Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2260.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2258.1 and Xcc-8004.2259.1 are separated by 44 nucleotidesXcc-8004.2259.1 and Xcc-8004.2260.1 are separated by 159 nucleotidesXcc-8004.2260.1 and Xcc-8004.2261.1 are separated by 89 nucleotides Xcc-8004.2258.1: Xcc-8004.2258.1 - FIG01210620: hypothetical protein, at 2,212,278 to 2,213,243 Xcc-8004.2258.1 Xcc-8004.2259.1: Xcc-8004.2259.1 - PhbF, at 2,213,288 to 2,213,854 Xcc-8004.2259.1 Xcc-8004.2260.1: Xcc-8004.2260.1 - Acetoacetyl-CoA reductase (EC 1.1.1.36), at 2,214,014 to 2,214,754 Xcc-8004.2260.1 Xcc-8004.2261.1: Xcc-8004.2261.1 - glutamyl-Q-tRNA synthetase, at 2,214,844 to 2,215,737 Xcc-8004.2261.1 Position (kb) 2214 2215Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2213.043 kb on + strand, within Xcc-8004.2258.1at 2213.044 kb on - strand, within Xcc-8004.2258.1at 2213.044 kb on - strand, within Xcc-8004.2258.1at 2213.044 kb on - strand, within Xcc-8004.2258.1at 2213.044 kb on - strand, within Xcc-8004.2258.1at 2213.120 kb on + strand, within Xcc-8004.2258.1at 2213.120 kb on + strand, within Xcc-8004.2258.1at 2213.120 kb on + strand, within Xcc-8004.2258.1at 2213.120 kb on + strand, within Xcc-8004.2258.1at 2213.120 kb on + strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.121 kb on - strand, within Xcc-8004.2258.1at 2213.289 kb on + strandat 2213.290 kb on - strandat 2213.351 kb on + strand, within Xcc-8004.2259.1at 2213.352 kb on - strand, within Xcc-8004.2259.1at 2213.352 kb on - strand, within Xcc-8004.2259.1at 2213.352 kb on - strand, within Xcc-8004.2259.1at 2213.395 kb on + strand, within Xcc-8004.2259.1at 2213.395 kb on + strand, within Xcc-8004.2259.1at 2213.577 kb on + strand, within Xcc-8004.2259.1at 2213.577 kb on + strand, within Xcc-8004.2259.1at 2213.578 kb on - strand, within Xcc-8004.2259.1at 2213.578 kb on - strand, within Xcc-8004.2259.1at 2213.581 kb on + strand, within Xcc-8004.2259.1at 2213.581 kb on + strand, within Xcc-8004.2259.1at 2213.581 kb on + strand, within Xcc-8004.2259.1at 2213.582 kb on - strand, within Xcc-8004.2259.1at 2213.582 kb on - strand, within Xcc-8004.2259.1at 2213.582 kb on - strand, within Xcc-8004.2259.1at 2213.582 kb on - strand, within Xcc-8004.2259.1at 2213.610 kb on + strand, within Xcc-8004.2259.1at 2213.787 kb on + strand, within Xcc-8004.2259.1at 2213.787 kb on + strand, within Xcc-8004.2259.1at 2213.787 kb on + strand, within Xcc-8004.2259.1at 2213.788 kb on - strand, within Xcc-8004.2259.1at 2213.788 kb