Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.401.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.400.1 and Xcc-8004.401.1 are separated by 97 nucleotidesXcc-8004.401.1 and Xcc-8004.402.1 are separated by 169 nucleotides Xcc-8004.400.1: Xcc-8004.400.1 - Transcriptional activator MetR, at 386,987 to 387,892 Xcc-8004.400.1 Xcc-8004.401.1: Xcc-8004.401.1 - FMN reductase (EC 1.5.1.29), at 387,990 to 388,583 Xcc-8004.401.1 Xcc-8004.402.1: Xcc-8004.402.1 - FIG01209770: hypothetical protein, at 388,753 to 389,772 Xcc-8004.402.1 Position (kb) 387 388 389Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 387.048 kb on + strandat 387.062 kb on - strandat 387.147 kb on + strand, within Xcc-8004.400.1at 387.147 kb on + strand, within Xcc-8004.400.1at 387.147 kb on + strand, within Xcc-8004.400.1at 387.147 kb on + strand, within Xcc-8004.400.1at 387.147 kb on + strand, within Xcc-8004.400.1at 387.147 kb on + strand, within Xcc-8004.400.1at 387.229 kb on + strand, within Xcc-8004.400.1at 387.277 kb on + strand, within Xcc-8004.400.1at 387.277 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.279 kb on + strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.280 kb on - strand, within Xcc-8004.400.1at 387.284 kb on - strand, within Xcc-8004.400.1at 387.351 kb on + strand, within Xcc-8004.400.1at 387.352 kb on - strand, within Xcc-8004.400.1at 387.402 kb on + strand, within Xcc-8004.400.1at 387.403 kb on - strand, within Xcc-8004.400.1at 387.438 kb on + strand, within Xcc-8004.400.1at 387.439 kb on - strand, within Xcc-8004.400.1at 387.553 kb on - strand, within Xcc-8004.400.1at 387.582 kb on + strand, within Xcc-8004.400.1at 387.703 kb on - strand, within Xcc-8004.400.1at 387.703 kb on - strand, within Xcc-8004.400.1at 387.935 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.956 kb on + strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.957 kb on - strandat 387.977 kb on + strandat 387.977 kb on + strandat 387.977 kb on + strandat 387.977 kb on + strandat 387.978 kb on - strandat 387.978 kb on - strandat 387.978 kb on - strandat 387.978 kb on - strandat 387.978 kb on - strandat 387.978 kb on - strandat 388.252 kb on - strand, within Xcc-8004.401.1at 388.435 kb on - strand, within Xcc-8004.401.1at 388.435 kb on - strand, within Xcc-8004.401.1at 388.461 kb on + strand, within Xcc-8004.401.1at 388.805 kb on - strandat 388.821 kb on + strandat 388.821 kb on + strandat 388.826 kb on - strandat 389.036 kb on + strand, within Xcc-8004.402.1at 389.076 kb on + strand, within Xcc-8004.402.1at 389.110 kb on + strand, within Xcc-8004.402.1at 389.110 kb on + strand, within Xcc-8004.402.1at 389.111 kb on - strand, within Xcc-8004.402.1at 389.111 kb on - strand, within Xcc-8004.402.1at 389.235 kb on + strand, within Xcc-8004.402.1at 389.239 kb on + strand, within Xcc-8004.402.1at 389.240 kb on - strand, within Xcc-8004.402.1at 389.299 kb on + strand, within Xcc-8004.402.1at 389.299 kb on + strand, within Xcc-8004.402.1at 389.300 kb on - strand, within Xcc-8004.402.1at 389.374 kb on + strand, within Xcc-8004.402.1at 389.443 kb on + strand, within Xcc-8004.402.1at 389.543 kb on - strand, within Xcc-8004.402.1at 389.543 kb on - strand, within Xcc-8004.402.1at 389.573 kb on - strand, within Xcc-8004.402.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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387,048 + -0.9
