Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4062.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4060.1 and Xcc-8004.4062.1 are separated by 69 nucleotidesXcc-8004.4062.1 and Xcc-8004.4063.1 are separated by 61 nucleotides Xcc-8004.4060.1: Xcc-8004.4060.1 - Exported zinc metalloprotease YfgC precursor, at 3,915,832 to 3,917,478 Xcc-8004.4060.1 Xcc-8004.4062.1: Xcc-8004.4062.1 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 3,917,548 to 3,918,237 Xcc-8004.4062.1 Xcc-8004.4063.1: Xcc-8004.4063.1 - Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3), at 3,918,299 to 3,919,627 Xcc-8004.4063.1 Position (kb) 3917 3918 3919Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3916.744 kb on + strand, within Xcc-8004.4060.1at 3916.745 kb on - strand, within Xcc-8004.4060.1at 3916.865 kb on - strand, within Xcc-8004.4060.1at 3917.131 kb on + strand, within Xcc-8004.4060.1at 3917.131 kb on + strand, within Xcc-8004.4060.1at 3917.132 kb on - strand, within Xcc-8004.4060.1at 3917.206 kb on + strand, within Xcc-8004.4060.1at 3917.206 kb on + strand, within Xcc-8004.4060.1at 3917.206 kb on + strand, within Xcc-8004.4060.1at 3917.231 kb on + strand, within Xcc-8004.4060.1at 3917.231 kb on + strand, within Xcc-8004.4060.1at 3917.232 kb on - strand, within Xcc-8004.4060.1at 3917.232 kb on - strand, within Xcc-8004.4060.1at 3917.232 kb on - strand, within Xcc-8004.4060.1at 3917.232 kb on - strand, within Xcc-8004.4060.1at 3917.242 kb on + strand, within Xcc-8004.4060.1at 3917.242 kb on + strand, within Xcc-8004.4060.1at 3917.242 kb on + strand, within Xcc-8004.4060.1at 3917.242 kb on + strand, within Xcc-8004.4060.1at 3917.242 kb on + strand, within Xcc-8004.4060.1at 3917.242 kb on + strand, within Xcc-8004.4060.1at 3917.242 kb on + strand, within Xcc-8004.4060.1at 3917.242 kb on + strand, within Xcc-8004.4060.1at 3917.242 kb on + strand, within Xcc-8004.4060.1at 3917.242 kb on + strand, within Xcc-8004.4060.1at 3917.243 kb on - strand, within Xcc-8004.4060.1at 3917.243 kb on - strand, within Xcc-8004.4060.1at 3917.243 kb on - strand, within Xcc-8004.4060.1at 3917.243 kb on - strand, within Xcc-8004.4060.1at 3917.243 kb on - strand, within Xcc-8004.4060.1at 3917.243 kb on - strand, within Xcc-8004.4060.1at 3917.243 kb on - strand, within Xcc-8004.4060.1at 3917.293 kb on + strand, within Xcc-8004.4060.1at 3917.293 kb on + strand, within Xcc-8004.4060.1at 3917.293 kb on + strand, within Xcc-8004.4060.1at 3917.293 kb on + strand, within Xcc-8004.4060.1at 3917.294 kb on - strand, within Xcc-8004.4060.1at 3917.294 kb on - strand, within Xcc-8004.4060.1at 3917.294 kb on - strand, within Xcc-8004.4060.1at 3917.294 kb on - strand, within Xcc-8004.4060.1at 3917.308 kb on + strand, within Xcc-8004.4060.1at 3917.374 kb on + strandat 3917.374 kb on + strandat 3917.374 kb on + strandat 3917.374 kb on + strandat 3917.375 kb on - strandat 3917.375 kb on - strandat 3917.375 kb on - strandat 3917.375 kb on - strandat 3917.375 kb on - strandat 3917.506 kb on + strandat 3917.506 kb on + strandat 3917.507 kb on - strandat 3917.511 kb on + strandat 3917.511 kb on + strandat 3917.512 kb on - strandat 3917.512 kb on - strandat 3917.851 kb on + strand, within Xcc-8004.4062.1at 3917.851 kb on + strand, within Xcc-8004.4062.1at 3917.852 kb on - strand, within Xcc-8004.4062.1at 3917.852 kb on - strand, within Xcc-8004.4062.1at 3917.852 kb on - strand, within Xcc-8004.4062.1at 3917.852 kb on - strand, within Xcc-8004.4062.1at 3917.852 kb on - strand, within Xcc-8004.4062.1at 3917.852 kb on - strand, within Xcc-8004.4062.1at 3917.852 kb on - strand, within Xcc-8004.4062.1at 3917.852 kb on - strand, within Xcc-8004.4062.1at 3917.852 kb on - strand, within Xcc-8004.4062.1at 3917.852 kb on - strand, within Xcc-8004.4062.1at 3918.067 kb on + strand, within Xcc-8004.4062.1at 3918.067 kb on + strand, within Xcc-8004.4062.1at 3918.067 kb on + strand, within Xcc-8004.4062.1at 3918.068 kb on - strand, within Xcc-8004.4062.1at 3918.068 kb on - strand, within Xcc-8004.4062.1at 3918.068 kb on - strand, within Xcc-8004.4062.1at 3918.068 kb on - strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.112 kb on + strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.113 kb on - strand, within Xcc-8004.4062.1at 3918.271 kb on + strandat 3918.272 kb on - strandat 3918.272 kb on - strandat 3918.272 kb on - strandat 3918.272 kb on - strandat 3918.272 kb on - strandat 3918.272 kb on - strandat 3918.288 kb on + strandat 3918.310 kb on + strandat 3918.311 kb on - strandat 3918.311 kb on - strandat 3918.311 kb on - strandat 3918.416 kb on - strandat 3918.443 kb on + strand, within Xcc-8004.4063.1at 3918.444 kb on - strand, within Xcc-8004.4063.1at 3918.444 kb on - strand, within Xcc-8004.4063.1at 3918.542 kb on + strand, within Xcc-8004.4063.1at 3918.543 kb on - strand, within Xcc-8004.4063.1at 3918.603 kb on - strand, within Xcc-8004.4063.1at 3918.603 kb on - strand, within Xcc-8004.4063.1at 3918.603 kb on - strand, within Xcc-8004.4063.1at 3918.873 kb on - strand, within Xcc-8004.4063.1at 3918.990 kb on - strand, within Xcc-8004.4063.1at 3918.990 kb on - strand, within Xcc-8004.4063.1at 3918.990 kb on - strand, within Xcc-8004.4063.1at 3919.099 kb on - strand, within Xcc-8004.4063.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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3,916,744 + Xcc-8004.4060.1 0.55 -0.2
3,916,745 - Xcc-8004.4060.1 0.55 -2.0
3,916,865 - Xcc-8004.4060.1 0.63 -1.1
3,917,131 + Xcc-8004.4060.1 0.79 -2.6
3,917,131 + Xcc-8004.4060.1 0.79 -1.4
3,917,132 - Xcc-8004.4060.1 0.79 -1.8
3,917,206 + Xcc-8004.4060.1 0.83 -1.6
3,917,206 + Xcc-8004.4060.1 0.83 -0.5
3,917,206 + Xcc-8004.4060.1 0.83 -1.2
3,917,231 + Xcc-8004.4060.1 0.85 -0.5
3,917,231 + Xcc-8004.4060.1 0.85 -1.7
3,917,232 - Xcc-8004.4060.1 0.85 -1.3
3,917,232 - Xcc-8004.4060.1 0.85 +0.8
3,917,232 - Xcc-8004.4060.1 0.85 -0.8
3,917,232 - Xcc-8004.4060.1 0.85 -1.5
3,917,242 + Xcc-8004.4060.1 0.86 -1.5
3,917,242 + Xcc-8004.4060.1 0.86 -0.8
3,917,242 + Xcc-8004.4060.1 0.86 -0.8
3,917,242 + Xcc-8004.4060.1 0.86 -2.4
3,917,242 + Xcc-8004.4060.1 0.86 -3.3
3,917,242 + Xcc-8004.4060.1 0.86 -1.5
3,917,242 + Xcc-8004.4060.1 0.86 -0.6
3,917,242 + Xcc-8004.4060.1 0.86 -0.0
3,917,242 + Xcc-8004.4060.1 0.86 +1.8
3,917,242 + Xcc-8004.4060.1 0.86 +0.1
3,917,243 - Xcc-8004.4060.1 0.86 -0.9
3,917,243 - Xcc-8004.4060.1 0.86 -1.1
3,917,243 - Xcc-8004.4060.1 0.86 +0.0
3,917,243 - Xcc-8004.4060.1 0.86 +0.8
3,917,243 - Xcc-8004.4060.1 0.86 -2.0
