Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2384.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
2,324,769	+				-0.5
2,324,778	-				+1.3
2,325,207	+				+2.1
2,325,212	+				-0.5
2,325,212	+				+0.1
2,325,212	+				+0.1
2,325,212	+				-0.4
2,325,213	-				+1.4
2,325,213	-				+1.7
2,325,213	-				-0.4
2,325,213	-				-1.3
2,325,213	-				-0.2
2,325,213	-				+3.3
2,325,440	+		Xcc-8004.2383.1	0.66	-0.6
2,325,440	+		Xcc-8004.2383.1	0.66	-0.6
2,325,441	-		Xcc-8004.2383.1	0.66	-3.4
2,325,441	-		Xcc-8004.2383.1	0.66	-1.8
2,325,441	-		Xcc-8004.2383.1	0.66	+4.0
2,325,542	+				+0.3
2,325,542	+				+0.4
2,325,542	+				+0.4
2,325,542	+				-1.5
2,325,542	+				-1.8
2,325,542	+				+1.0
2,325,542	+				+0.7
2,325,542	+				-0.5
2,325,542	+				+2.1
2,325,542	+				-0.6
2,325,542	+				+2.0
2,325,542	+				+0.8
2,325,542	+				+0.1
2,325,542	+				-2.3
2,325,543	-				-2.2
2,325,543	-				-2.5
2,325,543	-				-2.4
2,325,543	-				-1.8
2,325,543	-				+0.2
2,325,543	-				-4.2
2,325,543	-				-3.0
2,325,543	-				-3.7
2,325,543	-				+0.1
2,325,543	-				-2.9
2,325,543	-				-4.4
2,325,543	-				-1.7
2,325,543	-				-2.0
2,325,543	-				-1.6
2,325,543	-				-3.9
2,325,543	-				-1.5
2,325,543	-				-2.6
2,325,543	-				-1.5
2,325,543	-				-1.2
2,325,543	-				-3.3
2,325,543	-				-4.1
2,325,543	-				-2.4
2,325,546	+				-2.8
2,325,546	+				+1.7
2,325,546	+				-0.3
2,325,546	+				-0.8
2,325,546	+				+0.7
2,325,546	+				-1.0
2,325,546	+				-0.8
2,325,546	+				-0.9
2,325,546	+				-0.1
2,325,546	+				+1.3
2,325,546	+				-3.2
2,325,547	-				-0.9
2,325,547	-				-1.6
2,325,547	-				-3.5
2,325,547	-				-2.9
2,325,547	-				-0.3
2,325,547	-				-3.5
2,325,547	-				-0.9
2,325,547	-				-0.9
2,325,547	-				-1.3
2,325,547	-				-0.3
2,325,547	-				-1.5
2,325,550	+				-0.4
2,325,550	+				-2.8
2,325,550	+				-2.0
2,325,550	+				+0.5
2,325,550	+				-1.6
2,325,550	+				+3.1
2,325,550	+				-2.1
2,325,550	+				+0.7
2,325,550	+				-0.8
2,325,551	-				-2.2
2,325,551	-				-0.8
2,325,551	-				-2.4
2,325,551	-				+0.1
2,325,551	-				-0.3
2,325,551	-				-1.6
2,325,551	-				+0.3
2,325,551	-				-3.0
2,325,551	-				-1.3
2,325,551	-				-0.3
2,325,551	-				+0.1
2,325,551	-				-3.6
2,325,551	-				-2.3
2,325,551	-				-2.5
2,325,551	-				+0.7
2,325,551	-				-2.0
2,325,551	-				-3.4
2,325,680	+		Xcc-8004.2384.1	0.11	-0.3
2,325,680	+		Xcc-8004.2384.1	0.11	-2.1
2,325,680	+		Xcc-8004.2384.1	0.11	-2.1
2,325,680	+		Xcc-8004.2384.1	0.11	-1.4
2,325,680	+		Xcc-8004.2384.1	0.11	-1.0
2,325,680	+		Xcc-8004.2384.1	0.11	-3.2
2,325,680	+		Xcc-8004.2384.1	0.11	+0.7
2,325,681	-		Xcc-8004.2384.1	0.11	-1.3
2,325,681	-		Xcc-8004.2384.1	0.11	-4.2
2,325,681	-		Xcc-8004.2384.1	0.11	-3.0
2,325,681	-		Xcc-8004.2384.1	0.11	-1.6
2,325,681	-		Xcc-8004.2384.1	0.11	-4.4
2,325,681	-		Xcc-8004.2384.1	0.11	-3.9
2,325,681	-		Xcc-8004.2384.1	0.11	-1.4
2,325,681	-		Xcc-8004.2384.1	0.11	-3.3