on - strand, within Xcc-8004.2259.1at 2213.788 kb on - strand, within Xcc-8004.2259.1at 2213.788 kb on - strand, within Xcc-8004.2259.1at 2213.809 kb on - strandat 2213.875 kb on + strandat 2213.875 kb on + strandat 2213.876 kb on - strandat 2213.876 kb on - strandat 2213.876 kb on - strandat 2213.876 kb on - strandat 2214.016 kb on - strandat 2214.102 kb on + strand, within Xcc-8004.2260.1at 2214.102 kb on + strand, within Xcc-8004.2260.1at 2214.103 kb on - strand, within Xcc-8004.2260.1at 2214.204 kb on + strand, within Xcc-8004.2260.1at 2214.204 kb on + strand, within Xcc-8004.2260.1at 2214.205 kb on - strand, within Xcc-8004.2260.1at 2214.205 kb on - strand, within Xcc-8004.2260.1at 2214.205 kb on - strand, within Xcc-8004.2260.1at 2214.205 kb on - strand, within Xcc-8004.2260.1at 2214.300 kb on + strand, within Xcc-8004.2260.1at 2214.300 kb on + strand, within Xcc-8004.2260.1at 2214.301 kb on - strand, within Xcc-8004.2260.1at 2214.301 kb on - strand, within Xcc-8004.2260.1at 2214.315 kb on + strand, within Xcc-8004.2260.1at 2214.315 kb on + strand, within Xcc-8004.2260.1at 2214.315 kb on + strand, within Xcc-8004.2260.1at 2214.316 kb on - strand, within Xcc-8004.2260.1at 2214.775 kb on + strandat 2214.776 kb on - strandat 2214.841 kb on + strandat 2214.841 kb on + strandat 2214.841 kb on + strandat 2214.842 kb on - strandat 2214.842 kb on - strandat 2214.842 kb on - strandat 2215.100 kb on + strand, within Xcc-8004.2261.1at 2215.100 kb on + strand, within Xcc-8004.2261.1at 2215.229 kb on + strand, within Xcc-8004.2261.1at 2215.229 kb on + strand, within Xcc-8004.2261.1at 2215.229 kb on + strand, within Xcc-8004.2261.1at 2215.229 kb on + strand, within Xcc-8004.2261.1at 2215.229 kb on + strand, within Xcc-8004.2261.1at 2215.229 kb on + strand, within Xcc-8004.2261.1at 2215.230 kb on - strand, within Xcc-8004.2261.1at 2215.230 kb on - strand, within Xcc-8004.2261.1at 2215.238 kb on + strand, within Xcc-8004.2261.1at 2215.238 kb on + strand, within Xcc-8004.2261.1at 2215.270 kb on + strand, within Xcc-8004.2261.1at 2215.270 kb on + strand, within Xcc-8004.2261.1at 2215.271 kb on - strand, within Xcc-8004.2261.1at 2215.271 kb on - strand, within Xcc-8004.2261.1at 2215.271 kb on - strand, within Xcc-8004.2261.1at 2215.280 kb on + strand, within Xcc-8004.2261.1at 2215.280 kb on + strand, within Xcc-8004.2261.1at 2215.280 kb on + strand, within Xcc-8004.2261.1at 2215.281 kb on - strand, within Xcc-8004.2261.1at 2215.281 kb on - strand, within Xcc-8004.2261.1at 2215.281 kb on - strand, within