Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2754.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
2,672,599	+		Xcc-8004.2752.1	0.87	+0.6
2,672,599	+		Xcc-8004.2752.1	0.87	-0.8
2,672,599	+		Xcc-8004.2752.1	0.87	-0.8
2,672,599	+		Xcc-8004.2752.1	0.87	+0.9
2,672,599	+		Xcc-8004.2752.1	0.87	-1.2
2,672,599	+		Xcc-8004.2752.1	0.87	+2.0
2,672,600	-		Xcc-8004.2752.1	0.87	-0.4
2,672,600	-		Xcc-8004.2752.1	0.87	-2.2
2,672,600	-		Xcc-8004.2752.1	0.87	-0.7
2,672,600	-		Xcc-8004.2752.1	0.87	-1.7
2,672,650	-				+0.4
2,672,650	-				-1.4
2,672,690	-				-0.4
2,672,690	-				-0.4
2,672,694	+				-0.1
2,672,993	+				+3.3
2,672,993	+				-0.9
2,672,993	+				-0.7
2,672,993	+				+1.6
2,672,993	+				-0.9
2,672,994	-				-0.6
2,672,994	-				+0.6
2,673,007	-				-0.5
2,673,057	-				-1.9
2,673,080	+				+0.9
2,673,080	+				-0.9
2,673,080	+				-1.4
2,673,080	+				+0.2
2,673,080	+				-1.7
2,673,080	+				-1.7
2,673,080	+				-2.2
2,673,080	+				-2.2
2,673,080	+				+2.0
2,673,081	-				-1.8
2,673,081	-				-1.5
2,673,081	-				-0.4
2,673,081	-				-0.8
2,673,081	-				-1.5
2,673,081	-				-0.2
2,673,081	-				+0.5
2,673,229	+				+4.4
2,673,229	+				-0.5
2,673,229	+				+3.2
2,673,229	+				-0.8
2,673,229	+				-1.9
2,673,229	+				+1.0
2,673,229	+				-1.4
2,673,229	+				+0.6
2,673,230	-				-1.7
2,673,247	+				+2.2
2,673,247	+				+0.6
2,673,247	+				-0.4
2,673,247	+				-2.5
2,673,247	+				+2.2
2,673,247	+				-1.0
2,673,248	-				-1.7
2,673,248	-				-0.1
2,673,248	-				-1.9
2,673,248	-				-1.9
2,673,302	+				-1.8
2,673,303	-				+0.4
2,673,381	+				-1.0
2,673,414	+				+0.1
2,673,415	-				+1.6
2,673,481	-				-1.7
2,673,768	+		Xcc-8004.2754.1	0.16	-2.2
2,673,819	+		Xcc-8004.2754.1	0.18	-1.4
2,673,820	-		Xcc-8004.2754.1	0.18	+0.6
2,673,913	-		Xcc-8004.2754.1	0.22	-2.2
2,674,058	+		Xcc-8004.2754.1	0.29	-0.4
2,674,058	+		Xcc-8004.2754.1	0.29	-2.5
2,674,059	-		Xcc-8004.2754.1	0.29	-0.9
2,674,059	-		Xcc-8004.2754.1	0.29	-1.7
2,674,059	-		Xcc-8004.2754.1	0.29	-2.2
2,674,106	+		Xcc-8004.2754.1	0.31	-2.2
2,674,106	+		Xcc-8004.2754.1	0.31	-2.5
2,674,106	+		Xcc-8004.2754.1	0.31	-0.2
2,674,107	-		Xcc-8004.2754.1	0.31	-1.7
2,674,107	-		Xcc-8004.2754.1	0.31	-2.9
2,674,107	-		Xcc-8004.2754.1	0.31	-1.9
2,674,107	-		Xcc-8004.2754.1	0.31	-1.9
2,674,137	+		Xcc-8004.2754.1	0.32	-3.4
2,674,559	+		Xcc-8004.2754.1	0.51	-0.4
2,674,559	+		Xcc-8004.2754.1	0.51	+1.1