3,917,243 - Xcc-8004.4060.1 0.86 -0.8
3,917,243 - Xcc-8004.4060.1 0.86 -1.8
3,917,293 + Xcc-8004.4060.1 0.89 -1.5
3,917,293 + Xcc-8004.4060.1 0.89 -1.8
3,917,293 + Xcc-8004.4060.1 0.89 +1.2
3,917,293 + Xcc-8004.4060.1 0.89 -1.9
3,917,294 - Xcc-8004.4060.1 0.89 +0.3
3,917,294 - Xcc-8004.4060.1 0.89 -1.2
3,917,294 - Xcc-8004.4060.1 0.89 +0.8
3,917,294 - Xcc-8004.4060.1 0.89 -1.9
3,917,308 + Xcc-8004.4060.1 0.90 -0.2
3,917,374 + -1.3
3,917,374 + -2.7
3,917,374 + -2.8
3,917,374 + -1.8
3,917,375 - +0.9
3,917,375 - -1.5
3,917,375 - -1.4
3,917,375 - -2.5
3,917,375 - +0.8
3,917,506 + +0.1
3,917,506 + +0.6
3,917,507 - -1.3
3,917,511 + -2.9
3,917,511 + -0.6
3,917,512 - -1.6
3,917,512 - -0.8
3,917,851 + Xcc-8004.4062.1 0.44 -0.9
3,917,851 + Xcc-8004.4062.1 0.44 -0.8
3,917,852 - Xcc-8004.4062.1 0.44 -1.2
3,917,852 - Xcc-8004.4062.1 0.44 -2.7
3,917,852 - Xcc-8004.4062.1 0.44 -2.6
3,917,852 - Xcc-8004.4062.1 0.44 -1.5
3,917,852 - Xcc-8004.4062.1 0.44 -1.5
3,917,852 - Xcc-8004.4062.1 0.44 -0.4
3,917,852 - Xcc-8004.4062.1 0.44 -3.3
3,917,852 - Xcc-8004.4062.1 0.44 -1.2
3,917,852 - Xcc-8004.4062.1 0.44 -1.7
3,917,852 - Xcc-8004.4062.1 0.44 -0.8
3,918,067 + Xcc-8004.4062.1 0.75 -1.5
3,918,067 + Xcc-8004.4062.1 0.75 -1.5
3,918,067 + Xcc-8004.4062.1 0.75 -1.2
3,918,068 - Xcc-8004.4062.1 0.75 +0.2
3,918,068 - Xcc-8004.4062.1 0.75 -1.2
3,918,068 - Xcc-8004.4062.1 0.75 -1.1
3,918,068 - Xcc-8004.4062.1 0.75 -1.2
3,918,112 + Xcc-8004.4062.1 0.82 -0.8
3,918,112 + Xcc-8004.4062.1 0.82 +1.4
3,918,112 + Xcc-8004.4062.1 0.82 -2.4
3,918,112 + Xcc-8004.4062.1 0.82 -1.2
3,918,112 + Xcc-8004.4062.1 0.82 +0.5
3,918,112 + Xcc-8004.4062.1 0.82 -2.5
3,918,112 + Xcc-8004.4062.1 0.82 +0.4
3,918,112 + Xcc-8004.4062.1 0.82 -2.0
3,918,112 + Xcc-8004.4062.1 0.82 -2.2
3,918,112 + Xcc-8004.4062.1 0.82 -1.8
3,918,112 + Xcc-8004.4062.1 0.82 -4.1
3,918,113 - Xcc-8004.4062.1 0.82 -2.9
3,918,113 - Xcc-8004.4062.1 0.82 -2.8
3,918,113 - Xcc-8004.4062.1 0.82 -1.9
3,918,113 - Xcc-8004.4062.1 0.82 -2.2
3,918,113 - Xcc-8004.4062.1 0.82 -1.9
3,918,113 - Xcc-8004.4062.1 0.82 -2.7
3,918,113 - Xcc-8004.4062.1 0.82 +0.3
3,918,113 - Xcc-8004.4062.1 0.82 -1.4
3,918,113 - Xcc-8004.4062.1 0.82 -2.4
3,918,113 - Xcc-8004.4062.1 0.82 -0.7
3,918,113 - Xcc-8004.4062.1 0.82 -3.4
3,918,113 - Xcc-8004.4062.1 0.82 -0.2
3,918,113 - Xcc-8004.4062.1 0.82 -3.0
3,918,113 - Xcc-8004.4062.1 0.82 -2.5
3,918,113 - Xcc-8004.4062.1 0.82 +0.8
3,918,113 - Xcc-8004.4062.1 0.82 -0.4
3,918,113 - Xcc-8004.4062.1 0.82 -0.9
3,918,271 + -2.4
3,918,272 - -2.4
3,918,272 - -0.2
3,918,272 - -0.5
3,918,272 - +0.8
3,918,272 - +0.7
3,918,272 - -1.8
3,918,288 + -0.0
3,918,310 + +0.5
3,918,311 - +0.5
3,918,311 - +0.1
3,918,311 - -2.1
3,918,416 - -1.2
3,918,443 + Xcc-8004.4063.1 0.11 -0.0
3,918,444 - Xcc-8004.4063.1 0.11 -1.2
3,918,444 - Xcc-8004.4063.1 0.11 -1.1
3,918,542 + Xcc-8004.4063.1 0.18 -2.1
3,918,543 - Xcc-8004.4063.1 0.18 -1.0
3,918,603 - Xcc-8004.4063.1 0.23 -4.2
3,918,603 - Xcc-8004.4063.1 0.23 +0.3
3,918,603 - Xcc-8004.4063.1 0.23 -0.5
3,918,873 - Xcc-8004.4063.1 0.43 +0.2
3,918,990 - Xcc-8004.4063.1 0.52 -1.8
3,918,990 - Xcc-8004.4063.1 0.52 -0.6
3,918,990 - Xcc-8004.4063.1 0.52 +0.8
3,919,099 - Xcc-8004.4063.1 0.60 -1.1

Or see this region's nucleotide sequence