Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1792.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1790.1 and Xcc-8004.1791.1 are separated by 237 nucleotidesXcc-8004.1791.1 and Xcc-8004.1792.1 are separated by 292 nucleotidesXcc-8004.1792.1 and Xcc-8004.1793.1 are separated by 130 nucleotides Xcc-8004.1790.1: Xcc-8004.1790.1 - Zinc uptake regulation protein ZUR, at 1,725,134 to 1,725,652 Xcc-8004.1790.1 Xcc-8004.1791.1: Xcc-8004.1791.1 - hypothetical protein, at 1,725,890 to 1,726,159 Xcc-8004.1791.1 Xcc-8004.1792.1: Xcc-8004.1792.1 - Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family, at 1,726,452 to 1,727,069 Xcc-8004.1792.1 Xcc-8004.1793.1: Xcc-8004.1793.1 - RND efflux system, membrane fusion protein CmeA, at 1,727,200 to 1,728,399 Xcc-8004.1793.1 Position (kb) 1726 1727 1728Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1725.685 kb on + strandat 1725.685 kb on + strandat 1725.685 kb on + strandat 1725.685 kb on + strandat 1725.686 kb on - strandat 1725.686 kb on - strandat 1725.686 kb on - strandat 1725.727 kb on + strandat 1725.728 kb on - strandat 1725.847 kb on + strandat 1725.848 kb on - strandat 1725.848 kb on - strandat 1725.876 kb on + strandat 1725.896 kb on + strandat 1725.934 kb on + strand, within Xcc-8004.1791.1at 1725.934 kb on + strand, within Xcc-8004.1791.1at 1725.935 kb on - strand, within Xcc-8004.1791.1at 1725.935 kb on - strand, within Xcc-8004.1791.1at 1725.935 kb on - strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.948 kb on + strand, within Xcc-8004.1791.1at 1725.949 kb on - strand, within Xcc-8004.1791.1at 1725.949 kb on - strand, within Xcc-8004.1791.1at 1725.949 kb on - strand, within Xcc-8004.1791.1at 1725.949 kb on - strand, within Xcc-8004.1791.1at 1725.952 kb on + strand, within Xcc-8004.1791.1at 1725.952 kb on + strand, within Xcc-8004.1791.1at 1725.952 kb on + strand, within Xcc-8004.1791.1at 1725.952 kb on + strand, within Xcc-8004.1791.1at 1725.952 kb on + strand, within Xcc-8004.1791.1at 1725.953 kb on - strand, within Xcc-8004.1791.1at 1725.953 kb on - strand, within Xcc-8004.1791.1at 1725.953 kb on - strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.975 kb on + strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1725.976 kb on - strand, within Xcc-8004.1791.1at 1726.024 kb on - strand, within Xcc-8004.1791.1at 1726.024 kb on - strand, within Xcc-8004.1791.1at 1726.058 kb on + strand, within Xcc-8004.1791.1at 1726.059 kb on - strand, within Xcc-8004.1791.1at 1726.198 kb on - strandat 1726.198 kb on - strandat 1726.198 kb on - strandat 1726.198 kb on - strandat 1726.198 kb on - strandat 1726.289 kb on + strandat 1726.289 kb on + strandat 1726.289 kb on + strandat 1726.289 kb on + strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.290 kb on - strandat 1726.305 kb