Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3870.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3868.1 and Xcc-8004.3869.1 are separated by 100 nucleotidesXcc-8004.3869.1 and Xcc-8004.3870.1 overlap by 4 nucleotidesXcc-8004.3870.1 and Xcc-8004.3871.1 are separated by 118 nucleotides Xcc-8004.3868.1: Xcc-8004.3868.1 - Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB, at 3,734,041 to 3,735,945 Xcc-8004.3868.1 Xcc-8004.3869.1: Xcc-8004.3869.1 - FIG01211837: hypothetical protein, at 3,736,046 to 3,736,816 Xcc-8004.3869.1 Xcc-8004.3870.1: Xcc-8004.3870.1 - Inner membrane protein, at 3,736,813 to 3,738,468 Xcc-8004.3870.1 Xcc-8004.3871.1: Xcc-8004.3871.1 - Dipeptidyl carboxypeptidase, at 3,738,587 to 3,740,605 Xcc-8004.3871.1 Position (kb) 3736 3737 3738 3739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3735.962 kb on + strandat 3736.209 kb on - strand, within Xcc-8004.3869.1at 3736.209 kb on - strand, within Xcc-8004.3869.1at 3736.209 kb on - strand, within Xcc-8004.3869.1at 3736.382 kb on + strand, within Xcc-8004.3869.1at 3736.383 kb on - strand, within Xcc-8004.3869.1at 3736.383 kb on - strand, within Xcc-8004.3869.1at 3736.473 kb on - strand, within Xcc-8004.3869.1at 3736.565 kb on + strand, within Xcc-8004.3869.1at 3736.583 kb on + strand, within Xcc-8004.3869.1at 3736.584 kb on - strand, within Xcc-8004.3869.1at 3736.584 kb on - strand, within Xcc-8004.3869.1at 3736.584 kb on - strand, within Xcc-8004.3869.1at 3736.665 kb on + strand, within Xcc-8004.3869.1at 3736.665 kb on + strand, within Xcc-8004.3869.1at 3736.749 kb on - strandat 3737.116 kb on + strand, within Xcc-8004.3870.1at 3737.116 kb on + strand, within Xcc-8004.3870.1at 3737.116 kb on + strand, within Xcc-8004.3870.1at 3737.116 kb on + strand, within Xcc-8004.3870.1at 3737.116 kb on + strand, within Xcc-8004.3870.1at 3737.117 kb on - strand, within Xcc-8004.3870.1at 3737.117 kb on - strand, within Xcc-8004.3870.1at 3737.117 kb on - strand, within Xcc-8004.3870.1at 3737.117 kb on - strand, within Xcc-8004.3870.1at 3737.128 kb on + strand, within Xcc-8004.3870.1at 3737.128 kb on + strand, within Xcc-8004.3870.1at 3737.128 kb on + strand, within Xcc-8004.3870.1at 3737.128 kb on + strand, within Xcc-8004.3870.1at 3737.128 kb on + strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.129 kb on - strand, within Xcc-8004.3870.1at 3737.137 kb on + strand, within Xcc-8004.3870.1at 3737.137 kb on + strand, within Xcc-8004.3870.1at 3737.138 kb on - strand, within Xcc-8004.3870.1at 3737.138 kb on - strand, within Xcc-8004.3870.1at 3737.138 kb on - strand, within Xcc-8004.3870.1at 3737.234 kb on - strand, within Xcc-8004.3870.1at 3737.234 kb on - strand, within Xcc-8004.3870.1at 3737.319 kb on + strand, within Xcc-8004.3870.1at 3737.320 kb on - strand, within Xcc-8004.3870.1at 3737.392 kb on - strand, within Xcc-8004.3870.1at 3737.411 kb on - strand, within Xcc-8004.3870.1at 3737.411 kb on - strand, within Xcc-8004.3870.1at 3737.431 kb on + strand, within Xcc-8004.3870.1at 3737.431 kb on + strand, within Xcc-8004.3870.1at 3737.431 kb on + strand, within Xcc-8004.3870.1at 3737.431 kb on + strand, within