Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3862.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3860.1 and Xcc-8004.3861.1 are separated by 156 nucleotidesXcc-8004.3861.1 and Xcc-8004.3862.1 are separated by 12 nucleotidesXcc-8004.3862.1 and Xcc-8004.3863.1 are separated by 36 nucleotidesXcc-8004.3863.1 and Xcc-8004.3864.1 are separated by 2 nucleotides Xcc-8004.3860.1: Xcc-8004.3860.1 - two-component system sensor protein, at 3,727,656 to 3,728,849 Xcc-8004.3860.1 Xcc-8004.3861.1: Xcc-8004.3861.1 - FIG01210504: hypothetical protein, at 3,729,006 to 3,729,602 Xcc-8004.3861.1 Xcc-8004.3862.1: Xcc-8004.3862.1 - Septum site-determining protein MinC, at 3,729,615 to 3,730,355 Xcc-8004.3862.1 Xcc-8004.3863.1: Xcc-8004.3863.1 - Septum site-determining protein MinD, at 3,730,392 to 3,731,201 Xcc-8004.3863.1 Xcc-8004.3864.1: Xcc-8004.3864.1 - Cell division topological specificity factor MinE, at 3,731,204 to 3,731,461 Xcc-8004.3864.1 Position (kb) 3729 3730 3731Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3728.630 kb on - strand, within Xcc-8004.3860.1at 3728.677 kb on + strand, within Xcc-8004.3860.1at 3728.677 kb on + strand, within Xcc-8004.3860.1at 3728.677 kb on + strand, within Xcc-8004.3860.1at 3728.677 kb on + strand, within Xcc-8004.3860.1at 3728.678 kb on - strand, within Xcc-8004.3860.1at 3728.678 kb on - strand, within Xcc-8004.3860.1at 3728.678 kb on - strand, within Xcc-8004.3860.1at 3728.678 kb on - strand, within Xcc-8004.3860.1at 3728.678 kb on - strand, within Xcc-8004.3860.1at 3728.678 kb on - strand, within Xcc-8004.3860.1at 3728.678 kb on - strand, within Xcc-8004.3860.1at 3728.678 kb on - strand, within Xcc-8004.3860.1at 3728.678 kb on - strand, within Xcc-8004.3860.1at 3728.764 kb on + strandat 3728.764 kb on + strandat 3728.764 kb on + strandat 3728.765 kb on - strandat 3728.765 kb on - strandat 3728.765 kb on - strandat 3728.765 kb on - strandat 3728.765 kb on - strandat 3728.765 kb on - strandat 3728.765 kb on - strandat 3728.765 kb on - strandat 3728.765 kb on - strandat 3728.765 kb on - strandat 3728.770 kb on + strandat 3728.770 kb on + strandat 3728.770 kb on + strandat 3728.771 kb on - strandat 3728.771 kb on - strandat 3728.771 kb on - strandat 3728.771 kb on - strandat 3728.771 kb on - strandat 3728.771 kb on - strandat 3728.771 kb on - strandat 3728.831 kb on + strandat 3728.831 kb on + strandat 3728.832 kb on - strandat 3728.832 kb on - strandat 3728.863 kb on + strandat 3728.863 kb on + strandat 3728.864 kb on - strandat 3728.864 kb on - strandat 3728.870 kb on - strandat 3728.950 kb on + strandat 3728.950 kb on + strandat 3728.950 kb on + strandat 3728.951 kb on - strandat 3728.951 kb on - strandat 3728.951 kb on - strandat 3728.951 kb on - strandat 3728.951 kb on - strandat 3728.951 kb on - strandat 3728.953 kb on + strandat 3729.135 kb on + strand, within Xcc-8004.3861.1at 3729.255 kb on + strand, within Xcc-8004.3861.1at 3729.255 kb on + strand, within Xcc-8004.3861.1at 3729.255 kb on + strand, within Xcc-8004.3861.1at 3729.255 kb on + strand, within Xcc-8004.3861.1at 3729.255 kb on + strand, within Xcc-8004.3861.1at 3729.256 kb on - strand, within Xcc-8004.3861.1at 3729.256 kb on - strand, within Xcc-8004.3861.1at 3729.315 kb on + strand, within Xcc-8004.3861.1at 3729.315 kb on + strand, within Xcc-8004.3861.1at 3729.333 kb on + strand, within