Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.251.1 and Xcc-8004.252.1 overlap by 8 nucleotides Xcc-8004.252.1 and Xcc-8004.253.1 are separated by 744 nucleotides
Xcc-8004.251.1: Xcc-8004.251.1 - Nitrogen regulation protein NtrB (EC 2.7.13.3), at 245,653 to 246,708
Xcc-8004.251.1
Xcc-8004.252.1: Xcc-8004.252.1 - Nitrogen regulation protein NtrC, at 246,701 to 248,131
Xcc-8004.252.1
Xcc-8004.253.1: Xcc-8004.253.1 - IcmF-related protein, at 248,876 to 249,256
Xcc-8004.253.1
Position (kb) 246
247
248
249 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 246.209 kb on + strand, within Xcc-8004.251.1 at 246.210 kb on - strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.307 kb on + strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.308 kb on - strand, within Xcc-8004.251.1 at 246.622 kb on + strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.623 kb on - strand at 246.720 kb on + strand at 246.969 kb on - strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.395 kb on + strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.396 kb on - strand, within Xcc-8004.252.1 at 247.764 kb on + strand, within Xcc-8004.252.1 at 247.764 kb on + strand, within Xcc-8004.252.1 at 247.764 kb on + strand, within Xcc-8004.252.1 at 247.765 kb on - strand, within Xcc-8004.252.1 at 247.765 kb on - strand, within Xcc-8004.252.1 at 247.772 kb on + strand, within Xcc-8004.252.1 at 247.773 kb on - strand, within Xcc-8004.252.1 at 247.773 kb on - strand, within Xcc-8004.252.1 at 247.773 kb on - strand, within Xcc-8004.252.1 at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.134 kb on + strand at 248.135 kb on - strand at 248.202 kb on + strand at 248.202 kb on + strand at 248.202 kb on + strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.203 kb on - strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.385 kb on + strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.386 kb on - strand at 248.435 kb on + strand at 248.524 kb on - strand at 248.615 kb on - strand at 248.629 kb on + strand at 248.629 kb on + strand at 248.629 kb on + strand at 248.630 kb on - strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.631 kb on + strand at 248.632 kb on - strand at 248.636 kb on + strand at 248.637 kb on + strand at 248.637 kb on + strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.638 kb on - strand at 248.646 kb on - strand at 248.702 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.886 kb on + strand at 248.887 kb on - strand at 248.887 kb on - strand at 248.930 kb on + strand, within Xcc-8004.253.1 at 248.931 kb on - strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.975 kb on + strand, within Xcc-8004.253.1 at 248.976 kb on - strand, within Xcc-8004.253.1 at 248.976 kb on - strand, within Xcc-8004.253.