514.1at 4316.417 kb on - strand, within Xcc-8004.4514.1at 4316.569 kb on - strand, within Xcc-8004.4514.1at 4316.626 kb on + strand, within Xcc-8004.4514.1at 4316.626 kb on + strand, within Xcc-8004.4514.1at 4316.652 kb on + strand, within Xcc-8004.4514.1at 4316.653 kb on - strand, within Xcc-8004.4514.1at 4316.653 kb on - strand, within Xcc-8004.4514.1at 4316.653 kb on - strand, within Xcc-8004.4514.1at 4316.662 kb on + strand, within Xcc-8004.4514.1at 4316.662 kb on + strand, within Xcc-8004.4514.1at 4316.663 kb on - strand, within Xcc-8004.4514.1at 4316.663 kb on - strand, within Xcc-8004.4514.1at 4316.696 kb on + strand, within Xcc-8004.4514.1at 4316.696 kb on + strand, within Xcc-8004.4514.1at 4316.696 kb on + strand, within Xcc-8004.4514.1at 4316.696 kb on + strand, within Xcc-8004.4514.1at 4316.697 kb on - strand, within Xcc-8004.4514.1at 4316.747 kb on + strand, within Xcc-8004.4514.1at 4316.747 kb on + strand, within Xcc-8004.4514.1at 4316.748 kb on - strand, within Xcc-8004.4514.1at 4316.811 kb on + strand, within Xcc-8004.4514.1at 4316.811 kb on + strand, within Xcc-8004.4514.1at 4316.811 kb on + strand, within Xcc-8004.4514.1at 4316.812 kb on - strand, within Xcc-8004.4514.1at 4316.845 kb on - strand, within Xcc-8004.4514.1at 4316.845 kb on - strand, within Xcc-8004.4514.1at 4316.855 kb on + strand, within Xcc-8004.4514.1at 4316.855 kb on + strand, within Xcc-8004.4514.1at 4316.855 kb on + strand, within Xcc-8004.4514.1at 4316.855 kb on + strand, within Xcc-8004.4514.1at 4316.855 kb on + strand, within Xcc-8004.4514.1at 4316.856 kb on - strand, within Xcc-8004.4514.1at 4316.856 kb on - strand, within Xcc-8004.4514.1at 4316.856 kb on - strand, within Xcc-8004.4514.1at 4316.856 kb on - strand, within Xcc-8004.4514.1at 4316.897 kb on + strand, within Xcc-8004.4514.1at 4316.897 kb on + strand, within Xcc-8004.4514.1at 4316.897 kb on + strand, within Xcc-8004.4514.1at 4316.897 kb on + strand, within Xcc-8004.4514.1at 4316.898 kb on - strand, within Xcc-8004.4514.1at 4316.898 kb on - strand, within Xcc-8004.4514.1at 4316.898 kb on - strand, within Xcc-8004.4514.1at 4316.898 kb on - strand, within Xcc-8004.4514.1at 4316.898 kb on - strand, within Xcc-8004.4514.1at 4316.898 kb on - strand, within Xcc-8004.4514.1at 4316.939 kb on + strand, within Xcc-8004.4514.1at 4316.939 kb on + strand, within Xcc-8004.4514.1at 4316.939 kb on + strand, within Xcc-8004.4514.1at 4316.940 kb on - strand, within Xcc-8004.4514.1at 4316.940 kb on - strand, within Xcc-8004.4514.1at 4316.940 kb on - strand, within Xcc-8004.4514.1at 4316.949 kb on + strand, within Xcc-8004.4514.1at 4316.949 kb on + strand, within Xcc-8004.4514.1at 4316.950 kb on - strand, within Xcc-8004.4514.1at 4316.950 kb on - strand, within Xcc-8004.4514.1at 4316.950 kb on - strand, within Xcc-8004.4514.1at 4316.950 kb on - strand, within Xcc-8004.4514.1at 4316.970 kb on + strand, within Xcc-8004.4514.1at 4317.054 kb on + strand, within Xcc-8004.4514.1at 4317.054 kb on + strand, within Xcc-8004.4514.1at 4317.054 kb on + strand, within Xcc-8004.4514.1at 4317.054 kb on + strand, within Xcc-8004.4514.1at 4317.103 