Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2559.1 and Xcc-8004.2561.1 are separated by 221 nucleotides Xcc-8004.2561.1 and Xcc-8004.2562.1 overlap by 1 nucleotides
Xcc-8004.2559.1: Xcc-8004.2559.1 - hypothetical protein, at 2,470,152 to 2,470,358
Xcc-8004.2559.1
Xcc-8004.2561.1: Xcc-8004.2561.1 - FIG01213638: hypothetical protein, at 2,470,580 to 2,471,506
Xcc-8004.2561.1
Xcc-8004.2562.1: Xcc-8004.2562.1 - FIG01210329: hypothetical protein, at 2,471,506 to 2,473,626
Xcc-8004.2562.1
Position (kb) 2470
2471
2472 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 2469.580 kb on + strand at 2469.580 kb on + strand at 2469.776 kb on - strand at 2470.059 kb on + strand at 2470.060 kb on - strand at 2470.060 kb on - strand at 2470.095 kb on + strand at 2470.095 kb on + strand at 2470.095 kb on + strand at 2470.096 kb on - strand at 2470.153 kb on + strand at 2470.153 kb on + strand at 2470.153 kb on + strand at 2470.154 kb on - strand at 2470.154 kb on - strand at 2470.154 kb on - strand at 2470.154 kb on - strand at 2470.154 kb on - strand at 2470.165 kb on + strand at 2470.165 kb on + strand at 2470.165 kb on + strand at 2470.166 kb on - strand at 2470.166 kb on - strand at 2470.166 kb on - strand at 2470.166 kb on - strand at 2470.246 kb on + strand, within Xcc-8004.2559.1 at 2470.269 kb on + strand, within Xcc-8004.2559.1 at 2470.270 kb on - strand, within Xcc-8004.2559.1 at 2470.270 kb on - strand, within Xcc-8004.2559.1 at 2470.270 kb on - strand, within Xcc-8004.2559.1 at 2470.438 kb on + strand at 2470.438 kb on + strand at 2470.542 kb on + strand at 2470.572 kb on + strand at 2470.572 kb on + strand at 2470.587 kb on + strand at 2470.587 kb on + strand at 2470.588 kb on - strand at 2470.588 kb on - strand at 2470.596 kb on + strand at 2470.627 kb on + strand at 2470.702 kb on + strand, within Xcc-8004.2561.1 at 2470.765 kb on - strand, within Xcc-8004.2561.1 at 2470.794 kb on + strand, within Xcc-8004.2561.1 at 2470.794 kb on + strand, within Xcc-8004.2561.1 at 2470.794 kb on + strand, within Xcc-8004.2561.1 at 2470.794 kb on + strand, within Xcc-8004.2561.1 at 2470.795 kb on - strand, within Xcc-8004.2561.1 at 2470.795 kb on - strand, within Xcc-8004.2561.1 at 2470.798 kb on + strand, within Xcc-8004.2561.1 at 2470.798 kb on + strand, within Xcc-8004.2561.1 at 2470.798 kb on + strand, within Xcc-8004.2561.1 at 2470.798 kb on + strand, within Xcc-8004.2561.1 at 2470.799 kb on - strand, within Xcc-8004.2561.1 at 2470.799 kb on - strand, within Xcc-8004.2561.1 at 2470.799 kb on - strand, within Xcc-8004.2561.1 at 2470.799 kb on - strand, within Xcc-8004.2561.1 at 2470.799 kb on - strand, within Xcc-8004.2561.1 at 2470.811 kb on - strand, within Xcc-8004.2561.1 at 2470.831 kb on + strand, within Xcc-8004.2561.1 at 2470.831 kb on + strand, within Xcc-8004.2561.1 at 2470.831 kb on + strand, within Xcc-8004.2561.1 at 2470.831 kb on + strand, within Xcc-8004.2561.1 at 2470.832 kb on - strand, within Xcc-8004.2561.1 at 2470.832 kb on - strand, within Xcc-8004.2561.1 at 2470.832 kb on - strand, within Xcc-8004.2561.1 at 2470.832 kb on - strand, within Xcc-8004.2561.1 at 2470.832 kb on - strand, within Xcc-8004.2561.1 at 2470.832 kb on - strand, within Xcc-8004.2561.1 at 2470.911 kb on + strand, within Xcc-8004.2561.1 at 2470.912 kb on - strand, within Xcc-8004.2561.1 at 2470.941 kb on + strand, within Xcc-8004.2561.1 at 2470.942 kb on - strand, within Xcc-8004.2561.1 at 2471.298 kb on + strand, within Xcc-8004.2561.1 at 2471.298 kb on + strand, within Xcc-8004.2561.1 at 2471.298 kb on + strand, within Xcc-8004.2561.1 at 2471.298 kb on + strand, within Xcc-8004.2561.1 at 2471.298 kb on + strand, within Xcc-8004.2561.1 at 2471.298 kb on + strand, within Xcc-8004.2561.1 at 2471.298 kb on + strand, within Xcc-8004.2561.1 at 2471.298 kb on + strand, within Xcc-8004.2561.1 at 2471.299 kb on - strand, within Xcc-8004.2561.1 at 2471.299 kb on - strand, within Xcc-8004.2561.1 at 2471.299 kb on - strand, within Xcc-8004.2561.1 at 2471.299 kb on - strand, within Xcc-8004.2561.1 at 2471.299 kb on - strand, within Xcc-8004.2561.1 at 2471.299 kb on - strand, within Xcc-8004.2561.1 at 2471.318 kb on + strand, within Xcc-8004.2561.1 at 2471.318 kb on + strand, within Xcc-8004.2561.1 at 2471.385 kb on + strand, within Xcc-8004.2561.1 at 2471.447 kb on + strand at 2471.447 kb on + strand at 2471.447 kb on + strand at 2471.447 kb on + strand at 2471.448 kb on - strand at 2471.448 kb on - strand at 2471.448 kb on - strand at 2471.448 kb on - strand at 2471.448 kb on - strand at 2471.471 kb on + strand at 2471.507 kb on + strand at 2471.507 kb on + strand at 2471.507 kb on + strand at 2471.507 kb on + strand at 2471.508 kb on - strand at 2471.508 kb on - strand at 2471.508 kb on - strand at 2471.508 kb on - strand at 2471.508 kb on - strand at 2471.508 kb on - strand at 2471.760 kb on + strand, within Xcc-8004.2562.1 at 2471.760 kb on + strand, within Xcc-8004.2562.1 at 2471.761 kb on - strand, within Xcc-8004.2562.1 at 2471.761 kb on - strand, within Xcc-8004.2562.1 at 2471.761 kb on - strand, within Xcc-8004.2562.1 at 2471.761 kb on - strand, within Xcc-8004.2562.1 at 2471.761 kb on - strand, within Xcc-8004.2562.1 at 2471.761 kb on - strand, within Xcc-8004.2562.1 at 2471.762 kb on + strand, within Xcc-8004.2562.1 at 2471.762 kb on + strand, within Xcc-8004.2562.1 at 2471.762 kb on + strand, within Xcc-8004.2562.1 at 2471.762 kb on + strand, within Xcc-8004.2562.1 at 2471.762 kb on + strand, within Xcc-8004.2562.1 at 2471.763 kb on - strand, within Xcc-8004.2562.1 at 2471.763 kb on - strand, within