Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2385.1 and Xcc-8004.2386.1 are separated by 34 nucleotides Xcc-8004.2386.1 and Xcc-8004.2387.1 overlap by 1 nucleotides
Xcc-8004.2385.1: Xcc-8004.2385.1 - lipopolysaccharide core biosynthesis protein, at 2,326,729 to 2,327,703
Xcc-8004.2385.1
Xcc-8004.2386.1: Xcc-8004.2386.1 - UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-), at 2,327,738 to 2,329,624
Xcc-8004.2386.1
Xcc-8004.2387.1: Xcc-8004.2387.1 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 2,329,624 to 2,330,517
Xcc-8004.2387.1
Position (kb) 2327
2328
2329
2330 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 2326.757 kb on + strand at 2326.757 kb on + strand at 2326.757 kb on + strand at 2326.757 kb on + strand at 2326.757 kb on + strand at 2326.757 kb on + strand at 2326.757 kb on + strand at 2326.758 kb on - strand at 2326.758 kb on - strand at 2326.758 kb on - strand at 2326.758 kb on - strand at 2326.758 kb on - strand at 2326.758 kb on - strand at 2326.758 kb on - strand at 2326.758 kb on - strand at 2326.758 kb on - strand at 2326.763 kb on + strand at 2326.763 kb on + strand at 2326.763 kb on + strand at 2326.763 kb on + strand at 2326.763 kb on + strand at 2326.763 kb on + strand at 2326.763 kb on + strand at 2326.763 kb on + strand at 2326.763 kb on + strand at 2326.764 kb on - strand at 2326.764 kb on - strand at 2326.764 kb on - strand at 2326.764 kb on - strand at 2326.764 kb on - strand at 2326.764 kb on - strand at 2326.764 kb on - strand at 2326.764 kb on - strand at 2326.764 kb on - strand at 2326.764 kb on - strand at 2326.764 kb on - strand at 2326.802 kb on - strand at 2326.802 kb on - strand at 2326.802 kb on - strand at 2326.851 kb on + strand, within Xcc-8004.2385.1 at 2326.860 kb on + strand, within Xcc-8004.2385.1 at 2326.884 kb on + strand, within Xcc-8004.2385.1 at 2326.884 kb on + strand, within Xcc-8004.2385.1 at 2326.884 kb on + strand, within Xcc-8004.2385.1 at 2326.884 kb on + strand, within Xcc-8004.2385.1 at 2326.884 kb on + strand, within Xcc-8004.2385.1 at 2326.884 kb on + strand, within Xcc-8004.2385.1 at 2326.885 kb on - strand, within Xcc-8004.2385.1 at 2326.885 kb on - strand, within Xcc-8004.2385.1 at 2326.885 kb on - strand, within Xcc-8004.2385.1 at 2326.885 kb on - strand, within Xcc-8004.2385.1 at 2326.928 kb on + strand, within Xcc-8004.2385.1 at 2326.928 kb on + strand, within Xcc-8004.2385.1 at 2326.928 kb on + strand, within Xcc-8004.2385.1 at 2326.928 kb on + strand, within Xcc-8004.2385.1 at 2326.928 kb on + strand, within Xcc-8004.2385.1 at 2326.928 kb on + strand, within