on + strandat 1726.526 kb on - strand, within Xcc-8004.1792.1at 1726.526 kb on - strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.616 kb on + strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.617 kb on - strand, within Xcc-8004.1792.1at 1726.663 kb on + strand, within Xcc-8004.1792.1at 1726.664 kb on - strand, within Xcc-8004.1792.1at 1726.766 kb on + strand, within Xcc-8004.1792.1at 1726.766 kb on + strand, within Xcc-8004.1792.1at 1726.869 kb on + strand, within Xcc-8004.1792.1at 1726.874 kb on - strand, within Xcc-8004.1792.1at 1726.874 kb on - strand, within Xcc-8004.1792.1at 1726.930 kb on + strand, within Xcc-8004.1792.1at 1726.936 kb on + strand, within Xcc-8004.1792.1at 1726.937 kb on - strand, within Xcc-8004.1792.1at 1726.937 kb on - strand, within Xcc-8004.1792.1at 1727.081 kb on + strandat 1727.081 kb on + strandat 1727.081 kb on + strandat 1727.082 kb on - strandat 1727.082 kb on - strandat 1727.082 kb on - strandat 1727.091 kb on + strandat 1727.091 kb on + strandat 1727.091 kb on + strandat 1727.092 kb on - strandat 1727.092 kb on - strandat 1727.092 kb on - strandat 1727.092 kb on - strandat 1727.095 kb on + strandat 1727.096 kb on - strandat 1727.097 kb on + strandat 1727.271 kb on + strandat 1727.384 kb on - strand, within Xcc-8004.1793.1at 1727.384 kb on - strand, within Xcc-8004.1793.1at 1727.399 kb on + strand, within Xcc-8004.1793.1at 1727.399 kb on + strand, within Xcc-8004.1793.1at 1727.399 kb on + strand, within Xcc-8004.1793.1at 1727.399 kb on + strand, within Xcc-8004.1793.1at 1727.399 kb on + strand, within Xcc-8004.1793.1at 1727.400 kb on - strand, within Xcc-8004.1793.1at 1727.400 kb on - strand, within Xcc-8004.1793.1at 1727.400 kb on - strand, within Xcc-8004.1793.1at 1727.476 kb on + strand, within Xcc-8004.1793.1at 1727.477 kb on - strand, within Xcc-8004.1793.1at 1727.497 kb on + strand, within Xcc-8004.1793.1at 1727.509 kb on + strand, within Xcc-8004.1793.1at 1727.510 kb on - strand, within Xcc-8004.1793.1at 1727.510 kb on - strand, within Xcc-8004.1793.1at 1727.510 kb on - strand, within Xcc-8004.1793.1at 1727.582 kb on - strand, within Xcc-8004.1793.1at 1727.582 kb on - strand, within Xcc-8004.1793.1at 1727.834 kb on - strand, within Xcc-8004.1793.1at 1727.834 kb on - strand, within Xcc-8004.1793.1at 1727.834 kb on - strand, within Xcc-8004.1793.1at 1727.834 kb on - strand, within Xcc-8004.1793.1at 1727.959 kb on + strand, within Xcc-8004.1793.1at 1727.959 kb on + strand, within Xcc-8004.1793.1

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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1,725,685 + +1.5
1,725,685 + -1.0
1,725,685 + +0.1
1,725,685 + +0.6
1,725,686 - +0.2
1,725,686 - -1.3
1,725,686 - -0.8
1,725,727 + -0.5
1,725,728 - -1.2
1,725,847 + +0.7
1,725,848 - -0.5
1,725,848 - -0.9
