Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3816.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3814.1 and Xcc-8004.3815.1 overlap by 1 nucleotidesXcc-8004.3815.1 and Xcc-8004.3816.1 are separated by 2 nucleotidesXcc-8004.3816.1 and Xcc-8004.3817.1 overlap by 11 nucleotides Xcc-8004.3814.1: Xcc-8004.3814.1 - Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-), at 3,690,968 to 3,691,303 Xcc-8004.3814.1 Xcc-8004.3815.1: Xcc-8004.3815.1 - Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-), at 3,691,303 to 3,691,932 Xcc-8004.3815.1 Xcc-8004.3816.1: Xcc-8004.3816.1 - Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-), at 3,691,935 to 3,693,935 Xcc-8004.3816.1 Xcc-8004.3817.1: Xcc-8004.3817.1 - Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-), at 3,693,925 to 3,694,974 Xcc-8004.3817.1 Position (kb) 3691 3692 3693 3694Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3691.104 kb on + strand, within Xcc-8004.3814.1at 3691.105 kb on - strand, within Xcc-8004.3814.1at 3691.105 kb on - strand, within Xcc-8004.3814.1at 3691.304 kb on + strandat 3691.323 kb on - strandat 3691.522 kb on - strand, within Xcc-8004.3815.1at 3691.680 kb on + strand, within Xcc-8004.3815.1at 3691.681 kb on - strand, within Xcc-8004.3815.1at 3691.779 kb on - strand, within Xcc-8004.3815.1at 3691.779 kb on - strand, within Xcc-8004.3815.1at 3691.823 kb on + strand, within Xcc-8004.3815.1at 3691.823 kb on + strand, within Xcc-8004.3815.1at 3692.030 kb on - strandat 3692.155 kb on + strand, within Xcc-8004.3816.1at 3692.287 kb on + strand, within Xcc-8004.3816.1at 3692.288 kb on - strand, within Xcc-8004.3816.1at 3692.383 kb on + strand, within Xcc-8004.3816.1at 3692.412 kb on - strand, within Xcc-8004.3816.1at 3692.449 kb on + strand, within Xcc-8004.3816.1at 3692.449 kb on + strand, within Xcc-8004.3816.1at 3692.450 kb on - strand, within Xcc-8004.3816.1at 3692.450 kb on - strand, within Xcc-8004.3816.1at 3692.479 kb on + strand, within Xcc-8004.3816.1at 3692.480 kb on - strand, within Xcc-8004.3816.1at 3692.480 kb on - strand, within Xcc-8004.3816.1at 3692.480 kb on - strand, within Xcc-8004.3816.1at 3692.521 kb on + strand, within Xcc-8004.3816.1at 3692.623 kb on + strand, within Xcc-8004.3816.1at 3692.623 kb on + strand, within Xcc-8004.3816.1at 3692.624 kb on - strand, within Xcc-8004.3816.1at 3692.624 kb on - strand, within Xcc-8004.3816.1at 3692.624 kb on - strand, within Xcc-8004.3816.1at 3692.673 kb on - strand, within Xcc-8004.3816.1at 3692.673 kb on - strand, within Xcc-8004.3816.1at 3692.983 kb on + strand, within Xcc-8004.3816.1at 