kb on + strand, within Xcc-8004.4514.1at 4317.103 kb on + strand, within Xcc-8004.4514.1at 4317.104 kb on - strand, within Xcc-8004.4514.1at 4317.345 kb on + strandat 4317.345 kb on + strandat 4317.345 kb on + strandat 4317.345 kb on + strandat 4317.345 kb on + strandat 4317.346 kb on - strandat 4317.346 kb on - strandat 4317.346 kb on - strandat 4317.346 kb on - strandat 4317.346 kb on - strandat 4317.346 kb on - strandat 4317.574 kb on + strand, within Xcc-8004.4517.1at 4317.574 kb on + strand, within Xcc-8004.4517.1at 4317.574 kb on + strand, within Xcc-8004.4517.1at 4317.574 kb on + strand, within Xcc-8004.4517.1at 4317.708 kb on + strand, within Xcc-8004.4517.1at 4317.708 kb on + strand, within Xcc-8004.4517.1at 4317.708 kb on + strand, within Xcc-8004.4517.1at 4317.708 kb on + strand, within Xcc-8004.4517.1at 4317.708 kb on + strand, within Xcc-8004.4517.1at 4317.708 kb on + strand, within Xcc-8004.4517.1at 4317.709 kb on - strand, within Xcc-8004.4517.1at 4317.811 kb on + strand, within Xcc-8004.4517.1at 4317.811 kb on + strand, within Xcc-8004.4517.1at 4317.811 kb on + strand, within Xcc-8004.4517.1at 4317.811 kb on + strand, within Xcc-8004.4517.1at 4317.811 kb on + strand, within Xcc-8004.4517.1at 4317.915 kb on - strand, within Xcc-8004.4517.1at 4318.108 kb on + strand, within Xcc-8004.4517.1at 4318.125 kb on + strand, within Xcc-8004.4517.1at 4318.237 kb on + strand, within Xcc-8004.4517.1at 4318.237 kb on + strand, within Xcc-8004.4517.1at 4318.238 kb on - strand, within Xcc-8004.4517.1at 4318.238 kb on - strand, within Xcc-8004.4517.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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4,314,987 - +0.6
4,314,987 - +0.5
4,314,987 - -1.5
4,314,987 - -0.2
4,314,987 - -0.5
4,314,996 - +0.8
4,315,790 + -1.2
4,315,791 - -0.2
4,315,808 + -1.8
4,315,808 + +0.4
4,315,808 + -1.0
4,315,808 + -3.2
4,315,809 - +0.4
4,315,809 - -0.6
4,315,809 - +0.4
4,315,809 - -0.2
4,315,809 - +0.8
4,316,061 - Xcc-8004.4514.1 0.14 -1.7
4,316,061 - Xcc-8004.4514.1 0.14 -0.7
4,316,107 - Xcc-8004.4514.1 0.18 -2.2
4,316,127 + Xcc-8004.4514.1 0.19 +1.8
4,316,222 + Xcc-8004.4514.1 0.26 -1.5
4,316,222 + Xcc-8004.4514.1 0.26 -1.5
4,316,222 + Xcc-8004.4514.1 0.26 -1.6
4,316,222 + Xcc-8004.4514.1 0.26 -1.5
4,316,222 + Xcc-8004.4514.1 0.26 -2.9
4,316,223 - Xcc-8004.4514.1 0.26 -2.2
4,316,223 - Xcc-8004.4514.1 0.26 -1.7
4,316,223 - Xcc-8004.4514.1 0.26 -1.2
4,316,223 - Xcc-8004.4514.1 0.26 -1.2
4,316,339 + Xcc-8004.4514.1 0.34 -1.0
4,316,339 + Xcc-8004.4514.1 0.34 -1.5
4,316,339 + Xcc-8004.4514.1 0.34 -2.6
4,316,416 + Xcc-8004.4514.1 0.40 -3.4
4,316,416 + Xcc-8004.4514.1 0.40 -2.7
4,316,417 - Xcc-8004.4514.1 0.40 -2.9
4,316,569 - Xcc-8004.4514.1 0.51 +1.8
4,316,626 + Xcc-8004.4514.1 0.55 -1.2
4,316,626 + Xcc-8004.4514.1 0.55 -1.3
4,316,652 + Xcc-8004.4514.1 0.57 -1.3
4,316,653 - Xcc-8004.4514.1 0.57 -0.7
4,316,653 - Xcc-8004.4514.1 0.57 -3.0
4,316,653 - Xcc-8004.4514.1 0.57 -2.3
4,316,662 + Xcc-8004.4514.1 0.58 -2.9
4,316,662 + Xcc-8004.4514.1 0.58 -0.6
4,316,663 - Xcc-8004.4514.1 0.58 -1.7
4,316,663 - Xcc-8004.4514.1 0.58 -1.2
