Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3853.1 and Xcc-8004.3854.1 are separated by 1 nucleotides Xcc-8004.3854.1 and Xcc-8004.3855.1 are separated by 63 nucleotides Xcc-8004.3855.1 and Xcc-8004.3857.1 are separated by 365 nucleotides Xcc-8004.3857.1 and Xcc-8004.3858.1 are separated by 7 nucleotides Xcc-8004.3858.1 and Xcc-8004.3859.1 are separated by 8 nucleotides
Xcc-8004.3853.1: Xcc-8004.3853.1 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 3,724,021 to 3,724,695
Xcc-8004.3853.1
Xcc-8004.3854.1: Xcc-8004.3854.1 - COG2363, at 3,724,697 to 3,725,101
Xcc-8004.3854.1
Xcc-8004.3855.1: Xcc-8004.3855.1 - FIG01209965: hypothetical protein, at 3,725,165 to 3,726,346
Xcc-8004.3855.1
Xcc-8004.3857.1: Xcc-8004.3857.1 - hypothetical protein, at 3,726,712 to 3,726,855
Xcc-8004.3857.1
Xcc-8004.3858.1: Xcc-8004.3858.1 - hypothetical protein, at 3,726,863 to 3,727,006
Xcc-8004.3858.1
Xcc-8004.3859.1: Xcc-8004.3859.1 - Two-component system regulatory protein, at 3,727,015 to 3,727,656
Xcc-8004.3859.1
Position (kb) 3725
3726
3727 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 3724.842 kb on + strand, within Xcc-8004.3854.1 at 3724.842 kb on + strand, within Xcc-8004.3854.1 at 3724.842 kb on + strand, within Xcc-8004.3854.1 at 3724.843 kb on - strand, within Xcc-8004.3854.1 at 3724.917 kb on + strand, within Xcc-8004.3854.1 at 3724.917 kb on + strand, within Xcc-8004.3854.1 at 3724.977 kb on + strand, within Xcc-8004.3854.1 at 3724.978 kb on - strand, within Xcc-8004.3854.1 at 3725.166 kb on + strand at 3725.166 kb on + strand at 3725.166 kb on + strand at 3725.181 kb on + strand at 3725.190 kb on + strand at 3725.190 kb on + strand at 3725.190 kb on + strand at 3725.190 kb on + strand at 3725.190 kb on + strand at 3725.191 kb on - strand at 3725.191 kb on - strand at 3725.191 kb on - strand at 3725.191 kb on - strand at 3725.191 kb on - strand at 3725.191 kb on - strand at 3725.194 kb on + strand at 3725.195 kb on - strand at 3725.195 kb on - strand at 3725.242 kb on - strand at 3725.242 kb on - strand at 3725.297 kb on - strand, within Xcc-8004.3855.1 at 3725.297 kb on - strand, within Xcc-8004.3855.1 at 3725.331 kb on + strand, within Xcc-8004.3855.1 at 3725.331 kb on + strand, within Xcc-8004.3855.1 at 3725.331 kb on + strand, within Xcc-8004.3855.1 at 3725.331 kb on + strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.332 kb on - strand, within Xcc-8004.3855.1 at 3725.370 kb on + strand, within Xcc-8004.3855.1 at 3725.562 kb on + strand, within Xcc-8004.3855.1 at 3725.562 kb on + strand, within Xcc-8004.3855.1 at 3725.562 kb on + strand, within Xcc-8004.3855.1 at 3725.562 kb on + strand, within Xcc-8004.3855.1 at 3725.563 kb on - strand, within Xcc-8004.3855.1 at 3725.563 kb on - strand, within Xcc-8004.3855.1 at 3725.563 kb on - strand, within Xcc-8004.3855.1 at 3725.790 kb on + strand, within Xcc-8004.3855.1 at 3725.790 kb on + strand, within Xcc-8004.3855.1 at 3725.910 kb on + strand, within Xcc-8004.3855.1 at 3725.910 kb on + strand, within Xcc-8004.3855.1 at 3725.911 kb on - strand, within Xcc-8004.3855.1 at 3725.911 kb on - strand, within Xcc-8004.3855.1 at 3725.911 kb on - strand, within Xcc-8004.3855.1 at 3725.922 kb on + strand, within Xcc-8004.3855.1 at 3725.923 kb on - strand, within Xcc-8004.3855.1 at 3725.923 kb on - strand, within Xcc-8004.3855.1 at 3725.923 kb on - strand, within Xcc-8004.3855.1 at 3726.079 kb on - strand, within Xcc-8004.3855.1 at 3726.096 kb on + strand, within Xcc-8004.3855.1 at 3726.096 kb on + strand, within Xcc-8004.3855.1 at 3726.097 kb on - strand, within Xcc-8004.3855.1 at 3726.097 kb on - strand, within Xcc-8004.3855.1 at 3726.097 kb on - strand, within Xcc-8004.3855.1 at 3726.097 kb on - strand, within Xcc-8004.3855.1 at 3726.405 kb on + strand at 3726.405 kb on + strand at 3726.405 kb on + strand at 3726.405 kb on + strand at 3726.405 kb on + strand at 3726.406 kb on - strand at 3726.601 kb on + strand at 3726.625 kb on + strand at 3726.625 kb on + strand at 3727.151 kb on + strand, within Xcc-8004.3859.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 3,724,842 + Xcc-8004.3854.1 0.36 -0.6 3,724,842 + Xcc-8004.3854.1 0.36 -0.6 3,724,842 + Xcc-8004.3854.1 0.36 +0.8 3,724,843 - Xcc-8004.3854.1 0.36 +0.1 3,724,917 + Xcc-8004.3854.1 0.54 +0.8 3,724,917 + Xcc-8004.3854.1 0.54 -1.8 3,724,977 + Xcc-8004.3854.1 0.69 -1.5 3,724,978 - Xcc-8004.3854.1 0.69 +1.3 3,725,166 + -0.6 3,725,166 + +0.4 3,725,166 + +0.3 3,725,181 + -4.8 3,725,190 + -1.4 3,725,190 + -2.5 3,725,190 + -1.8 3,725,190 + -3.1 3,725,190 + -1.2 3,725,191 - -4.0 3,725,191 - -2.9 3,725,191 - -1.5 3,725,191 - -2.2 3,725,191 - -3.9 3,725,191 - -1.8 3,725,194 + +0.8 3,725,195 - -2.5 3,725,195 - -4.9 3,725,242 - -0.5 3,725,242 - -1.5 3,725,297 - Xcc-8004.3855.1 0.11 -2.7 3,725,297 - Xcc-8004.3855.1 0.11 -3.9 3,725,331 + Xcc-8004.3855.1 0.14 -3.1 3,725,331 + Xcc-8004.3855.1 0.14 -1.0 3,725,331 + Xcc-8004.3855.1 0.14 -2.9 3,725,331 + Xcc-8004.3855.1 0.14 -1.5 3,725,332 - Xcc-8004.3855.1 0.14 -2.2 3,725,332 - Xcc-8004.3855.1 0.14 -1.5 3,725,332 - Xcc-8004.3855.1 0.14 -2.8 3,725,332 - Xcc-8004.3855.1 0.14 +0.8 3,725,332 - Xcc-8004.3855.1 0.14 -1.8 3,725,332 - Xcc-8004.3855.1 0.14 +0.1 3,725,370 + Xcc-8004.3855.1 0.17 -4.0 3,725,562 + Xcc-8004.3855.1 0.34 -1.8 3,725,562 + Xcc-8004.3855.1 0.34 -0.8 3,725,562 + Xcc-8004.3855.1 0.34 -4.3 3,725,562 + Xcc-8004.3855.1 0.34 -3.8 3,725,563 - Xcc-8004.3855.1 0.34 -0.9 3,725,563 - Xcc-8004.3855.1 0.34 -2.5 3,725,563 - Xcc-8004.3855.1 0.34 -1.5 3,725,790 + Xcc-8004.3855.1 0.53 -0.2 3,725,790 + Xcc-8004.3855.1 0.53 +0.8 3,725,910 + Xcc-8004.3855.1 0.63 -2.0 3,725,910 + Xcc-8004.3855.1 0.63 -1.2 3,725,911 - Xcc-8004.3855.1 0.63 -1.5 3,725,911 - Xcc-8004.3855.1 0.63 -2.9 3,725,911 - Xcc-8004.3855.1 0.63 -3.3 3,725,922 + Xcc-8004.3855.1 0.64 -3.7 3,725,923 - Xcc-8004.3855.1 0.64 -1.8 3,725,923 - Xcc-8004.3855.1 0.64 -0.8 3,725,923 - Xcc-8004.3855.1 0.64 -0.2 3,726,079 - Xcc-8004.3855.1 0.77 -0.1 3,726,096 + Xcc-8004.3855.1 0.79 -2.4 3,726,096 + Xcc-8004.3855.1 0.79 -1.8 3,726,097 - Xcc-8004.3855.1 0.79 -1.8 3,726,097 - Xcc-8004.3855.1 0.79 -2.5 3,726,097 - Xcc-8004.3855.1 0.79 -3.0 3,726,097 - Xcc-8004.3855.1 0.79 +0.8 3,726,405 + -1.0 3,726,405 + -2.2 3,726,405 + -3.5 3,726,405 + -2.7 3,726,405 + -0.8 3,726,406 - +0.5 3,726,601 + -1.8 3,726,625 + +3.4 3,726,625 + -0.4 3,727,151 + Xcc-8004.3859.1 0.21 -1.8
Or see this region's nucleotide sequence