2,674,560	-		Xcc-8004.2754.1	0.51	+0.2
2,674,560	-		Xcc-8004.2754.1	0.51	-0.5
2,674,560	-		Xcc-8004.2754.1	0.51	-1.4
2,674,560	-		Xcc-8004.2754.1	0.51	-2.5
2,674,560	-		Xcc-8004.2754.1	0.51	-2.2
2,674,560	-		Xcc-8004.2754.1	0.51	-1.6
2,674,583	+		Xcc-8004.2754.1	0.52	+0.6
2,674,583	+		Xcc-8004.2754.1	0.52	-1.8
2,674,583	+		Xcc-8004.2754.1	0.52	-1.3
2,674,584	-		Xcc-8004.2754.1	0.52	-2.1
2,674,807	-		Xcc-8004.2754.1	0.61	-0.9
2,674,807	-		Xcc-8004.2754.1	0.61	-2.7
2,674,807	-		Xcc-8004.2754.1	0.61	-2.0
2,674,807	-		Xcc-8004.2754.1	0.61	-1.2
2,674,807	-		Xcc-8004.2754.1	0.61	-0.4
2,675,042	+		Xcc-8004.2754.1	0.72	-0.8
2,675,042	+		Xcc-8004.2754.1	0.72	-0.6
2,675,042	+		Xcc-8004.2754.1	0.72	-2.2
2,675,042	+		Xcc-8004.2754.1	0.72	+2.0
2,675,042	+		Xcc-8004.2754.1	0.72	-0.4
2,675,043	-		Xcc-8004.2754.1	0.72	-3.3
2,675,043	-		Xcc-8004.2754.1	0.72	-1.1
2,675,043	-		Xcc-8004.2754.1	0.72	+2.0
2,675,043	-		Xcc-8004.2754.1	0.72	+0.1
2,675,043	-		Xcc-8004.2754.1	0.72	-1.9
2,675,043	-		Xcc-8004.2754.1	0.72	-1.3
2,675,043	-		Xcc-8004.2754.1	0.72	-0.2
2,675,043	-		Xcc-8004.2754.1	0.72	-0.4
2,675,043	-		Xcc-8004.2754.1	0.72	-0.2
2,675,162	+		Xcc-8004.2754.1	0.77	-3.6
2,675,279	+		Xcc-8004.2754.1	0.82	-2.8
2,675,279	+		Xcc-8004.2754.1	0.82	-0.9
2,675,279	+		Xcc-8004.2754.1	0.82	-3.1
2,675,279	+		Xcc-8004.2754.1	0.82	-1.6
2,675,279	+		Xcc-8004.2754.1	0.82	-1.2
2,675,280	-		Xcc-8004.2754.1	0.82	+1.1
2,675,280	-		Xcc-8004.2754.1	0.82	-1.7
2,675,280	-		Xcc-8004.2754.1	0.82	-0.1
2,675,324	+		Xcc-8004.2754.1	0.84	-1.7
2,675,324	+		Xcc-8004.2754.1	0.84	-0.9
2,675,325	-		Xcc-8004.2754.1	0.84	-0.1
2,675,325	-		Xcc-8004.2754.1	0.84	-2.9
2,675,325	-		Xcc-8004.2754.1	0.84	-1.5
2,675,411	+		Xcc-8004.2754.1	0.88	-2.3
2,675,411	+		Xcc-8004.2754.1	0.88	-0.7
2,675,411	+		Xcc-8004.2754.1	0.88	-2.4
2,675,411	+		Xcc-8004.2754.1	0.88	-0.5
2,675,645	+				+0.7
2,675,645	+				-2.3
2,675,645	+				-2.8
2,675,645	+				-1.1
2,675,645	+				-1.2
2,675,645	+				-2.5
2,675,646	-				-2.2
2,675,646	-				+0.9
2,675,668	+				-1.0
2,675,668	+				-1.5
2,675,668	+				-2.8
2,675,668	+				-1.7
2,675,669	-				-2.2
2,675,669	-				-4.4
2,675,669	-				-1.2
2,675,689	+				-1.9
2,675,690	-				+0.7
2,675,690	-				-0.5
2,675,690	-				-0.9
2,675,690	-				+0.7
2,675,690	-				+1.8
2,675,715	+				+0.2
2,675,716	-				+1.0
2,675,716	-				+0.3
2,675,716	-				+0.5
2,675,716	-				-0.2