Xcc-8004.3870.1at 3737.431 kb on + strand, within Xcc-8004.3870.1at 3737.432 kb on - strand, within Xcc-8004.3870.1at 3738.005 kb on - strand, within Xcc-8004.3870.1at 3738.118 kb on + strand, within Xcc-8004.3870.1at 3738.119 kb on - strand, within Xcc-8004.3870.1at 3738.119 kb on - strand, within Xcc-8004.3870.1at 3738.119 kb on - strand, within Xcc-8004.3870.1at 3738.119 kb on - strand, within Xcc-8004.3870.1at 3738.173 kb on - strand, within Xcc-8004.3870.1at 3738.191 kb on - strand, within Xcc-8004.3870.1at 3738.191 kb on - strand, within Xcc-8004.3870.1at 3738.191 kb on - strand, within Xcc-8004.3870.1at 3738.191 kb on - strand, within Xcc-8004.3870.1at 3738.232 kb on + strand, within Xcc-8004.3870.1at 3738.232 kb on + strand, within Xcc-8004.3870.1at 3738.233 kb on - strand, within Xcc-8004.3870.1at 3738.233 kb on - strand, within Xcc-8004.3870.1at 3738.233 kb on - strand, within Xcc-8004.3870.1at 3738.364 kb on + strandat 3738.364 kb on + strandat 3738.365 kb on - strandat 3738.365 kb on - strandat 3738.427 kb on + strandat 3738.427 kb on + strandat 3738.428 kb on - strandat 3738.428 kb on - strandat 3738.428 kb on - strandat 3738.428 kb on - strandat 3738.428 kb on - strandat 3738.483 kb on - strandat 3738.528 kb on - strandat 3738.554 kb on - strandat 3738.631 kb on + strandat 3738.632 kb on - strandat 3738.746 kb on + strandat 3738.747 kb on - strandat 3738.797 kb on + strand, within Xcc-8004.3871.1at 3738.797 kb on + strand, within Xcc-8004.3871.1at 3738.797 kb on + strand, within Xcc-8004.3871.1at 3738.798 kb on - strand, within Xcc-8004.3871.1at 3738.798 kb on - strand, within Xcc-8004.3871.1at 3738.798 kb on - strand, within Xcc-8004.3871.1at 3738.888 kb on - strand, within Xcc-8004.3871.1at 3738.933 kb on + strand, within Xcc-8004.3871.1at 3738.934 kb on - strand, within Xcc-8004.3871.1at 3739.022 kb on + strand, within Xcc-8004.3871.1at 3739.116 kb on - strand, within Xcc-8004.3871.1at 3739.116 kb on - strand, within Xcc-8004.3871.1at 3739.178 kb on + strand, within Xcc-8004.3871.1at 3739.178 kb on + strand, within Xcc-8004.3871.1at 3739.179 kb on - strand, within Xcc-8004.3871.1at 3739.259 kb on + strand, within Xcc-8004.3871.1at 3739.325 kb on + strand, within Xcc-8004.3871.1at 3739.326 kb on - strand, within Xcc-8004.3871.1at 3739.326 kb on - strand, within Xcc-8004.3871.1at 3739.344 kb on - strand, within Xcc-8004.3871.1at 3739.370 kb on + strand, within Xcc-8004.3871.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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3,735,962 + -0.0
3,736,209 - Xcc-8004.3869.1 0.21 -0.5
3,736,209 - Xcc-8004.3869.1 0.21 -0.7
3,736,209 - Xcc-8004.3869.1 0.21 -2.0
3,736,382 + Xcc-8004.3869.1 0.44 -1.8
3,736,383 - Xcc-8004.3869.1 0.44 +0.5
3,736,383 - Xcc-8004.3869.1 0.44 -0.5
3,736,473 - Xcc-8004.3869.1 0.55 -1.4
3,736,565 + Xcc-8004.3869.1 0.67 -0.0
3,736,583 + Xcc-8004.3869.1 0.70 -2.0
3,736,584 - Xcc-8004.3869.1 0.70 +1.3
3,736,584 - Xcc-8004.3869.1 0.70 -0.3
3,736,584 - Xcc-8004.3869.1 0.70 +1.4
3,736,665 + Xcc-8004.3869.1 0.80 -1.0
3,736,665 + Xcc-8004.3869.1 0.80 -3.0
3,736,749 - -0.7
3,737,116 + Xcc-8004.3870.1 0.18 -0.3
