Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.312.1 and Xcc-8004.314.1 are separated by 3 nucleotides Xcc-8004.314.1 and Xcc-8004.315.1 overlap by 61 nucleotides Xcc-8004.315.1 and Xcc-8004.316.1 are separated by 35 nucleotides
Xcc-8004.312.1: Xcc-8004.312.1 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 300,327 to 301,370
Xcc-8004.312.1
Xcc-8004.314.1: Xcc-8004.314.1 - Adenylate cyclase (EC 4.6.1.1), at 301,374 to 304,034
Xcc-8004.314.1
Xcc-8004.315.1: Xcc-8004.315.1 - FIG01211941: hypothetical protein, at 303,974 to 304,363
Xcc-8004.315.1
Xcc-8004.316.1: Xcc-8004.316.1 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase, at 304,399 to 305,595
Xcc-8004.316.1
Position (kb) 301
302
303
304
305 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 300.449 kb on + strand, within Xcc-8004.312.1 at 300.450 kb on - strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 301.008 kb on + strand, within Xcc-8004.312.1 at 301.008 kb on + strand, within Xcc-8004.312.1 at 301.009 kb on - strand, within Xcc-8004.312.1 at 301.266 kb on + strand at 301.266 kb on + strand at 301.266 kb on + strand at 301.266 kb on + strand at 301.266 kb on + strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.268 kb on + strand at 301.269 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.280 kb on + strand at 301.303 kb on - strand at 301.303 kb on - strand at 301.341 kb on + strand at 301.342 kb on - strand at 301.342 kb on - strand at 301.368 kb on + strand at 301.368 kb on + strand at 301.435 kb on + strand at 301.436 kb on - strand at 301.436 kb on - strand at 301.968 kb on + strand, within Xcc-8004.314.1 at 301.968 kb on + strand, within Xcc-8004.314.1 at 301.968 kb on + strand, within Xcc-8004.314.1 at 301.969 kb on - strand, within Xcc-8004.314.1 at 301.969 kb on - strand, within Xcc-8004.314.1 at 302.036 kb on + strand, within Xcc-8004.314.1 at 302.080 kb on + strand, within Xcc-8004.314.1 at 302.081 kb on - strand, within Xcc-8004.314.1 at 302.253 kb on + strand, within Xcc-8004.314.1 at 302.360 kb on - strand, within Xcc-8004.314.1 at 302.554 kb on + strand, within Xcc-8004.314.1 at 302.558 kb on - strand, within Xcc-8004.314.1 at 302.558 kb on - strand, within Xcc-8004.314.1 at 302.558 kb on - strand, within Xcc-8004.314.1 at 302.628 kb on + strand, within Xcc-8004.314.1 at 302.628 kb on + strand, within Xcc-8004.314.1 at 302.629 kb on - strand, within Xcc-8004.314.1 at 302.784 kb on + strand, within Xcc-8004.314.1 at 302.838 kb on + strand, within Xcc-8004.314.1 at 302.838 kb on + strand, within Xcc-8004.314.1 at 302.838 kb on + strand, within Xcc-8004.314.1 at 302.838 kb on + strand, within Xcc-8004.314.1 at 302.863 kb on + strand, within Xcc-8004.314.1 at 302.863 kb on + strand, within Xcc-8004.314.1 at 302.863 kb on + strand, within Xcc-8004.314.1 at 302.864 kb on - strand, within Xcc-8004.314.1 at 