Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4507.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4506.1 and Xcc-8004.4507.1 overlap by 4 nucleotidesXcc-8004.4507.1 and Xcc-8004.4508.1 are separated by 34 nucleotides Xcc-8004.4506.1: Xcc-8004.4506.1 - membrane protein WxcD, at 4,308,497 to 4,310,263 Xcc-8004.4506.1 Xcc-8004.4507.1: Xcc-8004.4507.1 - Glycosyltransferase, at 4,310,260 to 4,311,339 Xcc-8004.4507.1 Xcc-8004.4508.1: Xcc-8004.4508.1 - Kinase, at 4,311,374 to 4,313,668 Xcc-8004.4508.1 Position (kb) 4310 4311 4312Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4309.320 kb on + strand, within Xcc-8004.4506.1at 4309.321 kb on - strand, within Xcc-8004.4506.1at 4309.441 kb on + strand, within Xcc-8004.4506.1at 4309.442 kb on - strand, within Xcc-8004.4506.1at 4309.551 kb on - strand, within Xcc-8004.4506.1at 4309.596 kb on - strand, within Xcc-8004.4506.1at 4309.596 kb on - strand, within Xcc-8004.4506.1at 4309.657 kb on + strand, within Xcc-8004.4506.1at 4309.658 kb on - strand, within Xcc-8004.4506.1at 4309.699 kb on - strand, within Xcc-8004.4506.1at 4309.699 kb on - strand, within Xcc-8004.4506.1at 4309.717 kb on + strand, within Xcc-8004.4506.1at 4309.970 kb on - strand, within Xcc-8004.4506.1at 4309.970 kb on - strand, within Xcc-8004.4506.1at 4309.970 kb on - strand, within Xcc-8004.4506.1at 4309.982 kb on + strand, within Xcc-8004.4506.1at 4309.982 kb on + strand, within Xcc-8004.4506.1at 4309.982 kb on + strand, within Xcc-8004.4506.1at 4309.982 kb on + strand, within Xcc-8004.4506.1at 4309.983 kb on - strand, within Xcc-8004.4506.1at 4310.020 kb on + strand, within Xcc-8004.4506.1at 4310.021 kb on - strand, within Xcc-8004.4506.1at 4310.068 kb on - strand, within Xcc-8004.4506.1at 4310.157 kb on - strandat 4310.313 kb on + strandat 4310.314 kb on - strandat 4310.638 kb on + strand, within Xcc-8004.4507.1at 4310.698 kb on - strand, within Xcc-8004.4507.1at 4310.755 kb on + strand, within Xcc-8004.4507.1at 4310.756 kb on - strand, within Xcc-8004.4507.1at 4310.756 kb on - strand, within Xcc-8004.4507.1at 4310.778 kb on - strand, within Xcc-8004.4507.1at 4310.778 kb on - strand, within Xcc-8004.4507.1at 4310.786 kb on + strand, within Xcc-8004.4507.1at 4310.799 kb on + strand, within Xcc-8004.4507.1at 4310.829 kb on - strand, within Xcc-8004.4507.1at 4310.830 kb on + strand, within Xcc-8004.4507.1at 4310.830 kb on + strand, within Xcc-8004.4507.1at 4311.008 kb on + strand, within Xcc-8004.4507.1at 4311.009 kb on - strand, within Xcc-8004.4507.1at 4311.009 