Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3360.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3359.1 and Xcc-8004.3360.1 are separated by 177 nucleotidesXcc-8004.3360.1 and Xcc-8004.3361.1 are separated by 112 nucleotides Xcc-8004.3359.1: Xcc-8004.3359.1 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 3,252,468 to 3,253,559 Xcc-8004.3359.1 Xcc-8004.3360.1: Xcc-8004.3360.1 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 3,253,737 to 3,254,828 Xcc-8004.3360.1 Xcc-8004.3361.1: Xcc-8004.3361.1 - Phosphate transport system permease protein PstC (TC 3.A.1.7.1), at 3,254,941 to 3,255,915 Xcc-8004.3361.1 Position (kb) 3253 3254 3255Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3252.914 kb on + strand, within Xcc-8004.3359.1at 3252.914 kb on + strand, within Xcc-8004.3359.1at 3253.050 kb on + strand, within Xcc-8004.3359.1at 3253.050 kb on + strand, within Xcc-8004.3359.1at 3253.050 kb on + strand, within Xcc-8004.3359.1at 3253.050 kb on + strand, within Xcc-8004.3359.1at 3253.051 kb on - strand, within Xcc-8004.3359.1at 3253.155 kb on + strand, within Xcc-8004.3359.1at 3253.185 kb on + strand, within Xcc-8004.3359.1at 3253.224 kb on + strand, within Xcc-8004.3359.1at 3253.224 kb on + strand, within Xcc-8004.3359.1at 3253.224 kb on + strand, within Xcc-8004.3359.1at 3253.225 kb on - strand, within Xcc-8004.3359.1at 3253.326 kb on + strand, within Xcc-8004.3359.1at 3253.326 kb on + strand, within Xcc-8004.3359.1at 3253.326 kb on + strand, within Xcc-8004.3359.1at 3253.327 kb on - strand, within Xcc-8004.3359.1at 3253.327 kb on - strand, within Xcc-8004.3359.1at 3253.327 kb on - strand, within Xcc-8004.3359.1at 3253.327 kb on - strand, within Xcc-8004.3359.1at 3253.327 kb on - strand, within Xcc-8004.3359.1at 3253.455 kb on + strandat 3253.491 kb on + strandat 3253.491 kb on + strandat 3253.492 kb on - strandat 3253.492 kb on - strandat 3253.492 kb on - strandat 3253.492 kb on - strandat 3253.492 kb on - strandat 3253.492 kb on - strandat 3253.492 kb on - strandat 3253.534 kb on - strandat 3253.534 kb on - strandat 3253.534 kb on - strandat 3253.557 kb on + strandat 3253.672 kb on + strandat 3253.691 kb on + strandat 3253.691 kb on + strandat 3253.692 kb on - strandat 3253.692 kb on - strandat 3253.692 kb on - strandat 3253.917 kb on + strand, within Xcc-8004.3360.1at 3253.947 kb on + strand, within Xcc-8004.3360.1at 3253.948 kb on - strand, within Xcc-8004.3360.1at 3253.948 kb on - strand, within Xcc-8004.3360.1at 3253.978 kb on - strand, within Xcc-8004.3360.1at 3254.322 kb on + strand, within Xcc-8004.3360.1at 3254.323 kb on - strand, within Xcc-8004.3360.1at 3254.427 kb on + strand, within Xcc-8004.3360.1at 3254.427 kb on + strand, within Xcc-8004.3360.1at 3254.427 kb on + strand, within Xcc-8004.3360.1at 3254.427 kb on + strand, within Xcc-8004.3360.1at 3254.428 kb on - strand, within Xcc-8004.3360.1at 3254.457 kb on + strand, within Xcc-8004.3360.1at 3254.496 kb on + strand, within Xcc-8004.3360.1at 3254.763 kb on + strandat 3254.763 kb on + strandat 3254.764 kb on - strandat 3254.764 kb on - strandat 3254.764 kb on - strandat 3254.805 kb on + strandat 3254.898 kb on + strandat 3254.899 kb on - strandat 3255.169 kb on + strand, within Xcc-8004.3361.1at 3255.169 kb on + strand, within Xcc-8004.3361.1at 3255.170 kb on - strand, within Xcc-8004.3361.1at 3255.190 kb on + strand, within Xcc-8004.3361.1at 3255.343 kb on + strand, within Xcc-8004.3361.1at 3255.343 kb on + strand, within Xcc-8004.3361.1at 3255.344 kb on - strand, within Xcc-8004.3361.1at 3255.565 kb on - strand, within Xcc-8004.3361.1at 3255.628 kb on + strand, within Xcc-8004.3361.1at 3255.657 kb on - strand, within Xcc-8004.3361.1at 3255.805 kb on + strand, within Xcc-8004.3361.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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3,252,914 + Xcc-8004.3359.1 0.41 -0.1
3,252,914 + Xcc-8004.3359.1 0.41 -0.2
3,253,050 + Xcc-8004.3359.1 0.53 -0.0
3,253,050 + Xcc-8004.3359.1 0.53 -0.3
3,253,050 + Xcc-8004.3359.1 0.53 -0.4
3,253,050 + Xcc-8004.3359.1 0.53 -0.7
3,253,051 - Xcc-8004.3359.1 0.53 -0.2
3,253,155 + Xcc-8004.3359.1 0.63 +2.3
3,253,185 + Xcc-8004.3359.1 0.66 +3.7
3,253,224 + Xcc-8004.3359.1 0.69 -1.3
3,253,224 + Xcc-8004.3359.1 0.69 -1.9
3,253,224 + Xcc-8004.3359.1 0.69 +1.0
3,253,225 - Xcc-8004.3359.1 0.69 +1.5
3,253,326 + Xcc-8004.3359.1 0.79 +0.7
3,253,326 + Xcc-8004.3359.1 0.79 +0.1
3,253,326 + Xcc-8004.3359.1 0.79 +0.1
3,253,327 - Xcc-8004.3359.1 0.79 -1.3
3,253,327 - Xcc-8004.3359.1 0.79 -0.2
3,253,327 - Xcc-8004.3359.1 0.79 -2.5
3,253,327 - Xcc-8004.3359.1 0.79 +2.1
3,253,327 - Xcc-8004.3359.1 0.79 -0.8
3,253,455 + +0.0
3,253,491 + -0.0
3,253,491 + -0.3
3,253,492 - -2.7
3,253,492 - +0.3
3,253,492 - +0.1
3,253,492 - -1.2
3,253,492 - -1.6
3,253,492 - +1.3
3,253,492 - -1.3
3,253,534 - -0.4
3,253,534 - -0.9
3,253,534 - -0.9
3,253,557 + -0.1
3,253,672 + -0.6
3,253,691 + +0.1
3,253,691 + +0.5
3,253,692 - -1.7
3,253,692 - +0.7
3,253,692 - -1.3
3,253,917 + Xcc-8004.3360.1 0.16 -1.1
3,253,947 + Xcc-8004.3360.1 0.19 -2.2
3,253,948 - Xcc-8004.3360.1 0.19 -2.0
3,253,948 - Xcc-8004.3360.1 0.19 -3.5
3,253,978 - Xcc-8004.3360.1 0.22 -1.1
3,254,322 + Xcc-8004.3360.1 0.54 -2.1
3,254,323 - Xcc-8004.3360.1 0.54 -2.7
3,254,427 + Xcc-8004.3360.1 0.63 -2.4
3,254,427 + Xcc-8004.3360.1 0.63 -3.5
3,254,427 + Xcc-8004.3360.1 0.63 +0.5
3,254,427 + Xcc-8004.3360.1 0.63 -0.9
3,254,428 - Xcc-8004.3360.1 0.63 -1.2
3,254,457 + Xcc-8004.3360.1 0.66 -0.5
3,254,496 + Xcc-8004.3360.1 0.70 +0.0
3,254,763 + -1.4
3,254,763 + -1.6
3,254,764 - -1.9
3,254,764 - -0.9
3,254,764 - -2.6
3,254,805 + -0.3
3,254,898 + -0.7
3,254,899 - -1.6
3,255,169 + Xcc-8004.3361.1 0.23 -3.4
3,255,169 + Xcc-8004.3361.1 0.23 -3.8
3,255,170 - Xcc-8004.3361.1 0.23 -1.9
3,255,190 + Xcc-8004.3361.1 0.26 -2.0
3,255,343 + Xcc-8004.3361.1 0.41 -3.2
3,255,343 + Xcc-8004.3361.1 0.41 -1.4
3,255,344 - Xcc-8004.3361.1 0.41 -3.3
3,255,565 - Xcc-8004.3361.1 0.64 -2.1
3,255,628 + Xcc-8004.3361.1 0.70 -3.5
3,255,657 - Xcc-8004.3361.1 0.73 -1.4
3,255,805 + Xcc-8004.3361.1 0.89 -0.7

Or see this region's nucleotide sequence