Xcc-8004.2385.1 at 2326.929 kb on - strand, within Xcc-8004.2385.1 at 2326.929 kb on - strand, within Xcc-8004.2385.1 at 2326.929 kb on - strand, within Xcc-8004.2385.1 at 2326.929 kb on - strand, within Xcc-8004.2385.1 at 2326.929 kb on - strand, within Xcc-8004.2385.1 at 2326.929 kb on - strand, within Xcc-8004.2385.1 at 2326.929 kb on - strand, within Xcc-8004.2385.1 at 2326.946 kb on + strand, within Xcc-8004.2385.1 at 2326.946 kb on + strand, within Xcc-8004.2385.1 at 2326.947 kb on - strand, within Xcc-8004.2385.1 at 2326.947 kb on - strand, within Xcc-8004.2385.1 at 2326.973 kb on + strand, within Xcc-8004.2385.1 at 2326.973 kb on + strand, within Xcc-8004.2385.1 at 2326.974 kb on - strand, within Xcc-8004.2385.1 at 2326.974 kb on - strand, within Xcc-8004.2385.1 at 2326.974 kb on - strand, within Xcc-8004.2385.1 at 2326.974 kb on - strand, within Xcc-8004.2385.1 at 2326.974 kb on - strand, within Xcc-8004.2385.1 at 2326.974 kb on - strand, within Xcc-8004.2385.1 at 2327.081 kb on + strand, within Xcc-8004.2385.1 at 2327.082 kb on - strand, within Xcc-8004.2385.1 at 2327.082 kb on - strand, within Xcc-8004.2385.1 at 2327.088 kb on + strand, within Xcc-8004.2385.1 at 2327.089 kb on - strand, within Xcc-8004.2385.1 at 2327.089 kb on - strand, within Xcc-8004.2385.1 at 2327.089 kb on - strand, within Xcc-8004.2385.1 at 2327.089 kb on - strand, within Xcc-8004.2385.1 at 2327.345 kb on - strand, within Xcc-8004.2385.1 at 2327.345 kb on - strand, within Xcc-8004.2385.1 at 2327.345 kb on - strand, within Xcc-8004.2385.1 at 2327.345 kb on - strand, within Xcc-8004.2385.1 at 2327.506 kb on + strand, within Xcc-8004.2385.1 at 2327.506 kb on + strand, within Xcc-8004.2385.1 at 2327.507 kb on - strand, within Xcc-8004.2385.1 at 2327.558 kb on - strand, within Xcc-8004.2385.1 at 2327.558 kb on - strand, within Xcc-8004.2385.1 at 2327.597 kb on + strand, within Xcc-8004.2385.1 at 2327.598 kb on - strand, within Xcc-8004.2385.1 at 2327.872 kb on + strand at 2327.872 kb on + strand at 2327.873 kb on - strand at 2327.873 kb on - strand at 2327.925 kb on - strand at 2327.925 kb on - strand at 2327.925 kb on - strand at 2327.925 kb on - strand at 2328.020 kb on + strand, within Xcc-8004.2386.1 at 2328.020 kb on + strand, within Xcc-8004.2386.1 at 2328.020 kb on + strand, within Xcc-8004.2386.1 at 2328.780 kb on + strand, within Xcc-8004.2386.1 at 2328.780 kb on + strand, within Xcc-8004.2386.1 at 2328.780 kb on + strand, within Xcc-8004.2386.1 at 2328.781 kb on - strand, within Xcc-8004.2386.1 at 2328.781 kb on - strand, within Xcc-8004.2386.1 at 