Xcc-8004.2261.1at 2215.281 kb on - strand, within Xcc-8004.2261.1at 2215.281 kb on - strand, within Xcc-8004.2261.1at 2215.281 kb on - strand, within Xcc-8004.2261.1at 2215.281 kb on - strand, within Xcc-8004.2261.1at 2215.281 kb on - strand, within Xcc-8004.2261.1at 2215.484 kb on + strand, within Xcc-8004.2261.1at 2215.484 kb on + strand, within Xcc-8004.2261.1at 2215.484 kb on + strand, within Xcc-8004.2261.1at 2215.484 kb on + strand, within Xcc-8004.2261.1at 2215.484 kb on + strand, within Xcc-8004.2261.1at 2215.484 kb on + strand, within Xcc-8004.2261.1at 2215.487 kb on + strand, within Xcc-8004.2261.1at 2215.487 kb on + strand, within Xcc-8004.2261.1at 2215.487 kb on + strand, within Xcc-8004.2261.1at 2215.487 kb on + strand, within Xcc-8004.2261.1at 2215.487 kb on + strand, within Xcc-8004.2261.1at 2215.487 kb on + strand, within Xcc-8004.2261.1at 2215.487 kb on + strand, within Xcc-8004.2261.1at 2215.487 kb on + strand, within Xcc-8004.2261.1at 2215.488 kb on - strand, within Xcc-8004.2261.1at 2215.488 kb on - strand, within Xcc-8004.2261.1at 2215.488 kb on - strand, within Xcc-8004.2261.1at 2215.488 kb on - strand, within Xcc-8004.2261.1at 2215.488 kb on - strand, within Xcc-8004.2261.1at 2215.488 kb on - strand, within Xcc-8004.2261.1at 2215.488 kb on - strand, within Xcc-8004.2261.1at 2215.488 kb on - strand, within Xcc-8004.2261.1at 2215.508 kb on + strand, within Xcc-8004.2261.1at 2215.508 kb on + strand, within Xcc-8004.2261.1at 2215.508 kb on + strand, within Xcc-8004.2261.1at 2215.508 kb on + strand, within Xcc-8004.2261.1at 2215.509 kb on - strand, within Xcc-8004.2261.1at 2215.551 kb on + strand, within Xcc-8004.2261.1at 2215.551 kb on + strand, within Xcc-8004.2261.1at 2215.551 kb on + strand, within Xcc-8004.2261.1at 2215.551 kb on + strand, within Xcc-8004.2261.1at 2215.552 kb on - strand, within Xcc-8004.2261.1at 2215.552 kb on - strand, within Xcc-8004.2261.1at 2215.552 kb on - strand, within Xcc-8004.2261.1at 2215.552 kb on - strand, within Xcc-8004.2261.1at 2215.552 kb on - strand, within Xcc-8004.2261.1at 2215.552 kb on - strand, within Xcc-8004.2261.1at 2215.552 kb on - strand, within Xcc-8004.2261.1at 2215.552 kb on - strand, within Xcc-8004.2261.1at 2215.552 kb on - strand, within Xcc-8004.2261.1at 2215.552 kb on - strand, within Xcc-8004.2261.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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2,213,043 + Xcc-8004.2258.1 0.79 -1.6
2,213,044 - Xcc-8004.2258.1 0.79 -0.4
2,213,044 - Xcc-8004.2258.1 0.79 +0.3