Xcc-8004.3861.1at 3729.334 kb on - strand, within Xcc-8004.3861.1at 3729.498 kb on + strand, within Xcc-8004.3861.1at 3729.519 kb on + strand, within Xcc-8004.3861.1at 3729.519 kb on + strand, within Xcc-8004.3861.1at 3729.519 kb on + strand, within Xcc-8004.3861.1at 3729.519 kb on + strand, within Xcc-8004.3861.1at 3729.519 kb on + strand, within Xcc-8004.3861.1at 3729.519 kb on + strand, within Xcc-8004.3861.1at 3729.519 kb on + strand, within Xcc-8004.3861.1at 3729.520 kb on - strand, within Xcc-8004.3861.1at 3729.520 kb on - strand, within Xcc-8004.3861.1at 3729.520 kb on - strand, within Xcc-8004.3861.1at 3729.871 kb on - strand, within Xcc-8004.3862.1at 3729.871 kb on - strand, within Xcc-8004.3862.1at 3729.871 kb on - strand, within Xcc-8004.3862.1at 3730.099 kb on + strand, within Xcc-8004.3862.1at 3730.099 kb on + strand, within Xcc-8004.3862.1at 3730.107 kb on - strand, within Xcc-8004.3862.1at 3730.107 kb on - strand, within Xcc-8004.3862.1at 3730.107 kb on - strand, within Xcc-8004.3862.1at 3730.151 kb on + strand, within Xcc-8004.3862.1at 3730.151 kb on + strand, within Xcc-8004.3862.1at 3730.151 kb on + strand, within Xcc-8004.3862.1at 3730.152 kb on - strand, within Xcc-8004.3862.1at 3730.152 kb on - strand, within Xcc-8004.3862.1at 3730.152 kb on - strand, within Xcc-8004.3862.1at 3730.155 kb on + strand, within Xcc-8004.3862.1at 3730.155 kb on + strand, within Xcc-8004.3862.1at 3730.155 kb on + strand, within Xcc-8004.3862.1at 3730.155 kb on + strand, within Xcc-8004.3862.1at 3730.155 kb on + strand, within Xcc-8004.3862.1at 3730.156 kb on - strand, within Xcc-8004.3862.1at 3730.156 kb on - strand, within Xcc-8004.3862.1at 3730.156 kb on - strand, within Xcc-8004.3862.1at 3730.156 kb on - strand, within Xcc-8004.3862.1at 3730.156 kb on - strand, within Xcc-8004.3862.1at 3730.156 kb on - strand, within Xcc-8004.3862.1at 3730.260 kb on + strand, within Xcc-8004.3862.1at 3730.261 kb on - strand, within Xcc-8004.3862.1at 3730.376 kb on - strandat 3730.376 kb on - strandat 3730.408 kb on + strandat 3730.408 kb on + strandat 3730.409 kb on - strandat 3730.409 kb on - strandat 3730.564 kb on - strand, within Xcc-8004.3863.1at 3730.641 kb on + strand, within Xcc-8004.3863.1at 3730.642 kb on - strand, within Xcc-8004.3863.1at 3730.738 kb on - strand, within Xcc-8004.3863.1at 3730.791 kb on + strand, within Xcc-8004.3863.1at 3730.791 kb on + strand, within Xcc-8004.3863.1at 3730.791 kb on + strand, within Xcc-8004.3863.1at 3730.792 kb on - strand, within Xcc-8004.3863.1at 3730.792 kb on - strand, within Xcc-8004.3863.1at 3730.792 kb on - strand, within Xcc-8004.3863.1at 3730.792 kb on - strand, within Xcc-8004.3863.1at 3730.792 kb on - strand, within Xcc-8004.3863.1at 3730.936 kb on - strand, within Xcc-8004.3863.1at 3731.103 kb on + strand, within Xcc-8004.3863.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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3,728,630 - Xcc-8004.3860.1 0.82 -1.5
3,728,677 + Xcc-8004.3860.1 0.86 -1.5
3,728,677 + Xcc-8004.3860.1 0.86 -1.5
3,728,677 + Xcc-8004.3860.1 0.86 -2.8
3,728,677 + Xcc-8004.3860.1 0.86 -0.5
3,728,678 - Xcc-8004.3860.1 0.86 -0.7
3,728,678 - Xcc-8004.3860.1 0.86 -2.9
3,728,678 - Xcc-8004.3860.1 0.86 -0.4
3,728,678 - Xcc-8004.3860.1 0.86 +0.4
3,728,678 - Xcc-8004.3860.1 0.86 -1.0
3,728,678 - Xcc-8004.3860.1 0.86 -0.3
3,728,678 - Xcc-8004.3860.1 0.86 -1.8