3,737,116 + Xcc-8004.3870.1 0.18 -1.8
3,737,116 + Xcc-8004.3870.1 0.18 +0.1
3,737,116 + Xcc-8004.3870.1 0.18 -1.3
3,737,116 + Xcc-8004.3870.1 0.18 -3.2
3,737,117 - Xcc-8004.3870.1 0.18 -1.4
3,737,117 - Xcc-8004.3870.1 0.18 -1.5
3,737,117 - Xcc-8004.3870.1 0.18 -2.2
3,737,117 - Xcc-8004.3870.1 0.18 -0.6
3,737,128 + Xcc-8004.3870.1 0.19 +1.4
3,737,128 + Xcc-8004.3870.1 0.19 +1.8
3,737,128 + Xcc-8004.3870.1 0.19 -1.3
3,737,128 + Xcc-8004.3870.1 0.19 -1.0
3,737,128 + Xcc-8004.3870.1 0.19 -1.0
3,737,129 - Xcc-8004.3870.1 0.19 -0.8
3,737,129 - Xcc-8004.3870.1 0.19 -1.4
3,737,129 - Xcc-8004.3870.1 0.19 +0.7
3,737,129 - Xcc-8004.3870.1 0.19 -0.5
3,737,129 - Xcc-8004.3870.1 0.19 -0.3
3,737,129 - Xcc-8004.3870.1 0.19 -1.4
3,737,137 + Xcc-8004.3870.1 0.20 -3.8
3,737,137 + Xcc-8004.3870.1 0.20 -2.1
3,737,138 - Xcc-8004.3870.1 0.20 -0.4
3,737,138 - Xcc-8004.3870.1 0.20 -1.7
3,737,138 - Xcc-8004.3870.1 0.20 -2.5
3,737,234 - Xcc-8004.3870.1 0.25 -2.7
3,737,234 - Xcc-8004.3870.1 0.25 -1.2
3,737,319 + Xcc-8004.3870.1 0.31 -1.6
3,737,320 - Xcc-8004.3870.1 0.31 -2.2
3,737,392 - Xcc-8004.3870.1 0.35 -1.2
3,737,411 - Xcc-8004.3870.1 0.36 +0.1
3,737,411 - Xcc-8004.3870.1 0.36 -1.8
3,737,431 + Xcc-8004.3870.1 0.37 -1.8
3,737,431 + Xcc-8004.3870.1 0.37 -0.2
3,737,431 + Xcc-8004.3870.1 0.37 -0.7
3,737,431 + Xcc-8004.3870.1 0.37 -2.0
3,737,431 + Xcc-8004.3870.1 0.37 -1.0
3,737,432 - Xcc-8004.3870.1 0.37 -1.6
3,738,005 - Xcc-8004.3870.1 0.72 -3.1
3,738,118 + Xcc-8004.3870.1 0.79 -1.6
3,738,119 - Xcc-8004.3870.1 0.79 -0.2
3,738,119 - Xcc-8004.3870.1 0.79 -1.9
3,738,119 - Xcc-8004.3870.1 0.79 +0.3
3,738,119 - Xcc-8004.3870.1 0.79 +1.6
3,738,173 - Xcc-8004.3870.1 0.82 -2.5
3,738,191 - Xcc-8004.3870.1 0.83 +0.8
3,738,191 - Xcc-8004.3870.1 0.83 -1.5
3,738,191 - Xcc-8004.3870.1 0.83 -1.8
3,738,191 - Xcc-8004.3870.1 0.83 -2.9
3,738,232 + Xcc-8004.3870.1 0.86 -1.9
3,738,232 + Xcc-8004.3870.1 0.86 -0.4
3,738,233 - Xcc-8004.3870.1 0.86 -2.9
3,738,233 - Xcc-8004.3870.1 0.86 -0.2
3,738,233 - Xcc-8004.3870.1 0.86 -1.7
3,738,364 + -2.2
3,738,364 + -2.8
3,738,365 - -2.2
3,738,365 - +0.1
3,738,427 + -2.1
3,738,427 + -0.5
3,738,428 - +0.8
3,738,428 - -0.8
3,738,428 - -0.2
3,738,428 - +0.6
3,738,428 - -1.8
3,738,483 - +2.4
3,738,528 - -0.1
3,738,554 - +0.7
3,738,631 + +0.5
3,738,632 - -1.5
3,738,746 + -1.5
3,738,747 - -2.4
3,738,797 + Xcc-8004.3871.1 0.10 +3.6
3,738,797 + Xcc-8004.3871.1 0.10 -2.1
3,738,797 + Xcc-8004.3871.1 0.10 -1.2
3,738,798 - Xcc-8004.3871.1 0.10 +0.1
3,738,798 - Xcc-8004.3871.1 0.10 -0.5
3,738,798 - Xcc-8004.3871.1 0.10 -2.0
3,738,888 - Xcc-8004.3871.1 0.15 -1.3
3,738,933 + Xcc-8004.3871.1 0.17 +1.4
3,738,934 - Xcc-8004.3871.1 0.17 +0.8
3,739,022 + Xcc-8004.3871.1 0.22 +0.4
3,739,116 - Xcc-8004.3871.1 0.26 +0.3
3,739,116 - Xcc-8004.3871.1 0.26 -1.5
3,739,178 + Xcc-8004.3871.1 0.29 +0.5
3,739,178 + Xcc-8004.3871.1 0.29 -0.0
3,739,179 - Xcc-8004.3871.1 0.29 -0.8
3,739,259 + Xcc-8004.3871.1 0.33 -1.1
3,739,325 + Xcc-8004.3871.1 0.37 -1.0
3,739,326 - Xcc-8004.3871.1 0.37 +0.7
3,739,326 - Xcc-8004.3871.1 0.37 +1.4
3,739,344 - Xcc-8004.3871.1 0.37 +1.0
3,739,370 + Xcc-8004.3871.1 0.39 -1.8

Or see this region's nucleotide sequence