Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2743.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
2,656,252	+		Xcc-8004.2741.1	0.63	+0.6
2,656,319	+		Xcc-8004.2741.1	0.68	-1.2
2,656,319	+		Xcc-8004.2741.1	0.68	-0.2
2,656,319	+		Xcc-8004.2741.1	0.68	-1.9
2,656,320	-		Xcc-8004.2741.1	0.68	+1.3
2,656,320	-		Xcc-8004.2741.1	0.68	+0.6
2,656,634	+				-0.4
2,656,634	+				-1.3
2,656,634	+				+0.2
2,656,634	+				-1.5
2,656,634	+				-0.6
2,656,634	+				-2.2
2,656,634	+				-1.1
2,656,634	+				-0.9
2,656,634	+				-0.8
2,656,635	-				+2.0
2,656,635	-				-0.6
2,656,635	-				+1.3
2,656,635	-				-0.7
2,656,697	+				-0.5
2,656,698	-				-0.6
2,656,711	-				+0.9
2,656,711	-				-0.6
2,656,711	-				-0.4
2,656,824	+				-0.1
2,656,824	+				-1.2
2,656,824	+				-2.8
2,656,824	+				+2.6
2,656,824	+				+0.6
2,656,824	+				+2.2
2,656,825	-				+3.2
2,656,825	-				+0.2
2,656,825	-				-0.0
2,656,825	-				+0.4
2,656,825	-				-0.7
2,656,825	-				-2.5
2,656,825	-				-1.8
2,656,866	+				+0.2
2,656,866	+				-1.7
2,656,866	+				+0.4
2,656,867	-				-0.5
2,656,867	-				-2.5
2,656,904	+				-0.3
2,656,904	+				-1.5
2,656,904	+				+1.8
2,656,905	-				-2.2
2,656,905	-				-0.4
2,656,905	-				+0.6
2,656,905	-				-1.9
2,656,917	-				-1.3
2,656,917	-				-2.5
2,656,927	-				-0.4
2,656,939	+				+2.2
2,656,939	+				-2.0
2,656,939	+				+1.3
2,656,940	-				+0.6
2,656,940	-				+0.4
2,656,940	-				+0.8
2,656,940	-				+1.3
2,656,968	+				+2.2
2,656,968	+				+0.1
2,656,968	+				-0.7
2,656,968	+				+1.2
2,656,968	+				-3.5
2,656,968	+				-0.2
2,656,968	+				-0.4
2,656,968	+				+0.1
2,656,968	+				-0.5
2,656,969	-				-1.2
2,656,969	-				+1.6
2,656,969	-				-1.3
2,656,969	-				-3.5
2,656,969	-				+0.6
2,656,969	-				-1.2
2,656,969	-				-0.9
2,657,057	+				+0.4
2,657,058	-				-3.7
2,657,073	+				+0.6
2,657,073	+				-1.4
2,657,074	-				-1.7
2,657,193	+		Xcc-8004.2743.1	0.16	-3.6
2,657,194	-		Xcc-8004.2743.1	0.16	-0.5
2,657,237	+		Xcc-8004.2743.1	0.19	-4.1
2,657,237	+		Xcc-8004.2743.1	0.19	-2.4
2,657,237	+		Xcc-8004.2743.1	0.19	-1.0
2,657,237	+		Xcc-8004.2743.1	0.19	-2.4
2,657,237	+		Xcc-8004.2743.1	0.19	+1.6
2,657,237	+		Xcc-8004.2743.1	0.19	+0.6
2,657,238	-		Xcc-8004.2743.1	0.19	-2.3
2,657,238	-		Xcc-8004.2743.1	0.19	-1.4
2,657,238	-		Xcc-8004.2743.1	0.19	-0.9
2,657,238	-		Xcc-8004.2743.1	0.19	-1.9
2,657,238	-		Xcc-8004.2743.1	0.19	-0.4
2,657,639	-		Xcc-8004.2743.1	0.48	-1.9
2,657,639	-		Xcc-8004.2743.1	0.48	-0.2
2,657,639	-		Xcc-8004.2743.1	0.48	-4.5
2,657,654	+		Xcc-8004.2743.1	0.49	-4.2
2,657,654	+		Xcc-8004.2743.1	0.49	-3.2
2,657,654	+		Xcc-8004.2743.1	0.49	-2.3
2,657,654	+		Xcc-8004.2743.1	0.49	+0.3
2,657,654	+		Xcc-8004.2743.1	0.49	-2.8
2,657,654	+		Xcc-8004.2743.1	0.49	+1.6
2,657,654	+		Xcc-8004.2743.1	0.49	+1.1
2,657,655	-		Xcc-8004.2743.1	0.49	-2.7
2,657,655	-		Xcc-8004.2743.1	0.49	-3.7