2328.821 kb on + strand, within Xcc-8004.2386.1 at 2328.821 kb on + strand, within Xcc-8004.2386.1 at 2328.822 kb on - strand, within Xcc-8004.2386.1 at 2328.822 kb on - strand, within Xcc-8004.2386.1 at 2328.832 kb on - strand, within Xcc-8004.2386.1 at 2328.832 kb on - strand, within Xcc-8004.2386.1 at 2328.832 kb on - strand, within Xcc-8004.2386.1 at 2328.993 kb on - strand, within Xcc-8004.2386.1 at 2329.160 kb on + strand, within Xcc-8004.2386.1 at 2329.161 kb on - strand, within Xcc-8004.2386.1 at 2329.161 kb on - strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.232 kb on + strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.233 kb on - strand, within Xcc-8004.2386.1 at 2329.234 kb on + strand, within Xcc-8004.2386.1 at 2329.234 kb on + strand, within Xcc-8004.2386.1 at 2329.235 kb on - strand, within Xcc-8004.2386.1 at 2329.235 kb on - strand, within Xcc-8004.2386.1 at 2329.235 kb on - strand, within Xcc-8004.2386.1 at 2329.235 kb on - strand, within Xcc-8004.2386.1 at 2329.331 kb on + strand, within Xcc-8004.2386.1 at 2329.331 kb on + strand, within Xcc-8004.2386.1 at 2329.376 kb on + strand, within Xcc-8004.2386.1 at 2329.376 kb on + strand, within Xcc-8004.2386.1 at 2329.376 kb on + strand, within Xcc-8004.2386.1 at 2329.377 kb on - strand, within Xcc-8004.2386.1 at 2329.377 kb on - strand, within Xcc-8004.2386.1 at 2329.377 kb on - strand, within Xcc-8004.2386.1 at 2329.496 kb on + strand at 2329.583 kb on - strand at 2329.623 kb on - strand at 2329.636 kb on - strand at 2329.636 kb on - strand at 2329.650 kb on - strand at 2329.744 kb on + strand, within Xcc-8004.2387.1 at 2329.826 kb on - strand, within Xcc-8004.2387.1 at 2329.841 kb on - strand, within Xcc-8004.2387.1 at 2329.841 kb on - strand, within Xcc-8004.2387.1 at 2330.140 kb on + strand, within Xcc-8004.2387.1 at 2330.252 kb on - strand, within Xcc-8004.2387.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 2,326,757 + -1.3 2,326,757 + -2.5 2,326,757 + -2.9 2,326,757 + -2.8 2,326,757 + -0.3 2,326,757 + -1.5 2,326,757 + -2.5 2,326,758 - -1.3 2,326,758 - -2.9 2,326,758 - -4.5 2,326,758 - -4.3 2,326,758 - -2.0 2,326,758 - -1.5 2,326,758 - -0.5 2,326,758 - +1.7 2,326,758 - -0.0 2,326,763 + -4.7 2,326,763 + -1.3 2,326,763 + -0.9 2,326,763 + -1.9 2,326,763 + -4.0 2,326,763 + -3.3 2,326,763 + -2.1 2,326,763 + -2.4 2,326,763 + -4.1 2,326,764 - -1.6 2,326,764 - -0.9 2,326,764 - -0.3 2,326,764 - -3.4 2,326,764 - -3.2 2,326,764 - +0.7 2,326,764 - +0.7 2,326,764 - -1.3 2,326,764 - -1.6 2,326,764 - -2.5 2,326,764 - -1.1 2,326,802 - -3.9 2,326,802 - -2.1 2,326,802 - -0.9 