Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2009.1 and Xcc-8004.2010.1 are separated by 8 nucleotides Xcc-8004.2010.1 and Xcc-8004.2011.1 are separated by 58 nucleotides Xcc-8004.2011.1 and Xcc-8004.2012.1 overlap by 4 nucleotides
Xcc-8004.2009.1: Xcc-8004.2009.1 - Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19), at 1,934,796 to 1,935,668
Xcc-8004.2009.1
Xcc-8004.2010.1: Xcc-8004.2010.1 - FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster, at 1,935,677 to 1,935,946
Xcc-8004.2010.1
Xcc-8004.2011.1: Xcc-8004.2011.1 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 1,936,005 to 1,936,508
Xcc-8004.2011.1
Xcc-8004.2012.1: Xcc-8004.2012.1 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 1,936,505 to 1,937,647
Xcc-8004.2012.1
Position (kb) 1936
1937 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1935.223 kb on + strand, within Xcc-8004.2009.1 at 1935.223 kb on + strand, within Xcc-8004.2009.1 at 1935.224 kb on - strand, within Xcc-8004.2009.1 at 1935.224 kb on - strand, within Xcc-8004.2009.1 at 1935.305 kb on - strand, within Xcc-8004.2009.1 at 1935.305 kb on - strand, within Xcc-8004.2009.1 at 1935.305 kb on - strand, within Xcc-8004.2009.1 at 1935.443 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.534 kb on + strand, within Xcc-8004.2009.1 at 1935.535 kb on - strand, within Xcc-8004.2009.1 at 1935.535 kb on - strand, within Xcc-8004.2009.1 at 1935.535 kb on - strand, within Xcc-8004.2009.1 at 1935.535 kb on - strand, within Xcc-8004.2009.1 at 1935.535 kb on - strand, within Xcc-8004.2009.1 at 1935.535 kb on - strand, within Xcc-8004.2009.1 at 1935.535 kb on - strand, within Xcc-8004.2009.1 at 1935.535 kb on - strand, within Xcc-8004.2009.1 at 1935.538 kb on + strand, within Xcc-8004.2009.1 at 1935.539 kb on - strand, within Xcc-8004.2009.1 at 1935.539 kb on - strand, within Xcc-8004.2009.1 at 1935.539 kb on - strand, within Xcc-8004.2009.1 at 1935.539 kb on - strand, within Xcc-8004.2009.1 at 1935.539 kb on - strand, within Xcc-8004.2009.1 at 1935.539 kb on - strand, within Xcc-8004.2009.1 at 1935.539 kb on - strand, within Xcc-8004.2009.1 at 1935.539 kb on - strand, within Xcc-8004.2009.1 at 1935.975 kb on + strand at 1935.975 kb on + strand at 1935.975 kb on + strand at 1935.976 kb on - strand at 1935.976 kb on - strand at 1935.976 kb on - strand at 1935.976 kb on - strand at 1935.976 kb on - strand at 1935.976 kb on - strand at 1935.980 kb on + strand at 1935.980 kb on + strand at 1935.980 kb on + strand at 1935.980 kb on + strand at 1935.980 kb on + strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.981 kb on - strand at 1935.988 kb on + strand at 1935.989 kb on - strand at 1936.114 kb on - strand, within Xcc-8004.2011.1 at 1936.165 kb on - strand, within Xcc-8004.2011.1 at 1936.165 kb on - strand, within Xcc-8004.2011.1 at 1936.165 kb on - strand, within Xcc-8004.2011.1 at 1936.510 kb on + strand at 1936.510 kb on + strand at 1936.510 kb on + strand at 1936.510 kb on + strand at 1936.511 kb on - strand at 1936.511 kb on - strand at 1936.511 kb on - strand at 1936.668 kb on + strand, within Xcc-8004.2012.1 at 1936.669 kb on - strand, within Xcc-8004.2012.1 at 1936.669 kb on - strand, within Xcc-8004.2012.1 at 1936.669 kb on - strand, within Xcc-8004.2012.1 at 1936.669 kb on - strand, within Xcc-8004.2012.1 at 1936.669 kb on - strand, within Xcc-8004.2012.1 at 1936.719 kb on + strand, within Xcc-8004.2012.1 at 1936.719 kb on + strand, within Xcc-8004.2012.1 at 1936.720 kb on - strand, within Xcc-8004.2012.1 at 1936.938 kb on - strand, within Xcc-8004.2012.1 at 1937.234 kb on + strand, within Xcc-8004.2012.1 at 1937.234 kb on + strand, within Xcc-8004.2012.1 at 1937.234 kb on + strand, within Xcc-8004.2012.1 at 1937.234 kb on + strand, within Xcc-8004.2012.1 at 1937.234 kb on + strand, within Xcc-8004.2012.1 at 1937.234 kb on + strand, within Xcc-8004.2012.1 at 1937.234 kb on + strand, within Xcc-8004.2012.1 at 1937.235 kb on - strand, within Xcc-8004.2012.1 at 1937.235 kb on - strand, within Xcc-8004.2012.1 at 1937.235 kb on - strand, within Xcc-8004.2012.1 at 1937.235 kb on - strand, within Xcc-8004.2012.1 at 1937.235 kb on - strand, within Xcc-8004.2012.1 at 1937.235 kb on - strand, within Xcc-8004.2012.1 at 1937.235 kb on - strand, within Xcc-8004.2012.1 at 1937.235 kb on - strand, within Xcc-8004.2012.1 at 1937.235 kb on - strand, within Xcc-8004.2012.1 at 1937.235 kb on - strand, within Xcc-8004.2012.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 1,935,223 + Xcc-8004.2009.1 0.49 -0.3 1,935,223 + Xcc-8004.2009.1 0.49 -1.7 1,935,224 - Xcc-8004.2009.1 0.49 +0.3 1,935,224 - Xcc-8004.2009.1 0.49 +0.5 1,935,305 - Xcc-8004.2009.1 0.58 +1.4 1,935,305 - Xcc-8004.2009.1 0.58 -0.5 1,935,305 - Xcc-8004.2009.1 0.58 -0.7 1,935,443 + Xcc-8004.2009.1 0.74 +1.2 1,935,534 + Xcc-8004.2009.1 0.85 -0.6 1,935,534 + Xcc-8004.2009.1 0.85 -1.5 1,935,534 + Xcc-8004.2009.1 0.85 -3.6 1,935,534 + Xcc-8004.2009.1 0.85 +0.1 1,935,534 + Xcc-8004.2009.1 0.85 +2.2 1,935,534 + Xcc-8004.2009.1 0.85 -1.2 1,935,534 + Xcc-8004.2009.1 0.85 -0.1 1,935,534 + Xcc-8004.2009.1 0.85 +0.4 1,935,534 + Xcc-8004.2009.1 0.85 +4.8 1,935,534 + Xcc-8004.2009.1 0.85 +0.5 1,935,534 + Xcc-8004.2009.1 0.85 -2.1 1,935,535 - Xcc-8004.2009.1 0.85 -0.0 1,935,535 - Xcc-8004.2009.1 0.85 +1.1 1,935,535 - Xcc-8004.2009.1 0.85 +0.5 1,935,535 - Xcc-8004.2009.1 0.85 -0.3 1,935,535 - Xcc-8004.2009.1 0.85 -2.1 1,935,535 - Xcc-8004.2009.1 0.85 -1.3 1,935,535 - Xcc-8004.2009.1 0.85 -1.8 1,935,535 - Xcc-8004.2009.1 0.85 -0.3 1,935,538 + Xcc-8004.2009.1 0.85 +0.1 1,935,539 - Xcc-8004.2009.1 0.85 +0.2 1,935,539 - Xcc-8004.2009.1 0.85 +1.1 1,935,539 - Xcc-8004.2009.1 0.85 +0.5 1,935,539 - Xcc-8004.2009.1 0.85 -1.6 1,935,539 - Xcc-8004.2009.1 0.85 +1.0 1,935,539 - Xcc-8004.2009.1 0.85 -0.7 1,935,539 - Xcc-8004.2009.1 0.85 +0.7 1,935,539 - Xcc-8004.2009.1 0.85 +1.7 1,935,975 + -1.5 1,935,975 + +0.4 1,935,975 + -0.6 1,935,976 - +0.1 1,935,976 - +1.3 1,935,976 - +4.4 1,935,976 - +4.6 1,935,976 - +0.2 1,935,976 - +1.1 1,935,980 + -0.1 1,935,980 + -0.1 1,935,980 + -0.9 1,935,980 + -0.4 1,935,980 + +1.7 1,935,981 - -1.6 1,935,981 - -3.1 1,935,981 - -2.1 1,935,981 - +0.9 1,935,981 - -0.4 1,935,981 - -2.1 1,935,981 - +1.5 1,935,981 - -1.9 1,935,981 - -4.1 1,935,981 - -2.0 1,935,981 - -3.8 1,935,981 - -3.2 1,935,988 + -0.4 1,935,989 - -4.5 1,936,114 - Xcc-8004.2011.1 0.22 -3.5 1,936,165 - Xcc-8004.2011.1 0.32 -2.7 1,936,165 - Xcc-8004.2011.1 0.32 -3.4 1,936,165 - Xcc-8004.2011.1 0.32 -2.4 1,936,510 + -0.1 1,936,510 + +1.0 1,936,510 + +2.6 1,936,510 + -1.3 1,936,511 - -1.7 1,936,511 - -2.7 1,936,511 - -1.6 1,936,668 + Xcc-8004.2012.1 0.14 -3.0 1,936,669 - Xcc-8004.2012.1 0.14 -2.3 1,936,669 - Xcc-8004.2012.1 0.14 -3.4 1,936,669 - Xcc-8004.2012.1 0.14 -2.3 1,936,669 - Xcc-8004.2012.1 0.14 -2.1 1,936,669 - Xcc-8004.2012.1 0.14 -0.9 1,936,719 + Xcc-8004.2012.1 0.19 -3.2 1,936,719 + Xcc-8004.2012.1 0.19 -1.5 1,936,720 - Xcc-8004.2012.1 0.19 -2.3 1,936,938 - Xcc-8004.2012.1 0.38 -2.1 1,937,234 + Xcc-8004.2012.1 0.64 -0.9 1,937,234 + Xcc-8004.2012.1 0.64 -2.8 1,937,234 + Xcc-8004.2012.1 0.64 -3.4 1,937,234 + Xcc-8004.2012.1 0.64 -2.9 1,937,234 + Xcc-8004.2012.1 0.64 -1.6 1,937,234 + Xcc-8004.2012.1 0.64 -4.5 1,937,234 + Xcc-8004.2012.1 0.64 -0.3 1,937,235 - Xcc-8004.2012.1 0.64 -2.4 1,937,235 - Xcc-8004.2012.1 0.64 -3.1 1,937,235 - Xcc-8004.2012.1 0.64 -1.6 1,937,235 - Xcc-8004.2012.1 0.64 -2.4 1,937,235 - Xcc-8004.2012.1 0.64 -1.3 1,937,235 - Xcc-8004.2012.1 0.64 -2.7 1,937,235 - Xcc-8004.2012.1 0.64 -2.5 1,937,235 - Xcc-8004.2012.1 0.64 -4.6 1,937,235 - Xcc-8004.2012.1 0.64 -1.3 1,937,235 - Xcc-8004.2012.1 0.64 -3.1
Or see this region's nucleotide sequence