Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3414.1 and Xcc-8004.3415.1 are separated by 60 nucleotides Xcc-8004.3415.1 and Xcc-8004.3416.1 are separated by 220 nucleotides Xcc-8004.3416.1 and Xcc-8004.3417.1 overlap by 4 nucleotides
Xcc-8004.3414.1: Xcc-8004.3414.1 - Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4), at 3,305,013 to 3,306,449
Xcc-8004.3414.1
Xcc-8004.3415.1: Xcc-8004.3415.1 - Lysine decarboxylase family, at 3,306,510 to 3,307,196
Xcc-8004.3415.1
Xcc-8004.3416.1: Xcc-8004.3416.1 - FIG000605: protein co-occurring with transport systems (COG1739), at 3,307,417 to 3,308,010
Xcc-8004.3416.1
Xcc-8004.3417.1: Xcc-8004.3417.1 - ABC-type multidrug transport system, ATPase and permease components, at 3,308,007 to 3,309,773
Xcc-8004.3417.1
Position (kb) 3307
3308
3309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 3306.447 kb on + strand at 3306.447 kb on + strand at 3306.526 kb on + strand at 3306.526 kb on + strand at 3306.527 kb on - strand at 3306.527 kb on - strand at 3306.527 kb on - strand at 3306.566 kb on + strand at 3306.566 kb on + strand at 3306.567 kb on - strand at 3306.567 kb on - strand at 3306.567 kb on - strand at 3306.584 kb on + strand, within Xcc-8004.3415.1 at 3306.621 kb on + strand, within Xcc-8004.3415.1 at 3306.654 kb on + strand, within Xcc-8004.3415.1 at 3306.654 kb on + strand, within Xcc-8004.3415.1 at 3306.654 kb on + strand, within Xcc-8004.3415.1 at 3306.654 kb on + strand, within Xcc-8004.3415.1 at 3306.655 kb on - strand, within Xcc-8004.3415.1 at 3306.714 kb on + strand, within Xcc-8004.3415.1 at 3306.714 kb on + strand, within Xcc-8004.3415.1 at 3306.714 kb on + strand, within Xcc-8004.3415.1 at 3306.714 kb on + strand, within Xcc-8004.3415.1 at 3306.714 kb on + strand, within Xcc-8004.3415.1 at 3306.715 kb on - strand, within Xcc-8004.3415.1 at 3306.715 kb on - strand, within Xcc-8004.3415.1 at 3306.715 kb on - strand, within Xcc-8004.3415.1 at 3306.715 kb on - strand, within Xcc-8004.3415.1 at 3306.715 kb on - strand, within Xcc-8004.3415.1 at 3307.017 kb on + strand, within Xcc-8004.3415.1 at 3307.017 kb on + strand, within Xcc-8004.3415.1 at 3307.017 kb on + strand, within Xcc-8004.3415.1 at 3307.018 kb on - strand, within Xcc-8004.3415.1 at 3307.018 kb on - strand, within Xcc-8004.3415.1 at 3307.018 kb on - strand, within Xcc-8004.3415.1 at 3307.018 kb on - strand, within Xcc-8004.3415.1 at 3307.095 kb on + strand, within Xcc-8004.3415.1 at 3307.095 kb on + strand, within Xcc-8004.3415.1 at 3307.137 kb on + strand at 3307.137 kb on + strand at 3307.137 kb on + strand at 3307.138 kb on - strand at 3307.138 kb on - strand at 3307.138 kb on - strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.245 kb on + strand at 3307.246 kb on - strand at 3307.246 kb on - strand at 3307.246 kb on - strand at 3307.246 kb on - strand at 3307.248 kb on + strand at 3307.276 kb on - strand at 3307.276 kb on - strand at 3307.276 kb on - strand at 3307.276 kb on - strand at 3307.276 kb on - strand at 3307.283 kb