2,325,698	+		Xcc-8004.2384.1	0.12	-1.3
2,325,698	+		Xcc-8004.2384.1	0.12	+0.1
2,325,698	+		Xcc-8004.2384.1	0.12	-0.3
2,325,698	+		Xcc-8004.2384.1	0.12	-0.8
2,325,698	+		Xcc-8004.2384.1	0.12	+0.3
2,325,699	-		Xcc-8004.2384.1	0.13	-2.8
2,325,699	-		Xcc-8004.2384.1	0.13	-2.0
2,325,699	-		Xcc-8004.2384.1	0.13	-3.2
2,325,699	-		Xcc-8004.2384.1	0.13	-4.5
2,325,699	-		Xcc-8004.2384.1	0.13	+0.3
2,325,699	-		Xcc-8004.2384.1	0.13	-4.2
2,325,699	-		Xcc-8004.2384.1	0.13	-1.4
2,325,746	-		Xcc-8004.2384.1	0.17	-1.9
2,325,914	+		Xcc-8004.2384.1	0.31	-1.6
2,325,914	+		Xcc-8004.2384.1	0.31	-3.2
2,325,914	+		Xcc-8004.2384.1	0.31	+0.8
2,325,914	+		Xcc-8004.2384.1	0.31	-2.0
2,325,914	+		Xcc-8004.2384.1	0.31	-2.1
2,325,914	+		Xcc-8004.2384.1	0.31	-1.5
2,325,914	+		Xcc-8004.2384.1	0.31	-2.6
2,325,914	+		Xcc-8004.2384.1	0.31	-0.2
2,325,915	-		Xcc-8004.2384.1	0.31	-3.3
2,325,915	-		Xcc-8004.2384.1	0.31	-1.1
2,325,915	-		Xcc-8004.2384.1	0.31	-4.3
2,325,915	-		Xcc-8004.2384.1	0.31	-3.6
2,325,915	-		Xcc-8004.2384.1	0.31	-2.6
2,325,915	-		Xcc-8004.2384.1	0.31	-2.1
2,325,915	-		Xcc-8004.2384.1	0.31	-3.2
2,326,016	+		Xcc-8004.2384.1	0.39	-2.1
2,326,016	+		Xcc-8004.2384.1	0.39	-1.3
2,326,016	+		Xcc-8004.2384.1	0.39	-1.8
2,326,016	+		Xcc-8004.2384.1	0.39	-0.3
2,326,016	+		Xcc-8004.2384.1	0.39	+2.7
2,326,017	-		Xcc-8004.2384.1	0.40	-2.4
2,326,017	-		Xcc-8004.2384.1	0.40	-1.8
2,326,017	-		Xcc-8004.2384.1	0.40	-2.0
2,326,017	-		Xcc-8004.2384.1	0.40	+1.7
2,326,017	-		Xcc-8004.2384.1	0.40	-2.0
2,326,017	-		Xcc-8004.2384.1	0.40	-1.4
2,326,017	-		Xcc-8004.2384.1	0.40	+0.3
2,326,064	+		Xcc-8004.2384.1	0.44	-0.1
2,326,065	-		Xcc-8004.2384.1	0.44	-2.6
2,326,065	-		Xcc-8004.2384.1	0.44	-3.7
2,326,134	-		Xcc-8004.2384.1	0.49	-1.3
2,326,148	-		Xcc-8004.2384.1	0.51	-3.7
2,326,184	+		Xcc-8004.2384.1	0.54	-2.9
2,326,184	+		Xcc-8004.2384.1	0.54	-3.0
2,326,185	-		Xcc-8004.2384.1	0.54	-3.1
2,326,304	+		Xcc-8004.2384.1	0.64	-0.6
2,326,305	-		Xcc-8004.2384.1	0.64	-3.8
2,326,305	-		Xcc-8004.2384.1	0.64	-1.6
2,326,305	-		Xcc-8004.2384.1	0.64	-4.9
2,326,475	+		Xcc-8004.2384.1	0.78	-1.5
2,326,475	+		Xcc-8004.2384.1	0.78	-0.3
2,326,476	-		Xcc-8004.2384.1	0.78	-0.9
2,326,476	-		Xcc-8004.2384.1	0.78	-0.9
2,326,509	+		Xcc-8004.2384.1	0.81	-0.3
2,326,622	+				+0.7
2,326,622	+				-1.3
2,326,623	-				-1.2
2,326,623	-				-2.6
2,326,623	-				-1.6
2,326,623	-				-2.2
2,326,623	-				-0.3
2,326,623	-				-2.5
2,326,623	-				-3.3
2,326,623	-				-0.3
2,326,715	+				+1.1
2,326,715	+				-0.5
2,326,716	-				+0.9
2,326,716	-				+5.8
2,326,716	-				-0.1
2,326,716	-				-1.1
2,326,716	-				+2.8
2,326,716	-				-0.8
2,326,727	+				-1.0
2,326,727	+				-1.9
2,326,727	+				-1.4
2,326,728	-				+0.9
2,326,728	-				+1.3
2,326,757	+				-1.3
2,326,757	+				-2.5
2,326,757	+				-2.9
2,326,757	+				-2.8
2,326,757	+				-0.3
2,326,757	+				-1.5
2,326,757	+				-2.5