3,728,678 - Xcc-8004.3860.1 0.86 +0.7
3,728,678 - Xcc-8004.3860.1 0.86 -0.8
3,728,764 + +0.8
3,728,764 + -0.2
3,728,764 + -0.5
3,728,765 - -2.2
3,728,765 - -1.8
3,728,765 - -1.8
3,728,765 - +1.4
3,728,765 - -1.0
3,728,765 - -1.2
3,728,765 - -0.0
3,728,765 - -0.6
3,728,765 - +0.1
3,728,765 - +3.3
3,728,770 + -1.2
3,728,770 + -1.2
3,728,770 + -1.7
3,728,771 - -1.0
3,728,771 - +0.2
3,728,771 - +0.9
3,728,771 - -0.2
3,728,771 - +0.3
3,728,771 - +0.9
3,728,771 - -0.7
3,728,831 + +0.8
3,728,831 + -2.5
3,728,832 - -0.2
3,728,832 - +2.4
3,728,863 + -2.0
3,728,863 + -1.0
3,728,864 - -0.2
3,728,864 - +0.6
3,728,870 - -3.4
3,728,950 + -1.0
3,728,950 + +0.5
3,728,950 + -1.4
3,728,951 - -1.9
3,728,951 - -1.2
3,728,951 - -0.4
3,728,951 - +0.8
3,728,951 - +0.5
3,728,951 - +0.2
3,728,953 + +0.5
3,729,135 + Xcc-8004.3861.1 0.22 -0.3
3,729,255 + Xcc-8004.3861.1 0.42 +0.1
3,729,255 + Xcc-8004.3861.1 0.42 -2.2
3,729,255 + Xcc-8004.3861.1 0.42 +0.0
3,729,255 + Xcc-8004.3861.1 0.42 +1.8
3,729,255 + Xcc-8004.3861.1 0.42 +3.0
3,729,256 - Xcc-8004.3861.1 0.42 -0.8
3,729,256 - Xcc-8004.3861.1 0.42 -2.4
3,729,315 + Xcc-8004.3861.1 0.52 +1.4
3,729,315 + Xcc-8004.3861.1 0.52 -0.8
3,729,333 + Xcc-8004.3861.1 0.55 -0.2
3,729,334 - Xcc-8004.3861.1 0.55 -2.0
3,729,498 + Xcc-8004.3861.1 0.82 +0.8
3,729,519 + Xcc-8004.3861.1 0.86 +0.2
3,729,519 + Xcc-8004.3861.1 0.86 -2.4
3,729,519 + Xcc-8004.3861.1 0.86 -3.6
3,729,519 + Xcc-8004.3861.1 0.86 -1.1
3,729,519 + Xcc-8004.3861.1 0.86 -2.7
3,729,519 + Xcc-8004.3861.1 0.86 +0.8
3,729,519 + Xcc-8004.3861.1 0.86 +0.8
3,729,520 - Xcc-8004.3861.1 0.86 -1.8
3,729,520 - Xcc-8004.3861.1 0.86 -1.2
3,729,520 - Xcc-8004.3861.1 0.86 -0.8
3,729,871 - Xcc-8004.3862.1 0.35 -2.7
3,729,871 - Xcc-8004.3862.1 0.35 -2.4
3,729,871 - Xcc-8004.3862.1 0.35 -0.2
3,730,099 + Xcc-8004.3862.1 0.65 +1.8
3,730,099 + Xcc-8004.3862.1 0.65 +0.2
3,730,107 - Xcc-8004.3862.1 0.66 +0.8
3,730,107 - Xcc-8004.3862.1 0.66 -2.5
3,730,107 - Xcc-8004.3862.1 0.66 -0.2
3,730,151 + Xcc-8004.3862.1 0.72 -2.5
3,730,151 + Xcc-8004.3862.1 0.72 -1.2
3,730,151 + Xcc-8004.3862.1 0.72 -0.5
3,730,152 - Xcc-8004.3862.1 0.72 -1.9
3,730,152 - Xcc-8004.3862.1 0.72 -1.9
3,730,152 - Xcc-8004.3862.1 0.72 -1.9
3,730,155 + Xcc-8004.3862.1 0.73 -1.2
3,730,155 + Xcc-8004.3862.1 0.73 -1.4
3,730,155 + Xcc-8004.3862.1 0.73 -0.8
3,730,155 + Xcc-8004.3862.1 0.73 -2.0
3,730,155 + Xcc-8004.3862.1 0.73 +0.5
3,730,156 - Xcc-8004.3862.1 0.73 +1.8
3,730,156 - Xcc-8004.3862.1 0.73 -1.2
3,730,156 - Xcc-8004.3862.1 0.73 +0.7
3,730,156 - Xcc-8004.3862.1 0.73 -0.8
3,730,156 - Xcc-8004.3862.1 0.73 -0.9
3,730,156 - Xcc-8004.3862.1 0.73 +0.8
3,730,260 + Xcc-8004.3862.1 0.87 -1.5
3,730,261 - Xcc-8004.3862.1 0.87 -1.8
3,730,376 - +2.1
3,730,376 - -1.4
3,730,408 + -1.3
3,730,408 + -2.2
3,730,409 - -2.5
3,730,409 - -0.8
3,730,564 - Xcc-8004.3863.1 0.21 -1.2
3,730,641 + Xcc-8004.3863.1 0.31 -2.5
3,730,642 - Xcc-8004.3863.1 0.31 -0.9
3,730,738 - Xcc-8004.3863.1 0.43 -2.5
3,730,791 + Xcc-8004.3863.1 0.49 -1.8
3,730,791 + Xcc-8004.3863.1 0.49 +0.8
3,730,791 + Xcc-8004.3863.1 0.49 -1.0
3,730,792 - Xcc-8004.3863.1 0.49 -2.5
3,730,792 - Xcc-8004.3863.1 0.49 -2.4
3,730,792 - Xcc-8004.3863.1 0.49 +1.1
3,730,792 - Xcc-8004.3863.1 0.49 -0.5
3,730,792 - Xcc-8004.3863.1 0.49 -1.0
3,730,936 - Xcc-8004.3863.1 0.67 -2.0
3,731,103 + Xcc-8004.3863.1 0.88 -2.4

Or see this region's nucleotide sequence