on + strand at 3307.284 kb on - strand at 3307.284 kb on - strand at 3307.284 kb on - strand at 3307.284 kb on - strand at 3307.404 kb on + strand at 3307.404 kb on + strand at 3307.404 kb on + strand at 3307.404 kb on + strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.405 kb on - strand at 3307.570 kb on + strand, within Xcc-8004.3416.1 at 3307.571 kb on - strand, within Xcc-8004.3416.1 at 3307.588 kb on + strand, within Xcc-8004.3416.1 at 3307.589 kb on - strand, within Xcc-8004.3416.1 at 3307.640 kb on + strand, within Xcc-8004.3416.1 at 3307.640 kb on + strand, within Xcc-8004.3416.1 at 3307.640 kb on + strand, within Xcc-8004.3416.1 at 3307.640 kb on + strand, within Xcc-8004.3416.1 at 3307.641 kb on - strand, within Xcc-8004.3416.1 at 3307.641 kb on - strand, within Xcc-8004.3416.1 at 3307.641 kb on - strand, within Xcc-8004.3416.1 at 3307.641 kb on - strand, within Xcc-8004.3416.1 at 3307.663 kb on + strand, within Xcc-8004.3416.1 at 3307.697 kb on - strand, within Xcc-8004.3416.1 at 3308.271 kb on + strand, within Xcc-8004.3417.1 at 3308.271 kb on + strand, within Xcc-8004.3417.1 at 3308.272 kb on - strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.325 kb on + strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.326 kb on - strand, within Xcc-8004.3417.1 at 3308.395 kb on + strand, within Xcc-8004.3417.1 at 3308.644 kb on + strand, within Xcc-8004.3417.1 at 3308.645 kb on - strand, within Xcc-8004.3417.1 at 3308.740 kb on + strand, within Xcc-8004.3417.1 at 3308.741 kb on - strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.880 kb on + strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1 at 3308.881 kb on - strand, within Xcc-8004.3417.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 3,306,447 + -0.6 3,306,447 + +0.3 3,306,526 + -2.0 3,306,526 + +0.7 3,306,527 - -3.0 3,306,527 - -2.0 3,306,527 - -1.8 3,306,566 + +1.1 3,306,566 + +0.7 3,306,567 - +1.4 3,306,567 - +2.3 3,306,567 - +0.3 3,306,584 + Xcc-8004.3415.1 0.11 +2.3 3,306,621 + Xcc-8004.3415.1 0.16 -1.6 3,306,654 + Xcc-8004.3415.1 0.21 +1.2 3,306,654 + Xcc-8004.3415.1 0.21 -1.9 3,306,654 + Xcc-8004.3415.1 0.21 +1.0 3,306,654 + Xcc-8004.3415.1 0.21 +1.9 3,306,655 - Xcc-8004.3415.1 0.21 +0.7 3,306,714 + Xcc-8004.3415.1 0.30 +1.4 3,306,714 + Xcc-8004.3415.1 0.30 -0.0 3,306,714 + Xcc-8004.3415.1 0.30 +0.7 3,306,714 + Xcc-8004.3415.1 0.30 +0.1 3,306,714 + Xcc-8004.3415.1 0.30 -1.3 3,306,715 - Xcc-8004.3415.1 0.30 -1.9 3,306,715 - Xcc-8004.3415.1 0.30 +0.4 3,306,715 - Xcc-8004.3415.1 0.30 -0.3 3,306,715 - Xcc-8004.3415.1 0.30 -1.0 3,306,715 - Xcc-8004.3415.1 0.30 -0.3 3,307,017 + Xcc-8004.3415.1 0.74 -1.3 3,307,017 + Xcc-8004.3415.1 0.74 +1.9 3,307,017 + Xcc-8004.3415.1 0.74 -2.2 3,307,018 - Xcc-8004.3415.1 0.74 -0.6 3,307,018 - Xcc-8004.3415.1 0.74 -1.4 3,307,018 - Xcc-8004.3415.1 0.74 +0.4 3,307,018 - Xcc-8004.3415.1 0.74 -2.1 3,307,095 + Xcc-8004.3415.1 0.85 -0.9 3,307,095 + Xcc-8004.3415.1 0.85 +0.9 3,307,137 + -2.7 3,307,137 + +0.9 3,307,137 + +2.0 3,307,138 - +2.3 