2,657,655	-		Xcc-8004.2743.1	0.49	-2.9
2,657,655	-		Xcc-8004.2743.1	0.49	-1.7
2,657,655	-		Xcc-8004.2743.1	0.49	-1.1
2,657,655	-		Xcc-8004.2743.1	0.49	-0.4
2,657,670	+		Xcc-8004.2743.1	0.50	-2.1
2,657,670	+		Xcc-8004.2743.1	0.50	-0.2
2,657,670	+		Xcc-8004.2743.1	0.50	-3.1
2,657,671	-		Xcc-8004.2743.1	0.50	-2.7
2,657,671	-		Xcc-8004.2743.1	0.50	-3.1
2,657,671	-		Xcc-8004.2743.1	0.50	-1.2
2,657,671	-		Xcc-8004.2743.1	0.50	-0.4
2,657,671	-		Xcc-8004.2743.1	0.50	-1.2
2,657,694	+		Xcc-8004.2743.1	0.52	-1.5
2,657,694	+		Xcc-8004.2743.1	0.52	-3.2
2,657,694	+		Xcc-8004.2743.1	0.52	-1.9
2,657,694	+		Xcc-8004.2743.1	0.52	+2.0
2,657,694	+		Xcc-8004.2743.1	0.52	-1.8
2,657,694	+		Xcc-8004.2743.1	0.52	-3.1
2,657,694	+		Xcc-8004.2743.1	0.52	-0.1
2,657,695	-		Xcc-8004.2743.1	0.52	-2.2
2,657,695	-		Xcc-8004.2743.1	0.52	+0.3
2,657,695	-		Xcc-8004.2743.1	0.52	-2.4
2,657,695	-		Xcc-8004.2743.1	0.52	-1.9
2,657,695	-		Xcc-8004.2743.1	0.52	-0.4
2,657,695	-		Xcc-8004.2743.1	0.52	-2.8
2,657,695	-		Xcc-8004.2743.1	0.52	-2.9
2,657,695	-		Xcc-8004.2743.1	0.52	-0.9
2,657,695	-		Xcc-8004.2743.1	0.52	-1.4
2,657,796	-		Xcc-8004.2743.1	0.60	-1.4
2,657,796	-		Xcc-8004.2743.1	0.60	-0.5
2,657,867	+		Xcc-8004.2743.1	0.65	-0.1
2,657,867	+		Xcc-8004.2743.1	0.65	-2.7
2,657,867	+		Xcc-8004.2743.1	0.65	-2.2
2,657,867	+		Xcc-8004.2743.1	0.65	-2.2
2,657,867	+		Xcc-8004.2743.1	0.65	-1.2
2,657,867	+		Xcc-8004.2743.1	0.65	-1.4
2,657,867	+		Xcc-8004.2743.1	0.65	-1.4
2,657,868	-		Xcc-8004.2743.1	0.65	-3.5
2,657,868	-		Xcc-8004.2743.1	0.65	-0.2
2,657,868	-		Xcc-8004.2743.1	0.65	-3.7
2,657,868	-		Xcc-8004.2743.1	0.65	-1.5
2,657,868	-		Xcc-8004.2743.1	0.65	-3.2
2,658,005	+		Xcc-8004.2743.1	0.75	-2.7
2,658,005	+		Xcc-8004.2743.1	0.75	+0.2
2,658,005	+		Xcc-8004.2743.1	0.75	-2.4
2,658,005	+		Xcc-8004.2743.1	0.75	-0.8
2,658,005	+		Xcc-8004.2743.1	0.75	-0.6
2,658,005	+		Xcc-8004.2743.1	0.75	-1.2
2,658,006	-		Xcc-8004.2743.1	0.75	-3.7
2,658,006	-		Xcc-8004.2743.1	0.75	-1.7
2,658,006	-		Xcc-8004.2743.1	0.75	-3.1
2,658,194	+		Xcc-8004.2743.1	0.88	-0.5
2,658,194	+		Xcc-8004.2743.1	0.88	-0.4
2,658,195	-		Xcc-8004.2743.1	0.88	-0.9
2,658,221	+				+0.1
2,658,221	+				+0.1
2,658,221	+				-0.1
2,658,221	+				-1.7
2,658,221	+				+0.6
2,658,221	+				+0.3
2,658,221	+				-1.9
2,658,222	-				-0.6
2,658,222	-				-1.1
2,658,222	-				-1.6
2,658,222	-				-1.9
2,658,222	-				-0.8
2,658,256	+				+1.5
2,658,256	+				+1.4
2,658,256	+				-0.0
2,658,256	+				-0.9
2,658,256	+				-0.4
2,658,256	+				-1.1
2,658,257	-				+5.7
2,658,257	-				+1.5
2,658,257	-				+0.6
2,658,257	-				-1.2
2,658,257	-				-0.4
2,658,257	-				+2.9
2,658,300	+				-0.9
2,658,301	-				-0.7
2,658,301	-				-3.3
2,658,301	-				-0.9
2,658,301	-				-1.4
2,658,399	+				-1.5
2,658,399	+				+0.4
2,658,399	+				-0.2
2,658,399	+				+0.2