3692.983 kb on + strand, within Xcc-8004.3816.1at 3692.984 kb on - strand, within Xcc-8004.3816.1at 3692.984 kb on - strand, within Xcc-8004.3816.1at 3693.022 kb on + strand, within Xcc-8004.3816.1at 3693.073 kb on + strand, within Xcc-8004.3816.1at 3693.112 kb on + strand, within Xcc-8004.3816.1at 3693.112 kb on + strand, within Xcc-8004.3816.1at 3693.112 kb on + strand, within Xcc-8004.3816.1at 3693.113 kb on - strand, within Xcc-8004.3816.1at 3693.113 kb on - strand, within Xcc-8004.3816.1at 3693.113 kb on - strand, within Xcc-8004.3816.1at 3693.113 kb on - strand, within Xcc-8004.3816.1at 3693.113 kb on - strand, within Xcc-8004.3816.1at 3693.113 kb on - strand, within Xcc-8004.3816.1at 3693.113 kb on - strand, within Xcc-8004.3816.1at 3693.367 kb on + strand, within Xcc-8004.3816.1at 3693.367 kb on + strand, within Xcc-8004.3816.1at 3693.368 kb on - strand, within Xcc-8004.3816.1at 3693.368 kb on - strand, within Xcc-8004.3816.1at 3693.368 kb on - strand, within Xcc-8004.3816.1at 3693.368 kb on - strand, within Xcc-8004.3816.1at 3693.370 kb on + strand, within Xcc-8004.3816.1at 3693.370 kb on + strand, within Xcc-8004.3816.1at 3693.394 kb on + strand, within Xcc-8004.3816.1at 3693.394 kb on + strand, within Xcc-8004.3816.1at 3693.395 kb on - strand, within Xcc-8004.3816.1at 3693.754 kb on + strandat 3693.754 kb on + strandat 3693.755 kb on - strandat 3693.808 kb on + strandat 3693.809 kb on - strandat 3693.809 kb on - strandat 3693.809 kb on - strandat 3693.809 kb on - strandat 3693.823 kb on + strandat 3693.824 kb on - strandat 3693.824 kb on - strandat 3693.901 kb on + strandat 3693.927 kb on - strandat 3693.927 kb on - strandat 3693.930 kb on + strandat 3693.930 kb on + strandat 3693.930 kb on + strandat 3693.930 kb on + strandat 3693.951 kb on + strandat 3693.952 kb on - strandat 3693.952 kb on - strandat 3693.952 kb on - strandat 3693.970 kb on + strandat 3693.971 kb on - strandat 3693.971 kb on - strandat 3693.971 kb on - strandat 3694.025 kb on + strandat 3694.025 kb on + strandat 3694.025 kb on + strandat 3694.026 kb on - strandat 3694.026 kb on - strandat 3694.026 kb on - strandat 3694.026 kb on - strandat 3694.026 kb on - strandat 3694.026 kb on - strandat 3694.026 kb on - strandat 3694.029 kb on + strandat 3694.070 kb on + strand, within Xcc-8004.3817.1at 3694.073 kb on + strand, within Xcc-8004.3817.1at 3694.073 kb on + strand, within Xcc-8004.3817.1at 3694.073 kb on + strand, within Xcc-8004.3817.1at 3694.073 kb on + strand, within Xcc-8004.3817.1at 3694.073 kb on + strand, within Xcc-8004.3817.1at 3694.073 kb on + strand, within Xcc-8004.3817.1at 3694.073 kb on + strand, within Xcc-8004.3817.1at 3694.074 kb on - strand, within Xcc-8004.3817.1at 3694.074 kb on - strand, within Xcc-8004.3817.1at 3694.074 kb on - strand, within Xcc-8004.3817.1at 3694.241 kb on + strand, within Xcc-8004.3817.1at 3694.242 kb on - strand, within Xcc-8004.3817.1at 3694.262 kb on + strand, within Xcc-8004.3817.1at 3694.319 kb on + strand, within Xcc-8004.3817.1at 3694.445 kb on + strand, within Xcc-8004.3817.1at 3694.664 kb on + strand, within Xcc-8004.3817.1at 3694.741 kb on + strand, within Xcc-8004.3817.1at 3694.741 kb on + strand, within Xcc-8004.3817.1at 3694.742 kb on - strand, within Xcc-8004.3817.1at 3694.742 kb on - strand, within Xcc-8004.3817.1at 3694.742 kb on - strand, within Xcc-8004.3817.1at 3694.742 kb on - strand, within Xcc-8004.3817.1at 3694.840 kb on + strand, within Xcc-8004.3817.1at 3694.840 kb on + strand, within Xcc-8004.3817.1at 3694.840 kb on + strand, within Xcc-8004.3817.1at 3694.841 kb on - strand, within Xcc-8004.3817.1at 3694.841 kb on - strand, within Xcc-8004.3817.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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3,691,104 + Xcc-8004.3814.1 0.40 +1.8
3,691,105 - Xcc-8004.3814.1 0.41 -2.2
3,691,105 - Xcc-8004.3814.1 0.41 -1.8
3,691,304 + +0.5
3,691,323 - -0.6
3,691,522 - Xcc-8004.3815.1 0.35 +0.1
3,691,680 + Xcc-8004.3815.1 0.60 -1.5
3,691,681 - Xcc-8004.3815.1 0.60 +0.5
3,691,779 - Xcc-8004.3815.1 0.76 -2.9
3,691,779 - Xcc-8004.3815.1 0.76 -0.2
3,691,823 + Xcc-8004.3815.1 0.83 +0.4
3,691,823 + Xcc-8004.3815.1 0.83 -0.2
3,692,030 - -0.0
3,692,155 + Xcc-8004.3816.1 0.11 -0.4
3,692,287 + Xcc-8004.3816.1 0.18 -2.1
3,692,288 - Xcc-8004.3816.1 0.18 -0.8
3,692,383 + Xcc-8004.3816.1 0.22 -1.2
3,692,412 - Xcc-8004.3816.1 0.24 -0.2
3,692,449 + Xcc-8004.3816.1 0.26 -2.7
3,692,449 + Xcc-8004.3816.1 0.26 -0.2
3,692,450 - Xcc-8004.3816.1 0.26 +0.8
3,692,450 - Xcc-8004.3816.1 0.26 +0.2
3,692,479 + Xcc-8004.3816.1 0.27 -1.5
3,692,480 - Xcc-8004.3816.1 0.27 -1.2
3,692,480 - Xcc-8004.3816.1 0.27 +1.8
3,692,480 - Xcc-8004.3816.1 0.27 -2.8
3,692,521 + Xcc-8004.3816.1 0.29 -1.8
3,692,623 + Xcc-8004.3816.1 0.34 -0.2
3,692,623 + Xcc-8004.3816.1 0.34 +0.8
3,692,624 - Xcc-8004.3816.1 0.34 +1.2
3,692,624 - Xcc-8004.3816.1 0.34 -2.5
3,692,624 - Xcc-8004.3816.1 0.34 -2.7
3,692,673 - Xcc-8004.3816.1 0.37 -1.2
3,692,673 - Xcc-8004.3816.1 0.37 -1.8
3,692,983 + Xcc-8004.3816.1 0.52 -1.3
3,692,983 + Xcc-8004.3816.1 0.52 +0.4
3,692,984 - Xcc-8004.3816.1 0.52 -1.5
3,692,984 - Xcc-8004.3816.1 0.52 -1.5
3,693,022 + Xcc-8004.3816.1 0.54 -0.2