2,213,044 - Xcc-8004.2258.1 0.79 +1.2
2,213,044 - Xcc-8004.2258.1 0.79 +0.4
2,213,120 + Xcc-8004.2258.1 0.87 -0.2
2,213,120 + Xcc-8004.2258.1 0.87 -0.3
2,213,120 + Xcc-8004.2258.1 0.87 +1.0
2,213,120 + Xcc-8004.2258.1 0.87 +0.5
2,213,120 + Xcc-8004.2258.1 0.87 +0.8
2,213,121 - Xcc-8004.2258.1 0.87 -1.0
2,213,121 - Xcc-8004.2258.1 0.87 +1.2
2,213,121 - Xcc-8004.2258.1 0.87 -2.1
2,213,121 - Xcc-8004.2258.1 0.87 -0.5
2,213,121 - Xcc-8004.2258.1 0.87 -1.8
2,213,121 - Xcc-8004.2258.1 0.87 +0.4
2,213,289 + +0.2
2,213,290 - +0.2
2,213,351 + Xcc-8004.2259.1 0.11 -0.8
2,213,352 - Xcc-8004.2259.1 0.11 -0.4
2,213,352 - Xcc-8004.2259.1 0.11 +0.8
2,213,352 - Xcc-8004.2259.1 0.11 -1.0
2,213,395 + Xcc-8004.2259.1 0.19 +1.6
2,213,395 + Xcc-8004.2259.1 0.19 -0.1
2,213,577 + Xcc-8004.2259.1 0.51 -1.6
2,213,577 + Xcc-8004.2259.1 0.51 +0.8
2,213,578 - Xcc-8004.2259.1 0.51 +0.1
2,213,578 - Xcc-8004.2259.1 0.51 -0.8
2,213,581 + Xcc-8004.2259.1 0.52 -0.8
2,213,581 + Xcc-8004.2259.1 0.52 -2.7
2,213,581 + Xcc-8004.2259.1 0.52 -1.2
2,213,582 - Xcc-8004.2259.1 0.52 +1.5
2,213,582 - Xcc-8004.2259.1 0.52 -1.2
2,213,582 - Xcc-8004.2259.1 0.52 +1.8
2,213,582 - Xcc-8004.2259.1 0.52 +3.1
2,213,610 + Xcc-8004.2259.1 0.57 -0.3
2,213,787 + Xcc-8004.2259.1 0.88 -0.8
2,213,787 + Xcc-8004.2259.1 0.88 -1.8
2,213,787 + Xcc-8004.2259.1 0.88 +0.8
2,213,788 - Xcc-8004.2259.1 0.88 -1.2
2,213,788 - Xcc-8004.2259.1 0.88 +1.1
2,213,788 - Xcc-8004.2259.1 0.88 -0.2
2,213,788 - Xcc-8004.2259.1 0.88 -2.0
2,213,809 - -0.6
2,213,875 + -0.2
2,213,875 + +1.5
2,213,876 - +0.4
2,213,876 - +0.1
2,213,876 - +2.0
2,213,876 - +2.0
2,214,016 - +1.4
2,214,102 + Xcc-8004.2260.1 0.12 -0.9
2,214,102 + Xcc-8004.2260.1 0.12 -0.2
2,214,103 - Xcc-8004.2260.1 0.12 -0.6
2,214,204 + Xcc-8004.2260.1 0.26 -1.0
2,214,204 + Xcc-8004.2260.1 0.26 -3.3
2,214,205 - Xcc-8004.2260.1 0.26 -0.7
2,214,205 - Xcc-8004.2260.1 0.26 -3.3
2,214,205 - Xcc-8004.2260.1 0.26 -3.0
2,214,205 - Xcc-8004.2260.1 0.26 -3.9
2,214,300 + Xcc-8004.2260.1 0.39 -2.8
2,214,300 + Xcc-8004.2260.1 0.39 -2.8
2,214,301 - Xcc-8004.2260.1 0.39 -1.9
2,214,301 - Xcc-8004.2260.1 0.39 -1.8
2,214,315 + Xcc-8004.2260.1 0.41 -2.8
2,214,315 + Xcc-8004.2260.1 0.41 -2.4
2,214,315 + Xcc-8004.2260.1 0.41 -2.2
2,214,316 - Xcc-8004.2260.1 0.41 +0.4
2,214,775 + +0.3
2,214,776 - +0.8
2,214,841 + +1.2
2,214,841 + -1.2
2,214,841 + +0.0
2,214,842 - -3.6
2,214,842 - +1.8
2,214,842 - -1.7
2,215,100 + Xcc-8004.2261.1 0.29 -0.6
2,215,100 + Xcc-8004.2261.1 0.29 +0.2
2,215,229 + Xcc-8004.2261.1 0.43 -0.1
