Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2219.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2217.1 and Xcc-8004.2219.1 overlap by 4 nucleotidesXcc-8004.2219.1 and Xcc-8004.2220.1 are separated by 311 nucleotidesXcc-8004.2220.1 and Xcc-8004.2221.1 overlap by 1 nucleotides Xcc-8004.2217.1: Xcc-8004.2217.1 - FIG01209779: hypothetical protein, at 2,168,214 to 2,169,452 Xcc-8004.2217.1 Xcc-8004.2219.1: Xcc-8004.2219.1 - Magnesium and cobalt efflux protein CorC, at 2,169,449 to 2,170,345 Xcc-8004.2219.1 Xcc-8004.2220.1: Xcc-8004.2220.1 - FIG01210646: hypothetical protein, at 2,170,657 to 2,171,175 Xcc-8004.2220.1 Xcc-8004.2221.1: Xcc-8004.2221.1 - Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly, at 2,171,175 to 2,171,660 Xcc-8004.2221.1 Position (kb) 2169 2170 2171Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2168.469 kb on - strand, within Xcc-8004.2217.1at 2168.512 kb on + strand, within Xcc-8004.2217.1at 2168.512 kb on + strand, within Xcc-8004.2217.1at 2168.512 kb on + strand, within Xcc-8004.2217.1at 2168.513 kb on - strand, within Xcc-8004.2217.1at 2168.513 kb on - strand, within Xcc-8004.2217.1at 2168.513 kb on - strand, within Xcc-8004.2217.1at 2169.149 kb on - strand, within Xcc-8004.2217.1at 2169.149 kb on - strand, within Xcc-8004.2217.1at 2169.151 kb on + strand, within Xcc-8004.2217.1at 2169.151 kb on + strand, within Xcc-8004.2217.1at 2169.151 kb on + strand, within Xcc-8004.2217.1at 2169.152 kb on - strand, within Xcc-8004.2217.1at 2169.152 kb on - strand, within Xcc-8004.2217.1at 2169.152 kb on - strand, within Xcc-8004.2217.1at 2169.220 kb on + strand, within Xcc-8004.2217.1at 2169.221 kb on - strand, within Xcc-8004.2217.1at 2169.615 kb on + strand, within Xcc-8004.2219.1at 2169.615 kb on + strand, within Xcc-8004.2219.1at 2169.616 kb on - strand, within Xcc-8004.2219.1at 2169.616 kb on - strand, within Xcc-8004.2219.1at 2169.616 kb on - strand, within Xcc-8004.2219.1at 2169.616 kb on - strand, within Xcc-8004.2219.1at 2169.687 kb on + strand, within Xcc-8004.2219.1at 2169.687 kb on + strand, within Xcc-8004.2219.1at 2169.688 kb on - strand, within Xcc-8004.2219.1at 2169.688 kb on - strand, within Xcc-8004.2219.1at 2169.688 kb on - strand, within Xcc-8004.2219.1at 2169.688 kb on - strand, within Xcc-8004.2219.1at 2169.813 kb on + strand, within Xcc-8004.2219.1at 2169.836 kb on - strand, within Xcc-8004.2219.1at 2169.836 kb on - strand, within Xcc-8004.2219.1at 2169.836 kb on - strand, within Xcc-8004.2219.1at 2169.836 kb on - strand, within Xcc-8004.2219.1at 2170.231 kb on + strand, within Xcc-8004.2219.1at 2170.276 kb on + strandat 2170.276 kb on + strandat 2170.277 kb on - strandat 2170.309 kb on + strandat 2170.310 kb on - strandat 2170.362 kb on + strandat 2170.375 kb on - strandat 2170.375 kb on - strandat 2170.375 kb on - strandat 2170.512 kb on + strandat 2170.512 kb on + strandat 2170.512 kb on + strandat 2170.512 kb on + strandat 2170.512 kb on + strandat 2170.512 kb on + strandat 2170.512 kb on + strandat 2170.512 kb on + strandat 2170.512 kb on + strandat 2170.513 kb on - strandat 2170.513 kb on - strandat 2170.513 kb on - strandat 2170.513 kb on - strandat 2170.676 kb on + strandat 2170.677 kb on - strandat 2170.677 kb on - strandat 2170.802 kb on + strand, within Xcc-8004.2220.1at 2170.802 kb on + strand, within Xcc-8004.2220.1at 2170.802 kb on + strand, within Xcc-8004.2220.1at 2170.803 kb on - strand, within Xcc-8004.2220.1at 2170.803 kb on - strand, within Xcc-8004.2220.1at 2170.803 kb on - strand, within Xcc-8004.2220.1at 2170.803 kb on - strand, within Xcc-8004.2220.1at 2170.803 kb on - strand, within Xcc-8004.2220.1at 2170.803 kb on - strand, within