3,693,073 + Xcc-8004.3816.1 0.57 -1.0
3,693,112 + Xcc-8004.3816.1 0.59 -2.0
3,693,112 + Xcc-8004.3816.1 0.59 +1.5
3,693,112 + Xcc-8004.3816.1 0.59 +0.3
3,693,113 - Xcc-8004.3816.1 0.59 -1.5
3,693,113 - Xcc-8004.3816.1 0.59 -0.2
3,693,113 - Xcc-8004.3816.1 0.59 -0.2
3,693,113 - Xcc-8004.3816.1 0.59 -0.8
3,693,113 - Xcc-8004.3816.1 0.59 -2.2
3,693,113 - Xcc-8004.3816.1 0.59 -1.8
3,693,113 - Xcc-8004.3816.1 0.59 -1.2
3,693,367 + Xcc-8004.3816.1 0.72 +1.8
3,693,367 + Xcc-8004.3816.1 0.72 -0.8
3,693,368 - Xcc-8004.3816.1 0.72 +0.4
3,693,368 - Xcc-8004.3816.1 0.72 -1.2
3,693,368 - Xcc-8004.3816.1 0.72 -0.8
3,693,368 - Xcc-8004.3816.1 0.72 -0.8
3,693,370 + Xcc-8004.3816.1 0.72 +1.4
3,693,370 + Xcc-8004.3816.1 0.72 +0.8
3,693,394 + Xcc-8004.3816.1 0.73 -1.2
3,693,394 + Xcc-8004.3816.1 0.73 -2.5
3,693,395 - Xcc-8004.3816.1 0.73 -2.2
3,693,754 + +2.5
3,693,754 + -0.2
3,693,755 - +0.8
3,693,808 + +0.8
3,693,809 - +0.1
3,693,809 - -2.4
3,693,809 - -2.3
3,693,809 - +0.8
3,693,823 + +2.8
3,693,824 - -2.0
3,693,824 - -0.8
3,693,901 + -2.0
3,693,927 - +0.8
3,693,927 - -0.2
3,693,930 + -0.2
3,693,930 + +1.8
3,693,930 + +0.8
3,693,930 + -1.7
3,693,951 + +1.5
3,693,952 - +2.7
3,693,952 - -0.5
3,693,952 - +1.2
3,693,970 + +0.1
3,693,971 - +1.3
3,693,971 - -1.1
3,693,971 - +2.8
3,694,025 + -1.1
3,694,025 + -1.8
3,694,025 + -2.4
3,694,026 - -0.9
3,694,026 - -1.2
3,694,026 - +0.1
3,694,026 - -1.2
3,694,026 - +0.6
3,694,026 - -1.3
3,694,026 - -0.9
3,694,029 + +0.2
3,694,070 + Xcc-8004.3817.1 0.14 -0.0
3,694,073 + Xcc-8004.3817.1 0.14 -0.8
3,694,073 + Xcc-8004.3817.1 0.14 -2.0
3,694,073 + Xcc-8004.3817.1 0.14 -1.1
3,694,073 + Xcc-8004.3817.1 0.14 -0.8
3,694,073 + Xcc-8004.3817.1 0.14 -1.8
3,694,073 + Xcc-8004.3817.1 0.14 -0.8
3,694,073 + Xcc-8004.3817.1 0.14 +0.8
3,694,074 - Xcc-8004.3817.1 0.14 +0.5
3,694,074 - Xcc-8004.3817.1 0.14 -1.4
3,694,074 - Xcc-8004.3817.1 0.14 -0.2
3,694,241 + Xcc-8004.3817.1 0.30 -1.5
3,694,242 - Xcc-8004.3817.1 0.30 +2.4
3,694,262 + Xcc-8004.3817.1 0.32 -0.0
3,694,319 + Xcc-8004.3817.1 0.38 -2.4
3,694,445 + Xcc-8004.3817.1 0.50 -1.3
3,694,664 + Xcc-8004.3817.1 0.70 -1.9
3,694,741 + Xcc-8004.3817.1 0.78 -0.5
3,694,741 + Xcc-8004.3817.1 0.78 +2.1
3,694,742 - Xcc-8004.3817.1 0.78 -2.1
3,694,742 - Xcc-8004.3817.1 0.78 +0.8
3,694,742 - Xcc-8004.3817.1 0.78 -0.8
3,694,742 - Xcc-8004.3817.1 0.78 -0.8
3,694,840 + Xcc-8004.3817.1 0.87 -1.2
3,694,840 + Xcc-8004.3817.1 0.87 -0.2
3,694,840 + Xcc-8004.3817.1 0.87 -2.0
3,694,841 - Xcc-8004.3817.1 0.87 -0.9
3,694,841 - Xcc-8004.3817.1 0.87 +0.8

Or see this region's nucleotide sequence