2,326,851 + Xcc-8004.2385.1 0.13 -2.8 2,326,860 + Xcc-8004.2385.1 0.13 -2.7 2,326,884 + Xcc-8004.2385.1 0.16 -3.8 2,326,884 + Xcc-8004.2385.1 0.16 -1.8 2,326,884 + Xcc-8004.2385.1 0.16 -0.1 2,326,884 + Xcc-8004.2385.1 0.16 +0.7 2,326,884 + Xcc-8004.2385.1 0.16 -3.5 2,326,884 + Xcc-8004.2385.1 0.16 -3.2 2,326,885 - Xcc-8004.2385.1 0.16 -2.5 2,326,885 - Xcc-8004.2385.1 0.16 -3.8 2,326,885 - Xcc-8004.2385.1 0.16 -2.2 2,326,885 - Xcc-8004.2385.1 0.16 -1.2 2,326,928 + Xcc-8004.2385.1 0.20 -3.9 2,326,928 + Xcc-8004.2385.1 0.20 -1.8 2,326,928 + Xcc-8004.2385.1 0.20 -3.9 2,326,928 + Xcc-8004.2385.1 0.20 -4.1 2,326,928 + Xcc-8004.2385.1 0.20 -4.1 2,326,928 + Xcc-8004.2385.1 0.20 -2.6 2,326,929 - Xcc-8004.2385.1 0.21 -1.4 2,326,929 - Xcc-8004.2385.1 0.21 -3.5 2,326,929 - Xcc-8004.2385.1 0.21 -1.5 2,326,929 - Xcc-8004.2385.1 0.21 -0.0 2,326,929 - Xcc-8004.2385.1 0.21 -1.9 2,326,929 - Xcc-8004.2385.1 0.21 -1.9 2,326,929 - Xcc-8004.2385.1 0.21 -2.6 2,326,946 + Xcc-8004.2385.1 0.22 +0.3 2,326,946 + Xcc-8004.2385.1 0.22 -1.7 2,326,947 - Xcc-8004.2385.1 0.22 -4.2 2,326,947 - Xcc-8004.2385.1 0.22 -3.3 2,326,973 + Xcc-8004.2385.1 0.25 -1.9 2,326,973 + Xcc-8004.2385.1 0.25 -2.9 2,326,974 - Xcc-8004.2385.1 0.25 -2.0 2,326,974 - Xcc-8004.2385.1 0.25 -2.6 2,326,974 - Xcc-8004.2385.1 0.25 -2.3 2,326,974 - Xcc-8004.2385.1 0.25 -1.1 2,326,974 - Xcc-8004.2385.1 0.25 -2.5 2,326,974 - Xcc-8004.2385.1 0.25 -1.5 2,327,081 + Xcc-8004.2385.1 0.36 -1.9 2,327,082 - Xcc-8004.2385.1 0.36 -1.6 2,327,082 - Xcc-8004.2385.1 0.36 -2.1 2,327,088 + Xcc-8004.2385.1 0.37 -2.3 2,327,089 - Xcc-8004.2385.1 0.37 -3.2 2,327,089 - Xcc-8004.2385.1 0.37 -2.5 2,327,089 - Xcc-8004.2385.1 0.37 -3.7 2,327,089 - Xcc-8004.2385.1 0.37 -2.1 2,327,345 - Xcc-8004.2385.1 0.63 -2.5 2,327,345 - Xcc-8004.2385.1 0.63 +0.5 2,327,345 - Xcc-8004.2385.1 0.63 -1.1 2,327,345 - Xcc-8004.2385.1 0.63 -2.6 2,327,506 + Xcc-8004.2385.1 0.80 -3.0 2,327,506 + Xcc-8004.2385.1 0.80 -0.3 2,327,507 - Xcc-8004.2385.1 0.80 +0.7 2,327,558 - Xcc-8004.2385.1 0.85 -2.8 2,327,558 - Xcc-8004.2385.1 0.85 -2.2 2,327,597 + Xcc-8004.2385.1 0.89 -2.6 2,327,598 - Xcc-8004.2385.1 0.89 -1.4 2,327,872 + -0.3 2,327,872 + -3.1 2,327,873 - -2.6 2,327,873 - -4.5 2,327,925 - -3.5 2,327,925 - -2.8 2,327,925 - -0.9 2,327,925 - -2.2 2,328,020 + Xcc-8004.2386.1 0.15 -1.1 2,328,020 + Xcc-8004.2386.1 0.15 -2.6 2,328,020 + Xcc-8004.2386.1 0.15 -1.8 2,328,780 + Xcc-8004.2386.1 0.55 -2.7 2,328,780 + Xcc-8004.2386.1 0.55 -2.1 2,328,780 + Xcc-8004.2386.1 0.55 -1.3 2,328,781 - Xcc-8004.2386.1 0.55 +1.4 2,328,781 - Xcc-8004.2386.1 0.55 -3.0 2,328,821 + Xcc-8004.2386.1 