2,675,716	-				-0.2
2,675,747	+				+0.8
2,675,747	+				-2.9
2,675,754	+				-1.3
2,675,754	+				-0.8
2,675,775	-				+0.3
2,675,775	-				+0.9
2,675,923	+		Xcc-8004.2755.1	0.18	-0.6
2,675,923	+		Xcc-8004.2755.1	0.18	-0.1
2,675,923	+		Xcc-8004.2755.1	0.18	-3.3
2,675,924	-		Xcc-8004.2755.1	0.19	+0.7
2,675,951	+		Xcc-8004.2755.1	0.24	+1.1
2,675,951	+		Xcc-8004.2755.1	0.24	-1.2
2,675,952	-		Xcc-8004.2755.1	0.24	+0.0
2,676,040	+		Xcc-8004.2755.1	0.41	-0.5
2,676,040	+		Xcc-8004.2755.1	0.41	-0.9
2,676,040	+		Xcc-8004.2755.1	0.41	-1.9
2,676,040	+		Xcc-8004.2755.1	0.41	-0.7
2,676,040	+		Xcc-8004.2755.1	0.41	-0.3
2,676,040	+		Xcc-8004.2755.1	0.41	+0.5
2,676,040	+		Xcc-8004.2755.1	0.41	-0.3
2,676,040	+		Xcc-8004.2755.1	0.41	+1.0
2,676,040	+		Xcc-8004.2755.1	0.41	-1.7
2,676,040	+		Xcc-8004.2755.1	0.41	-1.8
2,676,040	+		Xcc-8004.2755.1	0.41	+0.7
2,676,041	-		Xcc-8004.2755.1	0.42	-0.7
2,676,041	-		Xcc-8004.2755.1	0.42	+0.1
2,676,041	-		Xcc-8004.2755.1	0.42	+0.1
2,676,041	-		Xcc-8004.2755.1	0.42	+0.8
2,676,041	-		Xcc-8004.2755.1	0.42	+4.4
2,676,041	-		Xcc-8004.2755.1	0.42	-0.4
2,676,041	-		Xcc-8004.2755.1	0.42	-3.5
2,676,041	-		Xcc-8004.2755.1	0.42	-3.0
2,676,067	+		Xcc-8004.2755.1	0.47	-1.2
2,676,111	+		Xcc-8004.2755.1	0.55	-1.9
2,676,111	+		Xcc-8004.2755.1	0.55	+0.7
2,676,111	+		Xcc-8004.2755.1	0.55	+0.7
2,676,111	+		Xcc-8004.2755.1	0.55	+0.1
2,676,112	-		Xcc-8004.2755.1	0.55	+3.5
2,676,112	-		Xcc-8004.2755.1	0.55	-0.3
2,676,112	-		Xcc-8004.2755.1	0.55	-1.2
2,676,112	-		Xcc-8004.2755.1	0.55	+1.9
2,676,112	-		Xcc-8004.2755.1	0.55	-0.9
2,676,140	+		Xcc-8004.2755.1	0.61	-1.3
2,676,140	+		Xcc-8004.2755.1	0.61	+1.8
2,676,141	-		Xcc-8004.2755.1	0.61	+0.7
2,676,141	-		Xcc-8004.2755.1	0.61	+2.5
2,676,141	-		Xcc-8004.2755.1	0.61	+0.9
2,676,141	-		Xcc-8004.2755.1	0.61	-0.4
2,676,141	-		Xcc-8004.2755.1	0.61	-0.9
2,676,141	-		Xcc-8004.2755.1	0.61	+0.1
2,676,141	-		Xcc-8004.2755.1	0.61	+2.3
2,676,158	+		Xcc-8004.2755.1	0.65	-1.0
2,676,158	+		Xcc-8004.2755.1	0.65	-0.2
2,676,158	+		Xcc-8004.2755.1	0.65	+2.1
2,676,158	+		Xcc-8004.2755.1	0.65	-0.3
2,676,158	+		Xcc-8004.2755.1	0.65	+0.1
2,676,158	+		Xcc-8004.2755.1	0.65	-0.2
2,676,159	-		Xcc-8004.2755.1	0.65	+0.5
2,676,159	-		Xcc-8004.2755.1	0.65	+0.1
2,676,159	-		Xcc-8004.2755.1	0.65	+3.9
2,676,159	-		Xcc-8004.2755.1	0.65	-0.9
2,676,160	+		Xcc-8004.2755.1	0.65	-1.2