387,062 - -0.8
387,147 + Xcc-8004.400.1 0.18 -1.5
387,147 + Xcc-8004.400.1 0.18 -1.1
387,147 + Xcc-8004.400.1 0.18 -0.3
387,147 + Xcc-8004.400.1 0.18 +1.9
387,147 + Xcc-8004.400.1 0.18 +3.1
387,147 + Xcc-8004.400.1 0.18 +3.6
387,229 + Xcc-8004.400.1 0.27 -0.7
387,277 + Xcc-8004.400.1 0.32 +0.2
387,277 + Xcc-8004.400.1 0.32 +2.7
387,279 + Xcc-8004.400.1 0.32 +0.5
387,279 + Xcc-8004.400.1 0.32 +1.7
387,279 + Xcc-8004.400.1 0.32 -0.4
387,279 + Xcc-8004.400.1 0.32 -0.6
387,279 + Xcc-8004.400.1 0.32 -1.7
387,279 + Xcc-8004.400.1 0.32 -0.8
387,279 + Xcc-8004.400.1 0.32 -0.4
387,280 - Xcc-8004.400.1 0.32 +0.7
387,280 - Xcc-8004.400.1 0.32 -0.8
387,280 - Xcc-8004.400.1 0.32 -1.1
387,280 - Xcc-8004.400.1 0.32 -0.8
387,280 - Xcc-8004.400.1 0.32 +0.3
387,280 - Xcc-8004.400.1 0.32 +1.7
387,280 - Xcc-8004.400.1 0.32 +0.2
387,280 - Xcc-8004.400.1 0.32 +1.4
387,280 - Xcc-8004.400.1 0.32 +1.6
387,284 - Xcc-8004.400.1 0.33 -1.4
387,351 + Xcc-8004.400.1 0.40 +2.7
387,352 - Xcc-8004.400.1 0.40 -1.1
387,402 + Xcc-8004.400.1 0.46 +0.2
387,403 - Xcc-8004.400.1 0.46 -0.1
387,438 + Xcc-8004.400.1 0.50 +0.0
387,439 - Xcc-8004.400.1 0.50 +0.3
387,553 - Xcc-8004.400.1 0.62 -0.5
387,582 + Xcc-8004.400.1 0.66 -0.9
387,703 - Xcc-8004.400.1 0.79 -1.1
387,703 - Xcc-8004.400.1 0.79 -1.8
387,935 + -1.4
387,956 + -0.3
387,956 + +1.3
387,956 + -2.5
387,956 + -2.7
387,956 + +1.3
387,956 + -0.8
387,956 + -0.7
387,956 + -1.6
387,956 + -0.3
387,956 + -0.8
387,956 + +1.5
387,956 + +2.1
387,956 + -1.6
387,956 + -1.1
387,957 - +0.4
387,957 - +1.7
387,957 - -0.6
387,957 - -3.7
387,957 - -1.7
387,957 - +1.6
387,957 - +0.3
387,957 - -2.1
387,977 + +0.3
387,977 + +2.2
387,977 + -1.3
387,977 + +0.2
387,978 - -3.3
387,978 - -3.0
387,978 - -0.4
387,978 - -3.0
387,978 - -1.6
387,978 - -1.7
388,252 - Xcc-8004.401.1 0.44 -1.3
388,435 - Xcc-8004.401.1 0.75 -2.4
388,435 - Xcc-8004.401.1 0.75 -1.8
388,461 + Xcc-8004.401.1 0.79 +1.2
388,805 - -3.8
388,821 + +4.4
388,821 + -2.0
388,826 - +0.3
389,036 + Xcc-8004.402.1 0.28 -1.3
389,076 + Xcc-8004.402.1 0.32 +2.3
389,110 + Xcc-8004.402.1 0.35 +0.7
389,110 + Xcc-8004.402.1 0.35 -3.1
389,111 - Xcc-8004.402.1 0.35 -1.4
389,111 - Xcc-8004.402.1 0.35 -1.3
389,235 + Xcc-8004.402.1 0.47 -3.1
389,239 + Xcc-8004.402.1 0.48 -1.4
389,240 - Xcc-8004.402.1 0.48 -1.4
389,299 + Xcc-8004.402.1 0.54 -0.6
389,299 + Xcc-8004.402.1 0.54 -1.6
389,300 - Xcc-8004.402.1 0.54 -2.1
389,374 + Xcc-8004.402.1 0.61 -0.1
389,443 + Xcc-8004.402.1 0.68 +0.7
389,543 - Xcc-8004.402.1 0.77 -3.4
389,543 - Xcc-8004.402.1 0.77 -0.3
389,573 - Xcc-8004.402.1 0.80 -2.1

Or see this region's nucleotide sequence