kb on - strand, within Xcc-8004.4507.1at 4311.065 kb on + strand, within Xcc-8004.4507.1at 4311.065 kb on + strand, within Xcc-8004.4507.1at 4311.066 kb on - strand, within Xcc-8004.4507.1at 4311.066 kb on - strand, within Xcc-8004.4507.1at 4311.066 kb on - strand, within Xcc-8004.4507.1at 4311.092 kb on - strand, within Xcc-8004.4507.1at 4311.092 kb on - strand, within Xcc-8004.4507.1at 4311.348 kb on + strandat 4311.349 kb on - strandat 4311.349 kb on - strandat 4311.366 kb on + strandat 4311.388 kb on + strandat 4311.422 kb on + strandat 4311.455 kb on - strandat 4311.455 kb on - strandat 4311.455 kb on - strandat 4311.455 kb on - strandat 4311.455 kb on - strandat 4311.455 kb on - strandat 4311.546 kb on - strandat 4311.657 kb on + strand, within Xcc-8004.4508.1at 4311.658 kb on - strand, within Xcc-8004.4508.1at 4311.658 kb on - strand, within Xcc-8004.4508.1at 4311.689 kb on - strand, within Xcc-8004.4508.1at 4311.721 kb on + strand, within Xcc-8004.4508.1at 4311.721 kb on + strand, within Xcc-8004.4508.1at 4311.721 kb on + strand, within Xcc-8004.4508.1at 4311.722 kb on - strand, within Xcc-8004.4508.1at 4311.800 kb on - strand, within Xcc-8004.4508.1at 4312.105 kb on - strand, within Xcc-8004.4508.1at 4312.168 kb on + strand, within Xcc-8004.4508.1at 4312.168 kb on + strand, within Xcc-8004.4508.1at 4312.168 kb on + strand, within Xcc-8004.4508.1at 4312.168 kb on + strand, within Xcc-8004.4508.1at 4312.168 kb on + strand, within Xcc-8004.4508.1at 4312.169 kb on - strand, within Xcc-8004.4508.1at 4312.169 kb on - strand, within Xcc-8004.4508.1at 4312.169 kb on - strand, within Xcc-8004.4508.1at 4312.171 kb on + strand, within Xcc-8004.4508.1at 4312.172 kb on - strand, within Xcc-8004.4508.1at 4312.237 kb on + strand, within Xcc-8004.4508.1at 4312.250 kb on - strand, within Xcc-8004.4508.1at 4312.261 kb on + strand, within Xcc-8004.4508.1at 4312.293 kb on + strand, within Xcc-8004.4508.1at 4312.293 kb on + strand, within Xcc-8004.4508.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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4,309,320 + Xcc-8004.4506.1 0.47 -0.2
4,309,321 - Xcc-8004.4506.1 0.47 +0.1
4,309,441 + Xcc-8004.4506.1 0.53 -1.2
4,309,442 - Xcc-8004.4506.1 0.53 -2.3
4,309,551 - Xcc-8004.4506.1 0.60 -2.2
4,309,596 - Xcc-8004.4506.1 0.62 -1.8
4,309,596 - Xcc-8004.4506.1 0.62 -4.0
4,309,657 + Xcc-8004.4506.1 0.66 -2.3
4,309,658 - Xcc-8004.4506.1 0.66 -1.5
4,309,699 - Xcc-8004.4506.1 0.68 -2.9
4,309,699 - Xcc-8004.4506.1 0.68 -2.9
4,309,717 + Xcc-8004.4506.1 0.69 +2.4