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 246,209 + Xcc-8004.251.1 0.53 +0.4 246,210 - Xcc-8004.251.1 0.53 -1.6 246,307 + Xcc-8004.251.1 0.62 -1.6 246,307 + Xcc-8004.251.1 0.62 +0.4 246,307 + Xcc-8004.251.1 0.62 -2.5 246,308 - Xcc-8004.251.1 0.62 -4.1 246,308 - Xcc-8004.251.1 0.62 -2.9 246,308 - Xcc-8004.251.1 0.62 -2.9 246,308 - Xcc-8004.251.1 0.62 +0.7 246,622 + -0.3 246,623 - -1.3 246,623 - -0.7 246,623 - -1.6 246,623 - +0.7 246,720 + +1.3 246,969 - Xcc-8004.252.1 0.19 -0.3 247,395 + Xcc-8004.252.1 0.48 +0.7 247,395 + Xcc-8004.252.1 0.48 -2.2 247,395 + Xcc-8004.252.1 0.48 +0.2 247,395 + Xcc-8004.252.1 0.48 -1.6 247,395 + Xcc-8004.252.1 0.48 -2.1 247,395 + Xcc-8004.252.1 0.48 -2.1 247,395 + Xcc-8004.252.1 0.48 -0.6 247,395 + Xcc-8004.252.1 0.48 -2.1 247,395 + Xcc-8004.252.1 0.48 -2.5 247,396 - Xcc-8004.252.1 0.49 -2.3 247,396 - Xcc-8004.252.1 0.49 -2.3 247,396 - Xcc-8004.252.1 0.49 -1.9 247,396 - Xcc-8004.252.1 0.49 -0.2 247,396 - Xcc-8004.252.1 0.49 -2.5 247,396 - Xcc-8004.252.1 0.49 -3.6 247,396 - Xcc-8004.252.1 0.49 -1.6 247,396 - Xcc-8004.252.1 0.49 -1.1 247,396 - Xcc-8004.252.1 0.49 -1.7 247,764 + Xcc-8004.252.1 0.74 +0.2 247,764 + Xcc-8004.252.1 0.74 -0.9 247,764 + Xcc-8004.252.1 0.74 -1.1 247,765 - Xcc-8004.252.1 0.74 -1.9 247,765 - Xcc-8004.252.1 0.74 -1.9 247,772 + Xcc-8004.252.1 0.75 -1.6 247,773 - Xcc-8004.252.1 0.75 -2.4 247,773 - Xcc-8004.252.1 0.75 -1.5 247,773 - Xcc-8004.252.1 0.75 -0.9 248,134 + -1.3 248,134 + +0.3 248,134 + -0.3 248,134 + -1.9 248,134 + +2.1 248,134 + -0.1 248,134 + +0.7 248,135 - -2.1 248,202 + +0.7 248,202 + +1.7 248,202 + -1.1 248,203 - -1.2 248,203 - -1.1 248,203 - +2.0 248,203 - +0.7 248,203 - +0.2 248,203 - -2.5 248,385 + -1.9 248,385 + +1.7 248,385 + +2.0 248,385 + -1.3 248,385 + -1.5 248,385 + -1.2 248,385 + -2.5 248,385 + +0.7 248,385 + -1.5 248,385 + -0.8 248,385 + +0.4 248,385 + -2.5 248,385 + +1.0 248,386 - -1.9 248,386 - +0.7 248,386 - +1.2 248,386 - +0.4 248,386 - +0.7 248,386 - -2.5 248,386 - -2.7 248,386 - -2.3 248,386 - +2.3 248,386 - -2.0 248,386 - -0.7 248,435 + +0.0 248,524 - +0.6 248,615 - -0.4 248,629 + +0.7 248,629 + -1.0 248,629 + +1.9 248,630 - +1.0 248,631 + +1.3 248,631 + +0.7 248,631 + +0.7 248,631 + +0.1 248,632 - -2.2 248,636 + -0.3 248,637 + +1.8 248,637 + -0.9 248,638 - -0.5 248,638 - -0.1 248,638 - -1.4 248,638 - -3.3 248,638 - +0.3 248,638 - -1.5 248,638 - +1.2 248,646 - -0.0 248,702 + -0.5 248,886 + +1.5 248,886 + -0.4 248,886 + +1.3 248,886 + -1.3 248,886 + +1.0 248,886 + +0.3 248,887 - -0.0 248,887 - -1.1 248,930 + Xcc-8004.253.1 0.14 +1.1 248,931 - Xcc-8004.253.1 0.14 -1.2 248,975 + Xcc-8004.253.1 0.26 -0.3 248,975 + Xcc-8004.253.1 0.26 +1.7 248,975 + Xcc-8004.253.1 0.26 -1.7 248,975 + Xcc-8004.253.1 0.26 -0.1 248,975 + Xcc-8004.253.1 0.26 -2.0 248,975 + Xcc-8004.253.1 0.26 +0.1 248,975 + Xcc-8004.253.1 0.26 -0.5 248,976 - Xcc-8004.253.1 0.26 +2.0 248,976 - Xcc-8004.253.1 0.26 -0.5
Or see this region's nucleotide sequence