2,676,160	+		Xcc-8004.2755.1	0.65	+2.0
2,676,160	+		Xcc-8004.2755.1	0.65	-0.3
2,676,160	+		Xcc-8004.2755.1	0.65	-1.2
2,676,160	+		Xcc-8004.2755.1	0.65	-1.2
2,676,160	+		Xcc-8004.2755.1	0.65	+0.2
2,676,160	+		Xcc-8004.2755.1	0.65	-0.7
2,676,160	+		Xcc-8004.2755.1	0.65	-0.8
2,676,160	+		Xcc-8004.2755.1	0.65	-0.8
2,676,161	-		Xcc-8004.2755.1	0.65	-1.1
2,676,161	-		Xcc-8004.2755.1	0.65	+1.5
2,676,161	-		Xcc-8004.2755.1	0.65	-3.3
2,676,161	-		Xcc-8004.2755.1	0.65	+0.3
2,676,161	-		Xcc-8004.2755.1	0.65	-3.0
2,676,161	-		Xcc-8004.2755.1	0.65	-0.3
2,676,161	-		Xcc-8004.2755.1	0.65	-0.9
2,676,161	-		Xcc-8004.2755.1	0.65	-1.1
2,676,161	-		Xcc-8004.2755.1	0.65	-1.3
2,676,161	-		Xcc-8004.2755.1	0.65	-0.2
2,676,161	-		Xcc-8004.2755.1	0.65	+1.5
2,676,161	-		Xcc-8004.2755.1	0.65	-0.9
2,676,212	+		Xcc-8004.2755.1	0.75	+0.6
2,676,212	+		Xcc-8004.2755.1	0.75	-0.7
2,676,212	+		Xcc-8004.2755.1	0.75	-0.9
2,676,212	+		Xcc-8004.2755.1	0.75	-1.0
2,676,212	+		Xcc-8004.2755.1	0.75	+0.7
2,676,212	+		Xcc-8004.2755.1	0.75	-0.1
2,676,212	+		Xcc-8004.2755.1	0.75	-0.5
2,676,212	+		Xcc-8004.2755.1	0.75	-0.9
2,676,212	+		Xcc-8004.2755.1	0.75	-2.3
2,676,212	+		Xcc-8004.2755.1	0.75	-0.3
2,676,213	-		Xcc-8004.2755.1	0.75	+3.5
2,676,213	-		Xcc-8004.2755.1	0.75	+0.2
2,676,213	-		Xcc-8004.2755.1	0.75	-0.6
2,676,291	-				-0.0
2,676,354	+				-0.1
2,676,354	+				+1.3
2,676,354	+				+0.7
2,676,354	+				-0.2
2,676,354	+				+1.0
2,676,355	-				+0.7
2,676,355	-				+1.2
2,676,355	-				-1.3
2,676,664	+		Xcc-8004.2757.1	0.48	-0.1
2,676,664	+		Xcc-8004.2757.1	0.48	-0.3
2,676,664	+		Xcc-8004.2757.1	0.48	-1.8
2,676,664	+		Xcc-8004.2757.1	0.48	+0.5
2,676,664	+		Xcc-8004.2757.1	0.48	-0.2
2,676,664	+		Xcc-8004.2757.1	0.48	-0.9
2,676,664	+		Xcc-8004.2757.1	0.48	+1.4
2,676,664	+		Xcc-8004.2757.1	0.48	+0.9
2,676,664	+		Xcc-8004.2757.1	0.48	-2.2
2,676,664	+		Xcc-8004.2757.1	0.48	+1.1
2,676,664	+		Xcc-8004.2757.1	0.48	+2.2
2,676,665	-		Xcc-8004.2757.1	0.49	+2.1
2,676,665	-		Xcc-8004.2757.1	0.49	-0.7
2,676,665	-		Xcc-8004.2757.1	0.49	+0.1
2,676,665	-		Xcc-8004.2757.1	0.49	-0.1
2,676,665	-		Xcc-8004.2757.1	0.49	-3.3
2,676,665	-		Xcc-8004.2757.1	0.49	-0.9
2,676,665	-		Xcc-8004.2757.1	0.49	+0.3
2,676,665	-		Xcc-8004.2757.1	0.49	-0.3
2,676,665	-		Xcc-8004.2757.1	0.49	-0.0
2,676,665	-		Xcc-8004.2757.1	0.49	-1.7
2,676,665	-		Xcc-8004.2757.1	0.49	-0.1
2,676,665	-		Xcc-8004.2757.1	0.49	+1.2