Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4424.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4420.1 and Xcc-8004.4423.1 overlap by 4 nucleotidesXcc-8004.4423.1 and Xcc-8004.4424.1 overlap by 11 nucleotidesXcc-8004.4424.1 and Xcc-8004.4425.1 overlap by 17 nucleotides Xcc-8004.4420.1: Xcc-8004.4420.1 - General secretion pathway protein D, at 4,230,359 to 4,232,638 Xcc-8004.4420.1 Xcc-8004.4423.1: Xcc-8004.4423.1 - General secretion pathway protein N, at 4,232,635 to 4,233,420 Xcc-8004.4423.1 Xcc-8004.4424.1: Xcc-8004.4424.1 - General secretion pathway protein M, at 4,233,410 to 4,234,051 Xcc-8004.4424.1 Xcc-8004.4425.1: Xcc-8004.4425.1 - General secretion pathway protein L, at 4,234,035 to 4,235,156 Xcc-8004.4425.1 Position (kb) 4233 4234 4235Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4232.704 kb on - strandat 4232.704 kb on - strandat 4233.023 kb on + strand, within Xcc-8004.4423.1at 4233.227 kb on + strand, within Xcc-8004.4423.1at 4233.490 kb on - strand, within Xcc-8004.4424.1at 4233.549 kb on + strand, within Xcc-8004.4424.1at 4233.549 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.612 kb on + strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.613 kb on - strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.981 kb on + strand, within Xcc-8004.4424.1at 4233.982 kb on - strand, within Xcc-8004.4424.1at 4233.982 kb on - strand, within Xcc-8004.4424.1at 4234.036 kb on + strandat 4234.037 kb on - strandat 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.258 kb on + strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.259 kb on - strand, within Xcc-8004.4425.1at 4234.738 kb on + strand, within Xcc-8004.4425.1at 4234.738 kb on + strand, within Xcc-8004.4425.1at 4234.739 kb on - strand, within Xcc-8004.4425.1at 4234.739 kb on - strand, within Xcc-8004.4425.1at 4234.739 kb on - strand, within Xcc-8004.4425.1at 4235.007 kb on + strand, within Xcc-8004.4425.1at 4235.008 kb on - strand, within Xcc-8004.4425.1at 4235.008 kb on - strand, within Xcc-8004.4425.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
remove
4,232,704 - +3.1
4,232,704 - -1.0
4,233,023 + Xcc-8004.4423.1 0.49 -0.1
4,233,227 + Xcc-8004.4423.1 0.75 +1.1
4,233,490 - Xcc-8004.4424.1 0.12 -2.3
4,233,549 + Xcc-8004.4424.1 0.22 -2.3
4,233,549 + Xcc-8004.4424.1 0.22 -1.7
4,233,612 + Xcc-8004.4424.1 0.31 -1.1
4,233,612 + Xcc-8004.4424.1 0.31 -0.1
4,233,612 + Xcc-8004.4424.1 0.31 -4.1
4,233,612 + Xcc-8004.4424.1 0.31 +0.9
4,233,612 + Xcc-8004.4424.1 0.31 -0.7
4,233,613 - Xcc-8004.4424.1 0.32 +0.6
4,233,613 - Xcc-8004.4424.1 0.32 -0.7
4,233,613 - Xcc-8004.4424.1 0.32 -0.3
4,233,613 - Xcc-8004.4424.1 0.32 -1.8
4,233,613 - Xcc-8004.4424.1 0.32 +0.3
4,233,613 - Xcc-8004.4424.1 0.32 -2.3
4,233,613 - Xcc-8004.4424.1 0.32 -1.7
4,233,981 + Xcc-8004.4424.1 0.89 -2.9
4,233,981 + Xcc-8004.4424.1 0.89 -1.6
4,233,981 + Xcc-8004.4424.1 0.89 -0.1
4,233,981 + Xcc-8004.4424.1 0.89 -0.4
4,233,981 + Xcc-8004.4424.1 0.89 -2.5
4,233,982 - Xcc-8004.4424.1 0.89 +0.9
4,233,982 - Xcc-8004.4424.1 0.89 -1.3
4,234,036 + -1.9
4,234,037 - +2.2
4,234,258 + Xcc-8004.4425.1 0.20 -2.2
4,234,258 + Xcc-8004.4425.1 0.20 +0.9
4,234,258 + Xcc-8004.4425.1 0.20 +1.3
4,234,258 + Xcc-8004.4425.1 0.20 -2.6
4,234,259 - Xcc-8004.4425.1 0.20 +2.9
4,234,259 - Xcc-8004.4425.1 0.20 -2.5
4,234,259 - Xcc-8004.4425.1 0.20 -1.1
4,234,259 - Xcc-8004.4425.1 0.20 -2.7
4,234,259 - Xcc-8004.4425.1 0.20 -2.5
4,234,738 + Xcc-8004.4425.1 0.63 -1.6
4,234,738 + Xcc-8004.4425.1 0.63 -0.6
4,234,739 - Xcc-8004.4425.1 0.63 -2.1
4,234,739 - Xcc-8004.4425.1 0.63 +0.1
4,234,739 - Xcc-8004.4425.1 0.63 -2.6
4,235,007 + Xcc-8004.4425.1 0.87 -2.6
4,235,008 - Xcc-8004.4425.1 0.87 -2.7
4,235,008 - Xcc-8004.4425.1 0.87 -2.3

Or see this region's nucleotide sequence