0.57 -3.9 2,328,821 + Xcc-8004.2386.1 0.57 -2.8 2,328,822 - Xcc-8004.2386.1 0.57 -2.8 2,328,822 - Xcc-8004.2386.1 0.57 -2.3 2,328,832 - Xcc-8004.2386.1 0.58 -0.5 2,328,832 - Xcc-8004.2386.1 0.58 -1.6 2,328,832 - Xcc-8004.2386.1 0.58 -2.9 2,328,993 - Xcc-8004.2386.1 0.67 -1.7 2,329,160 + Xcc-8004.2386.1 0.75 -1.3 2,329,161 - Xcc-8004.2386.1 0.75 +0.5 2,329,161 - Xcc-8004.2386.1 0.75 +0.7 2,329,232 + Xcc-8004.2386.1 0.79 -0.3 2,329,232 + Xcc-8004.2386.1 0.79 -0.9 2,329,232 + Xcc-8004.2386.1 0.79 +1.7 2,329,232 + Xcc-8004.2386.1 0.79 -1.5 2,329,232 + Xcc-8004.2386.1 0.79 -2.0 2,329,232 + Xcc-8004.2386.1 0.79 -2.1 2,329,232 + Xcc-8004.2386.1 0.79 -3.0 2,329,232 + Xcc-8004.2386.1 0.79 -2.6 2,329,232 + Xcc-8004.2386.1 0.79 -0.3 2,329,232 + Xcc-8004.2386.1 0.79 -1.6 2,329,232 + Xcc-8004.2386.1 0.79 -1.4 2,329,232 + Xcc-8004.2386.1 0.79 -1.3 2,329,232 + Xcc-8004.2386.1 0.79 -3.2 2,329,232 + Xcc-8004.2386.1 0.79 -2.9 2,329,232 + Xcc-8004.2386.1 0.79 -2.1 2,329,232 + Xcc-8004.2386.1 0.79 -2.3 2,329,232 + Xcc-8004.2386.1 0.79 -2.9 2,329,232 + Xcc-8004.2386.1 0.79 -0.6 2,329,232 + Xcc-8004.2386.1 0.79 -0.3 2,329,232 + Xcc-8004.2386.1 0.79 -2.1 2,329,232 + Xcc-8004.2386.1 0.79 -1.4 2,329,233 - Xcc-8004.2386.1 0.79 -2.9 2,329,233 - Xcc-8004.2386.1 0.79 -0.1 2,329,233 - Xcc-8004.2386.1 0.79 -1.5 2,329,233 - Xcc-8004.2386.1 0.79 -2.4 2,329,233 - Xcc-8004.2386.1 0.79 -3.5 2,329,233 - Xcc-8004.2386.1 0.79 -1.1 2,329,233 - Xcc-8004.2386.1 0.79 -2.9 2,329,233 - Xcc-8004.2386.1 0.79 -1.6 2,329,233 - Xcc-8004.2386.1 0.79 -1.8 2,329,233 - Xcc-8004.2386.1 0.79 -4.4 2,329,233 - Xcc-8004.2386.1 0.79 -1.1 2,329,233 - Xcc-8004.2386.1 0.79 -0.9 2,329,233 - Xcc-8004.2386.1 0.79 -2.7 2,329,234 + Xcc-8004.2386.1 0.79 -0.7 2,329,234 + Xcc-8004.2386.1 0.79 -3.2 2,329,235 - Xcc-8004.2386.1 0.79 +0.7 2,329,235 - Xcc-8004.2386.1 0.79 -3.9 2,329,235 - Xcc-8004.2386.1 0.79 -2.1 2,329,235 - Xcc-8004.2386.1 0.79 -2.5 2,329,331 + Xcc-8004.2386.1 0.84 -1.9 2,329,331 + Xcc-8004.2386.1 0.84 -4.2 2,329,376 + Xcc-8004.2386.1 0.87 -0.9 2,329,376 + Xcc-8004.2386.1 0.87 -2.9 2,329,376 + Xcc-8004.2386.1 0.87 -0.4 2,329,377 - Xcc-8004.2386.1 0.87 -3.6 2,329,377 - Xcc-8004.2386.1 0.87 -1.9 2,329,377 - Xcc-8004.2386.1 0.87 +1.0 2,329,496 + -1.0 2,329,583 - -0.6 2,329,623 - -2.1 2,329,636 - -1.6 2,329,636 - -1.9 2,329,650 - -1.6 2,329,744 + Xcc-8004.2387.1 0.13 -0.3 2,329,826 - Xcc-8004.2387.1 0.23 -4.1 2,329,841 - Xcc-8004.2387.1 0.24 -2.3 2,329,841 - Xcc-8004.2387.1 0.24 -2.9 2,330,140 + Xcc-8004.2387.1 0.58 -0.3 2,330,252 - Xcc-8004.2387.1 0.70 -2.1
Or see this region's nucleotide sequence