2,215,229 + Xcc-8004.2261.1 0.43 +3.1
2,215,229 + Xcc-8004.2261.1 0.43 -2.0
2,215,229 + Xcc-8004.2261.1 0.43 +1.6
2,215,229 + Xcc-8004.2261.1 0.43 -0.1
2,215,229 + Xcc-8004.2261.1 0.43 +0.8
2,215,230 - Xcc-8004.2261.1 0.43 +0.8
2,215,230 - Xcc-8004.2261.1 0.43 -1.2
2,215,238 + Xcc-8004.2261.1 0.44 +1.0
2,215,238 + Xcc-8004.2261.1 0.44 +0.6
2,215,270 + Xcc-8004.2261.1 0.48 +2.4
2,215,270 + Xcc-8004.2261.1 0.48 +0.3
2,215,271 - Xcc-8004.2261.1 0.48 +0.1
2,215,271 - Xcc-8004.2261.1 0.48 -2.7
2,215,271 - Xcc-8004.2261.1 0.48 -2.6
2,215,280 + Xcc-8004.2261.1 0.49 +2.4
2,215,280 + Xcc-8004.2261.1 0.49 -1.1
2,215,280 + Xcc-8004.2261.1 0.49 +1.8
2,215,281 - Xcc-8004.2261.1 0.49 +1.3
2,215,281 - Xcc-8004.2261.1 0.49 +0.1
2,215,281 - Xcc-8004.2261.1 0.49 -2.0
2,215,281 - Xcc-8004.2261.1 0.49 -0.8
2,215,281 - Xcc-8004.2261.1 0.49 -0.7
2,215,281 - Xcc-8004.2261.1 0.49 +0.3
2,215,281 - Xcc-8004.2261.1 0.49 -1.3
2,215,281 - Xcc-8004.2261.1 0.49 -1.2
2,215,484 + Xcc-8004.2261.1 0.72 -2.1
2,215,484 + Xcc-8004.2261.1 0.72 +0.3
2,215,484 + Xcc-8004.2261.1 0.72 -0.7
2,215,484 + Xcc-8004.2261.1 0.72 +2.5
2,215,484 + Xcc-8004.2261.1 0.72 -0.2
2,215,484 + Xcc-8004.2261.1 0.72 -0.2
2,215,487 + Xcc-8004.2261.1 0.72 +1.9
2,215,487 + Xcc-8004.2261.1 0.72 -0.8
2,215,487 + Xcc-8004.2261.1 0.72 -0.2
2,215,487 + Xcc-8004.2261.1 0.72 -0.7
2,215,487 + Xcc-8004.2261.1 0.72 -0.6
2,215,487 + Xcc-8004.2261.1 0.72 -0.7
2,215,487 + Xcc-8004.2261.1 0.72 +0.6
2,215,487 + Xcc-8004.2261.1 0.72 -0.6
2,215,488 - Xcc-8004.2261.1 0.72 -0.2
2,215,488 - Xcc-8004.2261.1 0.72 +0.5
2,215,488 - Xcc-8004.2261.1 0.72 +0.2
2,215,488 - Xcc-8004.2261.1 0.72 -2.9
2,215,488 - Xcc-8004.2261.1 0.72 -0.3
2,215,488 - Xcc-8004.2261.1 0.72 +0.5
2,215,488 - Xcc-8004.2261.1 0.72 +0.5
2,215,488 - Xcc-8004.2261.1 0.72 +0.2
2,215,508 + Xcc-8004.2261.1 0.74 -0.8
2,215,508 + Xcc-8004.2261.1 0.74 -1.4
2,215,508 + Xcc-8004.2261.1 0.74 -0.2
2,215,508 + Xcc-8004.2261.1 0.74 -0.4
2,215,509 - Xcc-8004.2261.1 0.74 +1.4
2,215,551 + Xcc-8004.2261.1 0.79 +1.4
2,215,551 + Xcc-8004.2261.1 0.79 -1.1
2,215,551 + Xcc-8004.2261.1 0.79 +0.4
2,215,551 + Xcc-8004.2261.1 0.79 +1.1
2,215,552 - Xcc-8004.2261.1 0.79 +2.4
2,215,552 - Xcc-8004.2261.1 0.79 -0.6
2,215,552 - Xcc-8004.2261.1 0.79 +1.0
2,215,552 - Xcc-8004.2261.1 0.79 -1.7
2,215,552 - Xcc-8004.2261.1 0.79 -0.2
2,215,552 - Xcc-8004.2261.1 0.79 -0.7
2,215,552 - Xcc-8004.2261.1 0.79 +1.4
2,215,552 - Xcc-8004.2261.1 0.79 +0.5
2,215,552 - Xcc-8004.2261.1 0.79 +0.1
2,215,552 - Xcc-8004.2261.1 0.79 -0.8

Or see this region's nucleotide sequence