302.864 kb on - strand, within Xcc-8004.314.1 at 303.011 kb on - strand, within Xcc-8004.314.1 at 303.621 kb on - strand, within Xcc-8004.314.1 at 303.726 kb on + strand, within Xcc-8004.314.1 at 303.895 kb on - strand at 303.975 kb on + strand at 304.000 kb on + strand at 304.053 kb on + strand, within Xcc-8004.315.1 at 304.053 kb on + strand, within Xcc-8004.315.1 at 304.054 kb on - strand, within Xcc-8004.315.1 at 304.054 kb on - strand, within Xcc-8004.315.1 at 304.365 kb on - strand at 304.407 kb on - strand at 304.576 kb on - strand, within Xcc-8004.316.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 300,449 + Xcc-8004.312.1 0.12 -1.1 300,450 - Xcc-8004.312.1 0.12 -2.4 300,828 + Xcc-8004.312.1 0.48 -0.1 300,828 + Xcc-8004.312.1 0.48 -1.1 300,828 + Xcc-8004.312.1 0.48 +0.6 300,828 + Xcc-8004.312.1 0.48 -1.1 300,828 + Xcc-8004.312.1 0.48 -3.0 300,829 - Xcc-8004.312.1 0.48 -0.2 300,829 - Xcc-8004.312.1 0.48 -1.1 300,829 - Xcc-8004.312.1 0.48 -1.1 300,829 - Xcc-8004.312.1 0.48 -2.2 301,008 + Xcc-8004.312.1 0.65 -0.7 301,008 + Xcc-8004.312.1 0.65 -1.0 301,009 - Xcc-8004.312.1 0.65 -0.3 301,266 + -0.3 301,266 + -0.2 301,266 + -0.8 301,266 + -0.9 301,266 + +0.6 301,267 - -0.1 301,267 - +1.1 301,267 - +0.6 301,267 - -4.2 301,267 - +0.7 301,268 + +0.6 301,269 - -1.5 301,279 - +0.1 301,279 - -1.3 301,279 - -0.0 301,279 - +0.1 301,279 - +0.7 301,280 + +0.3 301,303 - +0.1 301,303 - +2.1 301,341 + -1.9 301,342 - -1.5 301,342 - -0.5 301,368 + -2.1 301,368 + -0.2 301,435 + -2.4 301,436 - -0.9 301,436 - -0.6 301,968 + Xcc-8004.314.1 0.22 +1.3 301,968 + Xcc-8004.314.1 0.22 +1.2 301,968 + Xcc-8004.314.1 0.22 -0.3 301,969 - Xcc-8004.314.1 0.22 -0.8 301,969 - Xcc-8004.314.1 0.22 +0.9 302,036 + Xcc-8004.314.1 0.25 +1.0 302,080 + Xcc-8004.314.1 0.27 +2.3 302,081 - Xcc-8004.314.1 0.27 +1.1 302,253 + Xcc-8004.314.1 0.33 -2.0 302,360 - Xcc-8004.314.1 0.37 +0.9 302,554 + Xcc-8004.314.1 0.44 -1.3 302,558 - Xcc-8004.314.1 0.44 -0.4 302,558 - Xcc-8004.314.1 0.44 +0.7 302,558 - Xcc-8004.314.1 0.44 +1.2 302,628 + Xcc-8004.314.1 0.47 +0.6 302,628 + Xcc-8004.314.1 0.47 -1.2 302,629 - Xcc-8004.314.1 0.47 +2.3 302,784 + Xcc-8004.314.1 0.53 +0.0 302,838 + Xcc-8004.314.1 0.55 +0.6 302,838 + Xcc-8004.314.1 0.55 -0.3 302,838 + Xcc-8004.314.1 0.55 +0.6 302,838 + Xcc-8004.314.1 0.55 +3.7 302,863 + Xcc-8004.314.1 0.56 -0.4 302,863 + Xcc-8004.314.1 0.56 -0.6 302,863 + Xcc-8004.314.1 0.56 +1.9 302,864 - Xcc-8004.314.1 0.56 -0.3 302,864 - Xcc-8004.314.1 0.56 +3.1 303,011 - Xcc-8004.314.1 0.62 +0.2 303,621 - Xcc-8004.314.1 0.84 +0.7 303,726 + Xcc-8004.314.1 0.88 +0.9 303,895 - -1.8 303,975 + +0.2 304,000 + +2.3 304,053 + Xcc-8004.315.1 0.20 +0.7 304,053 + Xcc-8004.315.1 0.20 -3.1 304,054 - Xcc-8004.315.1 0.21 +0.2 304,054 - Xcc-8004.315.1 0.21 -0.6 304,365 - -0.5 304,407 - -0.8 304,576 - Xcc-8004.316.1 0.15 +0.3
Or see this region's nucleotide sequence