3,307,138 - -0.6 3,307,138 - -2.6 3,307,245 + +0.5 3,307,245 + -0.5 3,307,245 + +1.0 3,307,245 + +0.7 3,307,245 + +1.4 3,307,245 + -1.7 3,307,245 + -1.2 3,307,245 + -1.6 3,307,245 + +1.7 3,307,245 + +5.8 3,307,245 + -0.2 3,307,245 + -0.4 3,307,246 - -0.3 3,307,246 - +0.9 3,307,246 - -0.4 3,307,246 - -0.1 3,307,248 + +1.3 3,307,276 - -1.7 3,307,276 - +1.9 3,307,276 - -0.3 3,307,276 - +0.1 3,307,276 - +1.3 3,307,283 + +1.5 3,307,284 - -0.5 3,307,284 - -1.1 3,307,284 - +0.2 3,307,284 - -1.6 3,307,404 + -2.6 3,307,404 + +0.6 3,307,404 + +0.6 3,307,404 + +3.0 3,307,405 - -0.7 3,307,405 - -0.9 3,307,405 - -1.6 3,307,405 - +0.5 3,307,405 - -0.9 3,307,405 - +0.7 3,307,405 - +2.5 3,307,405 - -0.1 3,307,570 + Xcc-8004.3416.1 0.26 -2.0 3,307,571 - Xcc-8004.3416.1 0.26 +0.6 3,307,588 + Xcc-8004.3416.1 0.29 +1.5 3,307,589 - Xcc-8004.3416.1 0.29 -0.4 3,307,640 + Xcc-8004.3416.1 0.38 -0.9 3,307,640 + Xcc-8004.3416.1 0.38 +2.3 3,307,640 + Xcc-8004.3416.1 0.38 -1.9 3,307,640 + Xcc-8004.3416.1 0.38 +3.0 3,307,641 - Xcc-8004.3416.1 0.38 -0.3 3,307,641 - Xcc-8004.3416.1 0.38 -0.9 3,307,641 - Xcc-8004.3416.1 0.38 -2.4 3,307,641 - Xcc-8004.3416.1 0.38 +0.5 3,307,663 + Xcc-8004.3416.1 0.41 +0.8 3,307,697 - Xcc-8004.3416.1 0.47 -0.7 3,308,271 + Xcc-8004.3417.1 0.15 +1.7 3,308,271 + Xcc-8004.3417.1 0.15 -0.5 3,308,272 - Xcc-8004.3417.1 0.15 +1.0 3,308,325 + Xcc-8004.3417.1 0.18 -0.4 3,308,325 + Xcc-8004.3417.1 0.18 -0.7 3,308,325 + Xcc-8004.3417.1 0.18 +1.9 3,308,325 + Xcc-8004.3417.1 0.18 -0.4 3,308,325 + Xcc-8004.3417.1 0.18 +0.8 3,308,325 + Xcc-8004.3417.1 0.18 -1.3 3,308,325 + Xcc-8004.3417.1 0.18 -0.2 3,308,325 + Xcc-8004.3417.1 0.18 -0.1 3,308,325 + Xcc-8004.3417.1 0.18 -0.5 3,308,326 - Xcc-8004.3417.1 0.18 -0.1 3,308,326 - Xcc-8004.3417.1 0.18 +1.3 3,308,326 - Xcc-8004.3417.1 0.18 -1.1 3,308,326 - Xcc-8004.3417.1 0.18 -0.7 3,308,326 - Xcc-8004.3417.1 0.18 +1.1 3,308,326 - Xcc-8004.3417.1 0.18 +0.3 3,308,395 + Xcc-8004.3417.1 0.22 +1.3 3,308,644 + Xcc-8004.3417.1 0.36 +1.5 3,308,645 - Xcc-8004.3417.1 0.36 +0.2 3,308,740 + Xcc-8004.3417.1 0.41 +0.4 3,308,741 - Xcc-8004.3417.1 0.42 -1.3 3,308,880 + Xcc-8004.3417.1 0.49 -0.6 3,308,880 + Xcc-8004.3417.1 0.49 +0.9 3,308,880 + Xcc-8004.3417.1 0.49 +1.0 3,308,880 + Xcc-8004.3417.1 0.49 -0.5 3,308,880 + Xcc-8004.3417.1 0.49 -0.4 3,308,880 + Xcc-8004.3417.1 0.49 -1.4 3,308,880 + Xcc-8004.3417.1 0.49 +0.8 3,308,880 + Xcc-8004.3417.1 0.49 -0.5 3,308,880 + Xcc-8004.3417.1 0.49 -0.1 3,308,881 - Xcc-8004.3417.1 0.49 +0.7 3,308,881 - Xcc-8004.3417.1 0.49 -1.9 3,308,881 - Xcc-8004.3417.1 0.49 -3.6 3,308,881 - Xcc-8004.3417.1 0.49 +0.4 3,308,881 - Xcc-8004.3417.1 0.49 +0.7 3,308,881 - Xcc-8004.3417.1 0.49 -0.6 3,308,881 - Xcc-8004.3417.1 0.49 +0.8 3,308,881 - Xcc-8004.3417.1 0.49 +1.7 3,308,881 - Xcc-8004.3417.1 0.49 +1.4 3,308,881 - Xcc-8004.3417.1 0.49 +3.6 3,308,881 - Xcc-8004.3417.1 0.49 -3.2 3,308,881 - Xcc-8004.3417.1 0.49 -1.3 3,308,881 - Xcc-8004.3417.1 0.49 -1.1 3,308,881 - Xcc-8004.3417.1 0.49 +0.1
Or see this region's nucleotide sequence