2,658,400	-				+1.6
2,658,400	-				-1.4
2,658,504	+				-0.2
2,658,504	+				-0.0
2,658,504	+				-1.1
2,658,504	+				-0.3
2,658,504	+				-1.1
2,658,504	+				+0.4
2,658,504	+				+0.6
2,658,504	+				+0.6
2,658,505	-				+2.3
2,658,505	-				-0.4
2,658,505	-				-3.1
2,658,505	-				-2.2
2,658,505	-				+0.2
2,658,505	-				+2.8
2,658,507	+				-0.7
2,658,507	+				+0.6
2,658,507	+				-2.5
2,658,507	+				+0.3
2,658,507	+				-1.6
2,658,508	-				+0.1
2,658,579	+		Xcc-8004.2744.1	0.14	-2.7
2,658,579	+		Xcc-8004.2744.1	0.14	+0.1
2,658,579	+		Xcc-8004.2744.1	0.14	+1.2
2,658,580	-		Xcc-8004.2744.1	0.14	-0.0
2,658,580	-		Xcc-8004.2744.1	0.14	-0.4
2,658,580	-		Xcc-8004.2744.1	0.14	-0.4
2,658,580	-		Xcc-8004.2744.1	0.14	-2.3
2,658,585	+		Xcc-8004.2744.1	0.14	+1.6
2,658,586	-		Xcc-8004.2744.1	0.14	+1.7
2,658,586	-		Xcc-8004.2744.1	0.14	-0.4
2,658,586	-		Xcc-8004.2744.1	0.14	-1.1
2,658,586	-		Xcc-8004.2744.1	0.14	-0.6
2,658,586	-		Xcc-8004.2744.1	0.14	+1.5
2,658,586	-		Xcc-8004.2744.1	0.14	+1.5
2,658,735	+		Xcc-8004.2744.1	0.26	-0.7
2,658,736	-		Xcc-8004.2744.1	0.26	-2.2
2,658,789	+		Xcc-8004.2744.1	0.30	+1.7
2,658,789	+		Xcc-8004.2744.1	0.30	-1.2
2,658,789	+		Xcc-8004.2744.1	0.30	+0.8
2,658,789	+		Xcc-8004.2744.1	0.30	-0.1
2,658,789	+		Xcc-8004.2744.1	0.30	-1.0
2,658,789	+		Xcc-8004.2744.1	0.30	+0.6
2,658,789	+		Xcc-8004.2744.1	0.30	-2.2
2,658,790	-		Xcc-8004.2744.1	0.30	-2.2
2,658,790	-		Xcc-8004.2744.1	0.30	+0.8
2,658,790	-		Xcc-8004.2744.1	0.30	-0.9
2,658,790	-		Xcc-8004.2744.1	0.30	-1.4
2,658,790	-		Xcc-8004.2744.1	0.30	+1.6
2,658,790	-		Xcc-8004.2744.1	0.30	-0.6
2,658,790	-		Xcc-8004.2744.1	0.30	+1.9
2,658,790	-		Xcc-8004.2744.1	0.30	+0.8
2,658,844	+		Xcc-8004.2744.1	0.34	+0.6
2,658,882	+		Xcc-8004.2744.1	0.37	+0.4
2,658,882	+		Xcc-8004.2744.1	0.37	+1.8
2,658,883	-		Xcc-8004.2744.1	0.37	-0.5
2,658,924	+		Xcc-8004.2744.1	0.40	-0.3
2,658,961	+		Xcc-8004.2744.1	0.43	+1.8
2,658,961	+		Xcc-8004.2744.1	0.43	-2.4
2,658,961	+		Xcc-8004.2744.1	0.43	-0.2
2,658,961	+		Xcc-8004.2744.1	0.43	+0.0
2,658,961	+		Xcc-8004.2744.1	0.43	-1.8
2,658,961	+		Xcc-8004.2744.1	0.43	-0.7
2,658,962	-		Xcc-8004.2744.1	0.43	-3.4
2,658,962	-		Xcc-8004.2744.1	0.43	-2.4
2,658,962	-		Xcc-8004.2744.1	0.43	+1.2
2,658,962	-		Xcc-8004.2744.1	0.43	-2.0
2,658,962	-		Xcc-8004.2744.1	0.43	-1.9
2,658,962	-		Xcc-8004.2744.1	0.43	+1.4
2,658,984	+		Xcc-8004.2744.1	0.45	-0.9
2,658,984	+		Xcc-8004.2744.1	0.45	+0.1
2,658,984	+		Xcc-8004.2744.1	0.45	-2.7
2,658,985	-		Xcc-8004.2744.1	0.45	-2.2
2,658,985	-		Xcc-8004.2744.1	0.45	+1.0
2,658,985	-		Xcc-8004.2744.1	0.45	-1.2
2,659,118	+		Xcc-8004.2744.1	0.55	+1.4
2,659,118	+		Xcc-8004.2744.1	0.55	+1.1
2,659,119	-		Xcc-8004.2744.1	0.55	-0.0
2,659,119	-		Xcc-8004.2744.1	0.55	+0.6
2,659,119	-		Xcc-8004.2744.1	0.55	-1.0
2,659,119	-		Xcc-8004.2744.1	0.55	-1.8