Xcc-8004.2220.1at 2170.803 kb on - strand, within Xcc-8004.2220.1at 2170.803 kb on - strand, within Xcc-8004.2220.1at 2170.803 kb on - strand, within Xcc-8004.2220.1at 2170.914 kb on + strand, within Xcc-8004.2220.1at 2170.914 kb on + strand, within Xcc-8004.2220.1at 2170.914 kb on + strand, within Xcc-8004.2220.1at 2170.914 kb on + strand, within Xcc-8004.2220.1at 2170.914 kb on + strand, within Xcc-8004.2220.1at 2170.915 kb on - strand, within Xcc-8004.2220.1at 2170.915 kb on - strand, within Xcc-8004.2220.1at 2170.915 kb on - strand, within Xcc-8004.2220.1at 2170.915 kb on - strand, within Xcc-8004.2220.1at 2170.961 kb on + strand, within Xcc-8004.2220.1at 2170.962 kb on - strand, within Xcc-8004.2220.1at 2170.962 kb on - strand, within Xcc-8004.2220.1at 2170.962 kb on - strand, within Xcc-8004.2220.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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2,168,469 - Xcc-8004.2217.1 0.21 -1.2
2,168,512 + Xcc-8004.2217.1 0.24 -1.8
2,168,512 + Xcc-8004.2217.1 0.24 -1.4
2,168,512 + Xcc-8004.2217.1 0.24 -2.2
2,168,513 - Xcc-8004.2217.1 0.24 -1.0
2,168,513 - Xcc-8004.2217.1 0.24 -0.2
2,168,513 - Xcc-8004.2217.1 0.24 +0.8
2,169,149 - Xcc-8004.2217.1 0.75 -1.2
2,169,149 - Xcc-8004.2217.1 0.75 -0.4
2,169,151 + Xcc-8004.2217.1 0.76 -1.6
2,169,151 + Xcc-8004.2217.1 0.76 -2.0
2,169,151 + Xcc-8004.2217.1 0.76 -2.0
2,169,152 - Xcc-8004.2217.1 0.76 -2.2
2,169,152 - Xcc-8004.2217.1 0.76 +0.8
2,169,152 - Xcc-8004.2217.1 0.76 -2.6
2,169,220 + Xcc-8004.2217.1 0.81 -1.2
2,169,221 - Xcc-8004.2217.1 0.81 -0.8
2,169,615 + Xcc-8004.2219.1 0.19 -2.0
2,169,615 + Xcc-8004.2219.1 0.19 -3.0
2,169,616 - Xcc-8004.2219.1 0.19 -2.8
2,169,616 - Xcc-8004.2219.1 0.19 -2.8
2,169,616 - Xcc-8004.2219.1 0.19 -2.7
2,169,616 - Xcc-8004.2219.1 0.19 -3.7
2,169,687 + Xcc-8004.2219.1 0.27 -3.9
2,169,687 + Xcc-8004.2219.1 0.27 -0.8
2,169,688 - Xcc-8004.2219.1 0.27 +0.0
2,169,688 - Xcc-8004.2219.1 0.27 +0.8
2,169,688 - Xcc-8004.2219.1 0.27 -3.6
2,169,688 - Xcc-8004.2219.1 0.27 -1.8
2,169,813 + Xcc-8004.2219.1 0.41 +0.3
2,169,836 - Xcc-8004.2219.1 0.43 -2.9
2,169,836 - Xcc-8004.2219.1 0.43 -1.2
2,169,836 - Xcc-8004.2219.1 0.43 -0.6
2,169,836 - Xcc-8004.2219.1 0.43 -0.8
2,170,231 + Xcc-8004.2219.1 0.87 -3.9
2,170,276 + +1.7
2,170,276 + -1.4
2,170,277 - -0.6
2,170,309 + +2.3
2,170,310 - +2.0
2,170,362 + +0.8
2,170,375 - +0.3
2,170,375 - -0.8
2,170,375 - +0.2
2,170,512 + +1.4
2,170,512 + -1.9
2,170,512 + -0.8
2,170,512 + +0.2
2,170,512 + +2.7
2,170,512 + -1.0
2,170,512 + +1.2
2,170,512 + +2.1
2,170,512 + +0.8
2,170,513 - -0.6
2,170,513 - +0.3
2,170,513 - -1.4
2,170,513 - -0.0
2,170,676 + -1.8
2,170,677 - -0.8
2,170,677 - +0.9
2,170,802 + Xcc-8004.2220.1 0.28 +0.8
2,170,802 + Xcc-8004.2220.1 0.28 +0.8
2,170,802 + Xcc-8004.2220.1 0.28 -2.7
2,170,803 - Xcc-8004.2220.1 0.28 -0.2
2,170,803 - Xcc-8004.2220.1 0.28 -1.9
2,170,803 - Xcc-8004.2220.1 0.28 -1.5
2,170,803 - Xcc-8004.2220.1 0.28 -1.6
2,170,803 - Xcc-8004.2220.1 0.28 +0.9
2,170,803 - Xcc-8004.2220.1 0.28 +1.9
2,170,803 - Xcc-8004.2220.1 0.28 -0.9
2,170,803 - Xcc-8004.2220.1 0.28 -0.2
2,170,803 - Xcc-8004.2220.1 0.28 -0.5
2,170,914 + Xcc-8004.2220.1 0.50 -1.2
2,170,914 + Xcc-8004.2220.1 0.50 +1.0
2,170,914 + Xcc-8004.2220.1 0.50 -1.0
2,170,914 + Xcc-8004.2220.1 0.50 +1.3
2,170,914 + Xcc-8004.2220.1 0.50 +1.2
2,170,915 - Xcc-8004.2220.1 0.50 +2.1
2,170,915 - Xcc-8004.2220.1 0.50 -1.2
2,170,915 - Xcc-8004.2220.1 0.50 -1.2
2,170,915 - Xcc-8004.2220.1 0.50 -2.1
2,170,961 + Xcc-8004.2220.1 0.59 +0.0
2,170,962 - Xcc-8004.2220.1 0.59 +1.0
2,170,962 - Xcc-8004.2220.1 0.59 -1.4
2,170,962 - Xcc-8004.2220.1 0.59 -0.3

Or see this region's nucleotide sequence