Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3954.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3950.1 and Xcc-8004.3953.1 are separated by 382 nucleotidesXcc-8004.3953.1 and Xcc-8004.3954.1 are separated by 32 nucleotidesXcc-8004.3954.1 and Xcc-8004.3955.1 overlap by 1 nucleotides Xcc-8004.3950.1: Xcc-8004.3950.1 - Adenylosuccinate synthetase (EC 6.3.4.4), at 3,827,083 to 3,828,375 Xcc-8004.3950.1 Xcc-8004.3953.1: Xcc-8004.3953.1 - Putative inner membrane protein YjeT (clustered with HflC), at 3,828,758 to 3,829,117 Xcc-8004.3953.1 Xcc-8004.3954.1: Xcc-8004.3954.1 - HflC protein, at 3,829,150 to 3,830,013 Xcc-8004.3954.1 Xcc-8004.3955.1: Xcc-8004.3955.1 - HflK protein, at 3,830,013 to 3,831,155 Xcc-8004.3955.1 Position (kb) 3829 3830 3831Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3828.580 kb on + strandat 3828.581 kb on - strandat 3828.920 kb on + strand, within Xcc-8004.3953.1at 3828.920 kb on + strand, within Xcc-8004.3953.1at 3828.921 kb on - strand, within Xcc-8004.3953.1at 3828.998 kb on + strand, within Xcc-8004.3953.1at 3828.999 kb on - strand, within Xcc-8004.3953.1at 3829.099 kb on + strandat 3829.099 kb on + strandat 3829.099 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.101 kb on + strandat 3829.102 kb on - strandat 3829.102 kb on - strandat 3829.102 kb on - strandat 3829.102 kb on - strandat 3829.102 kb on - strandat 3829.102 kb on - strandat 3829.102 kb on - strandat 3829.102 kb on - strandat 3829.170 kb on - strandat 3829.236 kb on - strandat 3829.253 kb on + strand, within Xcc-8004.3954.1at 3829.253 kb on + strand, within Xcc-8004.3954.1at 3829.263 kb on - strand, within Xcc-8004.3954.1at 3829.263 kb on - strand, within Xcc-8004.3954.1at 3829.295 kb on + strand, within Xcc-8004.3954.1at 3829.296 kb on - strand, within Xcc-8004.3954.1at 3829.296 kb on - strand, within Xcc-8004.3954.1at 3829.719 kb on - strand, within Xcc-8004.3954.1at 3829.719 kb on - strand, within Xcc-8004.3954.1at 3829.742 kb on + strand, within Xcc-8004.3954.1at 3829.742 kb on + strand, within Xcc-8004.3954.1at 3829.742 kb on + strand, within Xcc-8004.3954.1at 3829.742 kb on + strand, within Xcc-8004.3954.1at 3829.743 kb on - strand, within Xcc-8004.3954.1at 3829.743 kb on - strand, within Xcc-8004.3954.1at 3829.794 kb on - strand, within Xcc-8004.3954.1at 3829.843 kb on + strand, within Xcc-8004.3954.1at 3830.151 kb on - strand, within Xcc-8004.3955.1at 3830.200 kb on + strand, within Xcc-8004.3955.1at 3830.200 kb on + strand, within Xcc-8004.3955.1at 3830.200 kb on + strand, within Xcc-8004.3955.1at 3830.200 kb on + strand, within Xcc-8004.3955.1at 3830.200 kb on + strand, within Xcc-8004.3955.1at 3830.200 kb on + strand, within Xcc-8004.3955.1at 3830.200 kb on + strand, within Xcc-8004.3955.1at 3830.201 kb on - strand, within Xcc-8004.3955.1at 3830.201 kb on - strand, within Xcc-8004.3955.1at 3830.201 kb on - strand, within Xcc-8004.3955.1at 3830.201 kb on - strand, within Xcc-8004.3955.1at 3830.201 kb on - strand, within Xcc-8004.3955.1at 3830.201 kb on - strand, within Xcc-8004.3955.1at 3830.308 kb on + strand, within Xcc-8004.3955.1at 3830.308 kb on + strand, within Xcc-8004.3955.1at 3830.309 kb on - strand, within