Xcc-8004.2562.1 at 2471.763 kb on - strand, within Xcc-8004.2562.1 at 2471.763 kb on - strand, within Xcc-8004.2562.1 at 2471.763 kb on - strand, within Xcc-8004.2562.1 at 2471.763 kb on - strand, within Xcc-8004.2562.1 at 2471.763 kb on - strand, within Xcc-8004.2562.1 at 2471.763 kb on - strand, within Xcc-8004.2562.1 at 2471.836 kb on + strand, within Xcc-8004.2562.1 at 2471.836 kb on + strand, within Xcc-8004.2562.1 at 2471.836 kb on + strand, within Xcc-8004.2562.1 at 2471.837 kb on - strand, within Xcc-8004.2562.1 at 2471.837 kb on - strand, within Xcc-8004.2562.1 at 2471.837 kb on - strand, within Xcc-8004.2562.1 at 2471.837 kb on - strand, within Xcc-8004.2562.1 at 2471.837 kb on - strand, within Xcc-8004.2562.1 at 2472.034 kb on + strand, within Xcc-8004.2562.1 at 2472.034 kb on + strand, within Xcc-8004.2562.1 at 2472.034 kb on + strand, within Xcc-8004.2562.1 at 2472.035 kb on - strand, within Xcc-8004.2562.1 at 2472.035 kb on - strand, within Xcc-8004.2562.1 at 2472.035 kb on - strand, within Xcc-8004.2562.1 at 2472.035 kb on - strand, within Xcc-8004.2562.1 at 2472.046 kb on + strand, within Xcc-8004.2562.1 at 2472.047 kb on - strand, within Xcc-8004.2562.1 at 2472.270 kb on + strand, within Xcc-8004.2562.1 at 2472.270 kb on + strand, within Xcc-8004.2562.1 at 2472.271 kb on - strand, within Xcc-8004.2562.1 at 2472.271 kb on - strand, within Xcc-8004.2562.1 at 2472.271 kb on - strand, within Xcc-8004.2562.1 at 2472.271 kb on - strand, within Xcc-8004.2562.1 at 2472.272 kb on + strand, within Xcc-8004.2562.1 at 2472.272 kb on + strand, within Xcc-8004.2562.1 at 2472.272 kb on + strand, within Xcc-8004.2562.1 at 2472.272 kb on + strand, within Xcc-8004.2562.1 at 2472.272 kb on + strand, within Xcc-8004.2562.1 at 2472.272 kb on + strand, within Xcc-8004.2562.1 at 2472.273 kb on - strand, within Xcc-8004.2562.1 at 2472.273 kb on - strand, within Xcc-8004.2562.1 at 2472.273 kb on - strand, within Xcc-8004.2562.1 at 2472.273 kb on - strand, within Xcc-8004.2562.1 at 2472.273 kb on - strand, within Xcc-8004.2562.1 at 2472.283 kb on + strand, within Xcc-8004.2562.1 at 2472.283 kb on + strand, within Xcc-8004.2562.1 at 2472.284 kb on - strand, within Xcc-8004.2562.1 at 2472.373 kb on + strand, within Xcc-8004.2562.1 at 2472.373 kb on + strand, within Xcc-8004.2562.1 at 2472.466 kb on + strand, within Xcc-8004.2562.1 at 2472.466 kb on + strand, within Xcc-8004.2562.1 at 2472.467 kb on - strand, within Xcc-8004.2562.1 at 2472.467 kb on - strand, within Xcc-8004.2562.1 at 2472.483 kb on + strand, within Xcc-8004.2562.1 at 2472.484 kb on - strand, within Xcc-8004.2562.1 at 2472.484 kb on - strand, within Xcc-8004.2562.1 at 2472.484 kb on - strand, within Xcc-8004.2562.