2,326,758	-				-1.3
2,326,758	-				-2.9
2,326,758	-				-4.5
2,326,758	-				-4.3
2,326,758	-				-2.0
2,326,758	-				-1.5
2,326,758	-				-0.5
2,326,758	-				+1.7
2,326,758	-				-0.0
2,326,763	+				-4.7
2,326,763	+				-1.3
2,326,763	+				-0.9
2,326,763	+				-1.9
2,326,763	+				-4.0
2,326,763	+				-3.3
2,326,763	+				-2.1
2,326,763	+				-2.4
2,326,763	+				-4.1
2,326,764	-				-1.6
2,326,764	-				-0.9
2,326,764	-				-0.3
2,326,764	-				-3.4
2,326,764	-				-3.2
2,326,764	-				+0.7
2,326,764	-				+0.7
2,326,764	-				-1.3
2,326,764	-				-1.6
2,326,764	-				-2.5
2,326,764	-				-1.1
2,326,802	-				-3.9
2,326,802	-				-2.1
2,326,802	-				-0.9
2,326,851	+		Xcc-8004.2385.1	0.13	-2.8
2,326,860	+		Xcc-8004.2385.1	0.13	-2.7
2,326,884	+		Xcc-8004.2385.1	0.16	-3.8
2,326,884	+		Xcc-8004.2385.1	0.16	-1.8
2,326,884	+		Xcc-8004.2385.1	0.16	-0.1
2,326,884	+		Xcc-8004.2385.1	0.16	+0.7
2,326,884	+		Xcc-8004.2385.1	0.16	-3.5
2,326,884	+		Xcc-8004.2385.1	0.16	-3.2
2,326,885	-		Xcc-8004.2385.1	0.16	-2.5
2,326,885	-		Xcc-8004.2385.1	0.16	-3.8
2,326,885	-		Xcc-8004.2385.1	0.16	-2.2
2,326,885	-		Xcc-8004.2385.1	0.16	-1.2
2,326,928	+		Xcc-8004.2385.1	0.20	-3.9
2,326,928	+		Xcc-8004.2385.1	0.20	-1.8
2,326,928	+		Xcc-8004.2385.1	0.20	-3.9
2,326,928	+		Xcc-8004.2385.1	0.20	-4.1
2,326,928	+		Xcc-8004.2385.1	0.20	-4.1
2,326,928	+		Xcc-8004.2385.1	0.20	-2.6
2,326,929	-		Xcc-8004.2385.1	0.21	-1.4
2,326,929	-		Xcc-8004.2385.1	0.21	-3.5
2,326,929	-		Xcc-8004.2385.1	0.21	-1.5
2,326,929	-		Xcc-8004.2385.1	0.21	-0.0
2,326,929	-		Xcc-8004.2385.1	0.21	-1.9
2,326,929	-		Xcc-8004.2385.1	0.21	-1.9
2,326,929	-		Xcc-8004.2385.1	0.21	-2.6
2,326,946	+		Xcc-8004.2385.1	0.22	+0.3
2,326,946	+		Xcc-8004.2385.1	0.22	-1.7
2,326,947	-		Xcc-8004.2385.1	0.22	-4.2
2,326,947	-		Xcc-8004.2385.1	0.22	-3.3
2,326,973	+		Xcc-8004.2385.1	0.25	-1.9
2,326,973	+		Xcc-8004.2385.1	0.25	-2.9
2,326,974	-		Xcc-8004.2385.1	0.25	-2.0
2,326,974	-		Xcc-8004.2385.1	0.25	-2.6
2,326,974	-		Xcc-8004.2385.1	0.25	-2.3
2,326,974	-		Xcc-8004.2385.1	0.25	-1.1
2,326,974	-		Xcc-8004.2385.1	0.25	-2.5
2,326,974	-		Xcc-8004.2385.1	0.25	-1.5
2,327,081	+		Xcc-8004.2385.1	0.36	-1.9
2,327,082	-		Xcc-8004.2385.1	0.36	-1.6
2,327,082	-		Xcc-8004.2385.1	0.36	-2.1
2,327,088	+		Xcc-8004.2385.1	0.37	-2.3
2,327,089	-		Xcc-8004.2385.1	0.37	-3.2
2,327,089	-		Xcc-8004.2385.1	0.37	-2.5
2,327,089	-		Xcc-8004.2385.1	0.37	-3.7
2,327,089	-		Xcc-8004.2385.1	0.37	-2.1
2,327,345	-		Xcc-8004.2385.1	0.63	-2.5
2,327,345	-		Xcc-8004.2385.1	0.63	+0.5
2,327,345	-		Xcc-8004.2385.1	0.63	-1.1
2,327,345	-		Xcc-8004.2385.1	0.63	-2.6
2,327,506	+		Xcc-8004.2385.1	0.80	-3.0
2,327,506	+		Xcc-8004.2385.1	0.80	-0.3
2,327,507	-		Xcc-8004.2385.1	0.80	+0.7
2,327,558	-		Xcc-8004.2385.1	0.85	-2.8
2,327,558	-		Xcc-8004.2385.1	0.85	-2.2
2,327,597	+		Xcc-8004.2385.1	0.89	-2.6
2,327,598	-		Xcc-8004.2385.1	0.89	-1.4