4,316,696 + Xcc-8004.4514.1 0.60 -0.2
4,316,696 + Xcc-8004.4514.1 0.60 -2.0
4,316,696 + Xcc-8004.4514.1 0.60 -1.8
4,316,696 + Xcc-8004.4514.1 0.60 -0.7
4,316,697 - Xcc-8004.4514.1 0.60 -0.6
4,316,747 + Xcc-8004.4514.1 0.64 -2.3
4,316,747 + Xcc-8004.4514.1 0.64 -2.1
4,316,748 - Xcc-8004.4514.1 0.64 -1.4
4,316,811 + Xcc-8004.4514.1 0.69 -1.7
4,316,811 + Xcc-8004.4514.1 0.69 -2.2
4,316,811 + Xcc-8004.4514.1 0.69 -2.1
4,316,812 - Xcc-8004.4514.1 0.69 -0.7
4,316,845 - Xcc-8004.4514.1 0.71 -2.9
4,316,845 - Xcc-8004.4514.1 0.71 -3.4
4,316,855 + Xcc-8004.4514.1 0.72 -3.6
4,316,855 + Xcc-8004.4514.1 0.72 -0.5
4,316,855 + Xcc-8004.4514.1 0.72 -2.0
4,316,855 + Xcc-8004.4514.1 0.72 -1.2
4,316,855 + Xcc-8004.4514.1 0.72 -0.9
4,316,856 - Xcc-8004.4514.1 0.72 -0.4
4,316,856 - Xcc-8004.4514.1 0.72 +0.3
4,316,856 - Xcc-8004.4514.1 0.72 -0.2
4,316,856 - Xcc-8004.4514.1 0.72 -3.7
4,316,897 + Xcc-8004.4514.1 0.75 -1.9
4,316,897 + Xcc-8004.4514.1 0.75 -2.2
4,316,897 + Xcc-8004.4514.1 0.75 -3.4
4,316,897 + Xcc-8004.4514.1 0.75 -0.4
4,316,898 - Xcc-8004.4514.1 0.75 -3.7
4,316,898 - Xcc-8004.4514.1 0.75 -2.5
4,316,898 - Xcc-8004.4514.1 0.75 -1.2
4,316,898 - Xcc-8004.4514.1 0.75 -2.5
4,316,898 - Xcc-8004.4514.1 0.75 +0.8
4,316,898 - Xcc-8004.4514.1 0.75 -3.1
4,316,939 + Xcc-8004.4514.1 0.78 -1.6
4,316,939 + Xcc-8004.4514.1 0.78 -2.8
4,316,939 + Xcc-8004.4514.1 0.78 +0.8
4,316,940 - Xcc-8004.4514.1 0.78 -3.6
4,316,940 - Xcc-8004.4514.1 0.78 -1.7
4,316,940 - Xcc-8004.4514.1 0.78 -2.8
4,316,949 + Xcc-8004.4514.1 0.78 -1.7
4,316,949 + Xcc-8004.4514.1 0.78 -2.5
4,316,950 - Xcc-8004.4514.1 0.79 -1.0
4,316,950 - Xcc-8004.4514.1 0.79 -2.2
4,316,950 - Xcc-8004.4514.1 0.79 -2.5
4,316,950 - Xcc-8004.4514.1 0.79 +0.4
4,316,970 + Xcc-8004.4514.1 0.80 -3.2
4,317,054 + Xcc-8004.4514.1 0.86 -1.3
4,317,054 + Xcc-8004.4514.1 0.86 -1.6
4,317,054 + Xcc-8004.4514.1 0.86 -2.3
4,317,054 + Xcc-8004.4514.1 0.86 -0.8
4,317,103 + Xcc-8004.4514.1 0.90 -0.6
4,317,103 + Xcc-8004.4514.1 0.90 -2.2
4,317,104 - Xcc-8004.4514.1 0.90 -3.1
4,317,345 + -1.7
4,317,345 + -2.1
4,317,345 + -1.6
4,317,345 + -1.0
4,317,345 + -1.1
4,317,346 - -0.0
4,317,346 - -1.3
4,317,346 - -0.4
4,317,346 - +0.1
4,317,346 - +1.1
4,317,346 - +0.4
4,317,574 + Xcc-8004.4517.1 0.28 -1.8
4,317,574 + Xcc-8004.4517.1 0.28 +0.8
4,317,574 + Xcc-8004.4517.1 0.28 -0.7
4,317,574 + Xcc-8004.4517.1 0.28 -0.4
4,317,708 + Xcc-8004.4517.1 0.39 -0.0
4,317,708 + Xcc-8004.4517.1 0.39 -0.7
4,317,708 + Xcc-8004.4517.1 0.39 -0.7
4,317,708 + Xcc-8004.4517.1 0.39 +0.4
4,317,708 + Xcc-8004.4517.1 0.39 -1.1
4,317,708 + Xcc-8004.4517.1 0.39 -0.3
4,317,709 - Xcc-8004.4517.1 0.39 -0.2
4,317,811 + Xcc-8004.4517.1 0.47 +0.8
4,317,811 + Xcc-8004.4517.1 0.47 -1.4
4,317,811 + Xcc-8004.4517.1 0.47 -0.7
4,317,811 + Xcc-8004.4517.1 0.47 -3.9
4,317,811 + Xcc-8004.4517.1 0.47 -2.7
4,317,915 - Xcc-8004.4517.1 0.56 -1.2
4,318,108 + Xcc-8004.4517.1 0.72 -1.3
4,318,125 + Xcc-8004.4517.1 0.73 -1.2
4,318,237 + Xcc-8004.4517.1 0.83 +0.2
4,318,237 + Xcc-8004.4517.1 0.83 -2.7
4,318,238 - Xcc-8004.4517.1 0.83 +0.0
4,318,238 - Xcc-8004.4517.1 0.83 +0.6

Or see this region's nucleotide sequence