4,309,970 - Xcc-8004.4506.1 0.83 -0.2
4,309,970 - Xcc-8004.4506.1 0.83 -0.4
4,309,970 - Xcc-8004.4506.1 0.83 -3.0
4,309,982 + Xcc-8004.4506.1 0.84 -3.4
4,309,982 + Xcc-8004.4506.1 0.84 -1.7
4,309,982 + Xcc-8004.4506.1 0.84 -2.5
4,309,982 + Xcc-8004.4506.1 0.84 +0.3
4,309,983 - Xcc-8004.4506.1 0.84 -1.5
4,310,020 + Xcc-8004.4506.1 0.86 -2.3
4,310,021 - Xcc-8004.4506.1 0.86 -2.0
4,310,068 - Xcc-8004.4506.1 0.89 -1.2
4,310,157 - -1.2
4,310,313 + -3.2
4,310,314 - -1.5
4,310,638 + Xcc-8004.4507.1 0.35 -0.7
4,310,698 - Xcc-8004.4507.1 0.41 -0.7
4,310,755 + Xcc-8004.4507.1 0.46 +0.8
4,310,756 - Xcc-8004.4507.1 0.46 -0.4
4,310,756 - Xcc-8004.4507.1 0.46 -1.7
4,310,778 - Xcc-8004.4507.1 0.48 -2.9
4,310,778 - Xcc-8004.4507.1 0.48 -2.3
4,310,786 + Xcc-8004.4507.1 0.49 -3.5
4,310,799 + Xcc-8004.4507.1 0.50 -3.8
4,310,829 - Xcc-8004.4507.1 0.53 -3.1
4,310,830 + Xcc-8004.4507.1 0.53 -2.3
4,310,830 + Xcc-8004.4507.1 0.53 -2.5
4,311,008 + Xcc-8004.4507.1 0.69 -2.7
4,311,009 - Xcc-8004.4507.1 0.69 -1.5
4,311,009 - Xcc-8004.4507.1 0.69 -0.8
4,311,065 + Xcc-8004.4507.1 0.75 -4.3
4,311,065 + Xcc-8004.4507.1 0.75 -1.6
4,311,066 - Xcc-8004.4507.1 0.75 -1.6
4,311,066 - Xcc-8004.4507.1 0.75 +0.4
4,311,066 - Xcc-8004.4507.1 0.75 -1.7
4,311,092 - Xcc-8004.4507.1 0.77 -1.4
4,311,092 - Xcc-8004.4507.1 0.77 -0.7
4,311,348 + +0.1
4,311,349 - -1.5
4,311,349 - -0.6
4,311,366 + +0.4
4,311,388 + +0.5
4,311,422 + -2.1
4,311,455 - -2.3
4,311,455 - -1.5
4,311,455 - -1.6
4,311,455 - -2.3
4,311,455 - -0.7
4,311,455 - +0.1
4,311,546 - -2.9
4,311,657 + Xcc-8004.4508.1 0.12 -1.7
4,311,658 - Xcc-8004.4508.1 0.12 -1.7
4,311,658 - Xcc-8004.4508.1 0.12 -1.0
4,311,689 - Xcc-8004.4508.1 0.14 +0.7
4,311,721 + Xcc-8004.4508.1 0.15 +0.8
4,311,721 + Xcc-8004.4508.1 0.15 -1.3
4,311,721 + Xcc-8004.4508.1 0.15 -0.2
4,311,722 - Xcc-8004.4508.1 0.15 -1.9
4,311,800 - Xcc-8004.4508.1 0.19 -1.4
4,312,105 - Xcc-8004.4508.1 0.32 -0.5
4,312,168 + Xcc-8004.4508.1 0.35 -3.2
4,312,168 + Xcc-8004.4508.1 0.35 +0.8
4,312,168 + Xcc-8004.4508.1 0.35 -2.6
4,312,168 + Xcc-8004.4508.1 0.35 -1.2
4,312,168 + Xcc-8004.4508.1 0.35 -1.4
4,312,169 - Xcc-8004.4508.1 0.35 +1.3
4,312,169 - Xcc-8004.4508.1 0.35 +0.8
4,312,169 - Xcc-8004.4508.1 0.35 +1.2
4,312,171 + Xcc-8004.4508.1 0.35 -0.7
4,312,172 - Xcc-8004.4508.1 0.35 +0.2
4,312,237 + Xcc-8004.4508.1 0.38 -2.5
4,312,250 - Xcc-8004.4508.1 0.38 -1.5
4,312,261 + Xcc-8004.4508.1 0.39 +0.6
4,312,293 + Xcc-8004.4508.1 0.40 -0.9
4,312,293 + Xcc-8004.4508.1 0.40 -0.2

Or see this region's nucleotide sequence