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 2,469,580 + -0.7 2,469,580 + +0.4 2,469,776 - -0.7 2,470,059 + -0.4 2,470,060 - -0.1 2,470,060 - +0.3 2,470,095 + -0.2 2,470,095 + +2.2 2,470,095 + +0.9 2,470,096 - +0.0 2,470,153 + +1.1 2,470,153 + +1.2 2,470,153 + +0.2 2,470,154 - +2.0 2,470,154 - +0.2 2,470,154 - -1.4 2,470,154 - +0.8 2,470,154 - +1.8 2,470,165 + +0.1 2,470,165 + +0.1 2,470,165 + +0.3 2,470,166 - -2.1 2,470,166 - -3.1 2,470,166 - -2.4 2,470,166 - -0.2 2,470,246 + Xcc-8004.2559.1 0.45 -1.6 2,470,269 + Xcc-8004.2559.1 0.57 -1.2 2,470,270 - Xcc-8004.2559.1 0.57 +1.9 2,470,270 - Xcc-8004.2559.1 0.57 -1.2 2,470,270 - Xcc-8004.2559.1 0.57 +0.6 2,470,438 + +1.8 2,470,438 + -0.0 2,470,542 + +1.2 2,470,572 + -0.2 2,470,572 + -1.2 2,470,587 + +0.9 2,470,587 + +6.0 2,470,588 - +0.1 2,470,588 - +0.6 2,470,596 + -0.5 2,470,627 + -1.4 2,470,702 + Xcc-8004.2561.1 0.13 -0.1 2,470,765 - Xcc-8004.2561.1 0.20 +0.6 2,470,794 + Xcc-8004.2561.1 0.23 -2.2 2,470,794 + Xcc-8004.2561.1 0.23 -3.2 2,470,794 + Xcc-8004.2561.1 0.23 -2.2 2,470,794 + Xcc-8004.2561.1 0.23 -0.4 2,470,795 - Xcc-8004.2561.1 0.23 -1.3 2,470,795 - Xcc-8004.2561.1 0.23 -1.3 2,470,798 + Xcc-8004.2561.1 0.24 -3.7 2,470,798 + Xcc-8004.2561.1 0.24 -2.4 2,470,798 + Xcc-8004.2561.1 0.24 -1.7 2,470,798 + Xcc-8004.2561.1 0.24 -3.1 2,470,799 - Xcc-8004.2561.1 0.24 -1.7 2,470,799 - Xcc-8004.2561.1 0.24 -2.8 2,470,799 - Xcc-8004.2561.1 0.24 -2.0 2,470,799 - Xcc-8004.2561.1 0.24 -2.4 2,470,799 - Xcc-8004.2561.1 0.24 +0.6 2,470,811 - Xcc-8004.2561.1 0.25 -2.2 2,470,831 + Xcc-8004.2561.1 0.27 -0.4 2,470,831 + Xcc-8004.2561.1 0.27 -2.6 2,470,831 + Xcc-8004.2561.1 0.27 -2.2 2,470,831 + Xcc-8004.2561.1 0.27 -1.0 2,470,832 - Xcc-8004.2561.1 0.27 -0.4 2,470,832 - Xcc-8004.2561.1 0.27 -2.2 2,470,832 - Xcc-8004.2561.1 0.27 -0.7 2,470,832 - Xcc-8004.2561.1 0.27 -1.0 2,470,832 - Xcc-8004.2561.1 0.27 -1.2 2,470,832 - Xcc-8004.2561.1 0.27 +0.0 2,470,911 + Xcc-8004.2561.1 0.36 -2.0 2,470,912 - Xcc-8004.2561.1 0.36 +0.2 2,470,941 + Xcc-8004.2561.1 0.39 -2.2 2,470,942 - Xcc-8004.2561.1 0.39 -3.4 2,471,298 + Xcc-8004.2561.1 0.77 -2.4 2,471,298 + Xcc-8004.2561.1 0.77 +0.6 2,471,298 + Xcc-8004.2561.1 0.77 -1.0 2,471,298 + Xcc-8004.2561.1 0.77 -2.2 2,471,298 + Xcc-8004.2561.1 0.77 -2.4 2,471,298 + Xcc-8004.2561.1 0.77 -1.7 2,471,298 + Xcc-8004.2561.1 0.77 -1.0 2,471,298 + Xcc-8004.2561.1 0.77 -0.6 2,471,299 - Xcc-8004.2561.1 0.78 -1.7 2,471,299 - Xcc-8004.2561.1 0.78 +0.6 2,471,299 - Xcc-8004.2561.1 0.78 -1.4 2,471,299 - Xcc-8004.2561.1 0.78 -0.4 2,471,299 - Xcc-8004.2561.1 0.78 -2.7 2,471,299 - Xcc-8004.2561.1 0.78 -1.0 2,471,318 + Xcc-8004.2561.1 0.80 -2.6 2,471,318 + Xcc-8004.2561.1 0.80 +0.6 2,471,385 + Xcc-8004.2561.1 0.87 -2.0 2,471,447 + -2.2 2,471,447 + -3.1 2,471,447 + -1.7 2,471,447 + -0.4 2,471,448 - -1.0 2,471,448 - -2.0 2,471,448 - -1.0 2,471,448 - +0.6 2,471,448 - -2.6 2,471,471 + +0.7 2,471,507 + +1.9 2,471,507 + -1.0 2,471,507 + -1.0 2,471,507 + -0.3 2,471,508 - +0.6 2,471,508 - -0.9 2,471,508 - -0.4 2,471,508 - +0.1 2,471,508 - +0.2 2,471,508 - -1.2 2,471,760 + Xcc-8004.2562.1 0.12 -0.3 2,471,760 + Xcc-8004.2562.1 0.12 +0.0 2,471,761 - Xcc-8004.2562.1 0.12 -2.7 2,471,761 - Xcc-8004.2562.1 0.12 -0.4 2,471,761 - Xcc-8004.2562.1 0.12 +0.1 2,471,761 - Xcc-8004.2562.1 0.12 -0.9 2,471,761 - Xcc-8004.2562.1 0.12 +2.1 2,471,761 - Xcc-8004.2562.1 0.12 +0.6 2,471,762 + Xcc-8004.2562.1 0.12 +1.0 2,471,762 + Xcc-8004.2562.1 0.12 -0.1 2,471,762 + Xcc-8004.2562.1 0.12 -0.4 2,471,762 + Xcc-8004.2562.1 0.12 -0.9 2,471,762 + Xcc-8004.2562.1 0.12 -0.7 2,471,763 - Xcc-8004.2562.1 0.12 +1.1 2,471,763 - Xcc-8004.2562.1 0.12 -0.1 2,471,763 - Xcc-8004.2562.1 0.12 -0.2 2,471,763 - Xcc-8004.2562.1 0.12 -0.7 2,471,763 - Xcc-8004.2562.1 0.12 -1.2 2,471,763 - Xcc-8004.2562.1 0.12 -0.7 2,471,763 - Xcc-8004.2562.1 0.12 +0.6 2,471,763 - Xcc-8004.2562.1 0.12 -0.2 2,471,836 + Xcc-8004.2562.1 0.16 +0.2 2,471,836 + Xcc-8004.2562.1 0.16 +0.9 2,471,836 + Xcc-8004.2562.1 0.16 +0.5 2,471,837 - Xcc-8004.2562.1 0.16 +1.3 2,471,837 - Xcc-8004.2562.1 0.16 -0.8 2,471,837 - Xcc-8004.2562.1 0.16 -1.9 2,471,837 - Xcc-8004.2562.1 0.16 -0.2 2,471,837 - Xcc-8004.2562.1 0.16 +0.5 2,472,034 + Xcc-8004.2562.1 0.25 +0.3 2,472,034 + Xcc-8004.2562.1 0.25 +0.5 2,472,034 + Xcc-8004.2562.1 0.25 -0.5 2,472,035 - Xcc-8004.2562.1 0.25 -2.3 2,472,035 - Xcc-8004.2562.1 0.25 +0.8 2,472,035 - Xcc-8004.2562.1 0.25 +1.4 2,472,035 - Xcc-8004.2562.1 0.25 +0.6 2,472,046 + Xcc-8004.2562.1 0.25 +1.6 2,472,047 - Xcc-8004.2562.1 0.26 +2.2 2,472,270 + Xcc-8004.2562.1 0.36 +0.1 2,472,270 + Xcc-8004.2562.1 0.36 +0.9 2,472,271 - Xcc-8004.2562.1 0.36 -1.4 2,472,271 - Xcc-8004.2562.1 0.36 +0.6 2,472,271 - Xcc-8004.2562.1 0.36 +2.0 2,472,271 - Xcc-8004.2562.1 0.36 +0.1 2,472,272 + Xcc-8004.2562.1 0.36 -1.4 2,472,272 + Xcc-8004.2562.1 0.36 +2.2 2,472,272 + Xcc-8004.2562.1 0.36 -1.0 2,472,272 + Xcc-8004.2562.1 0.36 -1.7 2,472,272 + Xcc-8004.2562.1 0.36 +1.8 2,472,272 + Xcc-8004.2562.1 0.36 -1.5 2,472,273 - Xcc-8004.2562.1 0.36 +0.5 2,472,273 - Xcc-8004.2562.1 0.36 -1.2 2,472,273 - Xcc-8004.2562.1 0.36 +1.1 2,472,273 - Xcc-8004.2562.1 0.36 +1.0 2,472,273 - Xcc-8004.2562.1 0.36 +0.0 2,472,283 + Xcc-8004.2562.1 0.37 -0.4 2,472,283 + Xcc-8004.2562.1 0.37 -0.3 2,472,284 - Xcc-8004.2562.1 0.37 +1.4 2,472,373 + Xcc-8004.2562.1 0.41 +1.3 2,472,373 + Xcc-8004.2562.1 0.41 +0.6 2,472,466 + Xcc-8004.2562.1 0.45 +0.4 2,472,466 + Xcc-8004.2562.1 0.45 +1.6 2,472,467 - Xcc-8004.2562.1 0.45 +0.9 2,472,467 - Xcc-8004.2562.1 0.45 +3.6 2,472,483 + Xcc-8004.2562.1 0.46 -0.8 2,472,484 - Xcc-8004.2562.1 0.46 +1.3 2,472,484 - Xcc-8004.2562.1 0.46 -0.3 2,472,484 - Xcc-8004.2562.1 0.46 +1.6
Or see this region's nucleotide sequence