Xcc-8004.3955.1at 3830.572 kb on + strand, within Xcc-8004.3955.1at 3830.573 kb on - strand, within Xcc-8004.3955.1at 3830.573 kb on - strand, within Xcc-8004.3955.1at 3830.573 kb on - strand, within Xcc-8004.3955.1at 3830.731 kb on + strand, within Xcc-8004.3955.1at 3830.731 kb on + strand, within Xcc-8004.3955.1at 3830.731 kb on + strand, within Xcc-8004.3955.1at 3830.731 kb on + strand, within Xcc-8004.3955.1at 3830.732 kb on - strand, within Xcc-8004.3955.1at 3830.732 kb on - strand, within Xcc-8004.3955.1at 3830.732 kb on - strand, within Xcc-8004.3955.1at 3830.755 kb on + strand, within Xcc-8004.3955.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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3,828,580 + -0.7
3,828,581 - +0.0
3,828,920 + Xcc-8004.3953.1 0.45 +0.5
3,828,920 + Xcc-8004.3953.1 0.45 -1.1
3,828,921 - Xcc-8004.3953.1 0.45 -1.6
3,828,998 + Xcc-8004.3953.1 0.67 -0.7
3,828,999 - Xcc-8004.3953.1 0.67 -0.3
3,829,099 + +2.1
3,829,099 + +0.8
3,829,099 + -1.5
3,829,101 + +0.2
3,829,101 + -2.0
3,829,101 + -1.1
3,829,101 + -1.2
3,829,101 + -2.3
3,829,101 + +0.8
3,829,101 + -2.2
3,829,101 + -1.7
3,829,101 + -3.0
3,829,101 + -1.0
3,829,101 + +1.5
3,829,101 + -0.2
3,829,101 + -1.2
3,829,101 + -0.8
3,829,102 - -0.2
3,829,102 - -0.2
3,829,102 - +1.8
3,829,102 - +2.3
3,829,102 - +2.0
3,829,102 - +0.7
3,829,102 - +0.3
3,829,102 - -0.8
3,829,170 - +0.8
3,829,236 - -0.6
3,829,253 + Xcc-8004.3954.1 0.12 -0.2
3,829,253 + Xcc-8004.3954.1 0.12 -3.3
3,829,263 - Xcc-8004.3954.1 0.13 -2.4
3,829,263 - Xcc-8004.3954.1 0.13 -0.6
3,829,295 + Xcc-8004.3954.1 0.17 -2.5
3,829,296 - Xcc-8004.3954.1 0.17 -0.7
3,829,296 - Xcc-8004.3954.1 0.17 -1.3
3,829,719 - Xcc-8004.3954.1 0.66 -2.4
3,829,719 - Xcc-8004.3954.1 0.66 -3.3
3,829,742 + Xcc-8004.3954.1 0.69 -3.4
3,829,742 + Xcc-8004.3954.1 0.69 -1.2
3,829,742 + Xcc-8004.3954.1 0.69 -3.2
3,829,742 + Xcc-8004.3954.1 0.69 -0.5
3,829,743 - Xcc-8004.3954.1 0.69 +0.1
3,829,743 - Xcc-8004.3954.1 0.69 -0.2
3,829,794 - Xcc-8004.3954.1 0.75 -1.2
3,829,843 + Xcc-8004.3954.1 0.80 -1.5
3,830,151 - Xcc-8004.3955.1 0.12 -3.0
3,830,200 + Xcc-8004.3955.1 0.16 -1.0
3,830,200 + Xcc-8004.3955.1 0.16 -2.2
3,830,200 + Xcc-8004.3955.1 0.16 +0.0
3,830,200 + Xcc-8004.3955.1 0.16 +0.8
3,830,200 + Xcc-8004.3955.1 0.16 -1.2
3,830,200 + Xcc-8004.3955.1 0.16 -0.2
3,830,200 + Xcc-8004.3955.1 0.16 -1.2
3,830,201 - Xcc-8004.3955.1 0.16 -0.8
3,830,201 - Xcc-8004.3955.1 0.16 -1.8
3,830,201 - Xcc-8004.3955.1 0.16 -0.2
3,830,201 - Xcc-8004.3955.1 0.16 -1.3
3,830,201 - Xcc-8004.3955.1 0.16 -0.7
3,830,201 - Xcc-8004.3955.1 0.16 +0.8
3,830,308 + Xcc-8004.3955.1 0.26 -2.0
3,830,308 + Xcc-8004.3955.1 0.26 -0.6
3,830,309 - Xcc-8004.3955.1 0.26 +1.7
3,830,572 + Xcc-8004.3955.1 0.49 -2.0
3,830,573 - Xcc-8004.3955.1 0.49 -1.0
3,830,573 - Xcc-8004.3955.1 0.49 -0.8
3,830,573 - Xcc-8004.3955.1 0.49 -2.4
3,830,731 + Xcc-8004.3955.1 0.63 +0.2
3,830,731 + Xcc-8004.3955.1 0.63 -0.8
3,830,731 + Xcc-8004.3955.1 0.63 -1.8
3,830,731 + Xcc-8004.3955.1 0.63 -1.6
3,830,732 - Xcc-8004.3955.1 0.63 -0.8
3,830,732 - Xcc-8004.3955.1 0.63 +0.2
3,830,732 - Xcc-8004.3955.1 0.63 -2.4
3,830,755 + Xcc-8004.3955.1 0.65 +1.4

Or see this region's nucleotide sequence