1,725,876 + -1.1
1,725,896 + -0.3
1,725,934 + Xcc-8004.1791.1 0.16 +0.3
1,725,934 + Xcc-8004.1791.1 0.16 -0.2
1,725,935 - Xcc-8004.1791.1 0.17 +0.2
1,725,935 - Xcc-8004.1791.1 0.17 -0.8
1,725,935 - Xcc-8004.1791.1 0.17 -1.4
1,725,948 + Xcc-8004.1791.1 0.21 -2.2
1,725,948 + Xcc-8004.1791.1 0.21 +0.1
1,725,948 + Xcc-8004.1791.1 0.21 -0.2
1,725,948 + Xcc-8004.1791.1 0.21 +0.2
1,725,948 + Xcc-8004.1791.1 0.21 +0.2
1,725,948 + Xcc-8004.1791.1 0.21 +0.1
1,725,948 + Xcc-8004.1791.1 0.21 +3.7
1,725,948 + Xcc-8004.1791.1 0.21 +1.1
1,725,949 - Xcc-8004.1791.1 0.22 +1.5
1,725,949 - Xcc-8004.1791.1 0.22 -1.1
1,725,949 - Xcc-8004.1791.1 0.22 +1.3
1,725,949 - Xcc-8004.1791.1 0.22 +2.2
1,725,952 + Xcc-8004.1791.1 0.23 +0.4
1,725,952 + Xcc-8004.1791.1 0.23 -0.5
1,725,952 + Xcc-8004.1791.1 0.23 -2.4
1,725,952 + Xcc-8004.1791.1 0.23 -1.0
1,725,952 + Xcc-8004.1791.1 0.23 +1.5
1,725,953 - Xcc-8004.1791.1 0.23 -1.5
1,725,953 - Xcc-8004.1791.1 0.23 -1.1
1,725,953 - Xcc-8004.1791.1 0.23 +0.4
1,725,975 + Xcc-8004.1791.1 0.31 +0.7
1,725,975 + Xcc-8004.1791.1 0.31 -1.3
1,725,975 + Xcc-8004.1791.1 0.31 +0.5
1,725,975 + Xcc-8004.1791.1 0.31 +2.0
1,725,975 + Xcc-8004.1791.1 0.31 +0.1
1,725,975 + Xcc-8004.1791.1 0.31 -0.9
1,725,975 + Xcc-8004.1791.1 0.31 +1.2
1,725,976 - Xcc-8004.1791.1 0.32 +0.4
1,725,976 - Xcc-8004.1791.1 0.32 -2.1
1,725,976 - Xcc-8004.1791.1 0.32 -0.1
1,725,976 - Xcc-8004.1791.1 0.32 -0.9
1,725,976 - Xcc-8004.1791.1 0.32 -0.7
1,725,976 - Xcc-8004.1791.1 0.32 -0.9
1,725,976 - Xcc-8004.1791.1 0.32 -0.4
1,725,976 - Xcc-8004.1791.1 0.32 +3.0
1,726,024 - Xcc-8004.1791.1 0.50 +1.2
1,726,024 - Xcc-8004.1791.1 0.50 +0.1
1,726,058 + Xcc-8004.1791.1 0.62 -0.6
1,726,059 - Xcc-8004.1791.1 0.63 +0.7
1,726,198 - -0.2
1,726,198 - +0.1
1,726,198 - +1.0
1,726,198 - +0.7
1,726,198 - -3.2
1,726,289 + -0.9
1,726,289 + -1.3
1,726,289 + +0.9
1,726,289 + -0.2
1,726,290 - +1.2
1,726,290 - -3.3
1,726,290 - -0.1
1,726,290 - +0.9
1,726,290 - +2.1
1,726,290 - +0.6
1,726,290 - +0.1
1,726,290 - +0.7
1,726,305 + -0.3
1,726,526 - Xcc-8004.1792.1 0.12 -2.1
1,726,526 - Xcc-8004.1792.1 0.12 -1.7
1,726,616 + Xcc-8004.1792.1 0.27 -4.5
1,726,616 + Xcc-8004.1792.1 0.27 -1.1
1,726,616 + Xcc-8004.1792.1 0.27 +0.7
1,726,616 + Xcc-8004.1792.1 0.27 -1.7
1,726,616 + Xcc-8004.1792.1 0.27 -1.3
1,726,616 + Xcc-8004.1792.1 0.27 -0.3
1,726,617 - Xcc-8004.1792.1 0.27 -2.3
1,726,617 - Xcc-8004.1792.1 0.27 +0.0
1,726,617 - Xcc-8004.1792.1 0.27 -1.7
1,726,617 - Xcc-8004.1792.1 0.27 -5.0
1,726,617 - Xcc-8004.1792.1 0.27 -0.8
1,726,617 - Xcc-8004.1792.1 0.27 -0.7
1,726,617 - Xcc-8004.1792.1 0.27 -1.4
1,726,617 - Xcc-8004.1792.1 0.27 -3.7
1,726,663 + Xcc-8004.1792.1 0.34 -0.9
1,726,664 - Xcc-8004.1792.1 0.34 -1.3
1,726,766 + Xcc-8004.1792.1 0.51 -1.8
1,726,766 + Xcc-8004.1792.1 0.51 +0.2
1,726,869 + Xcc-8004.1792.1 0.67 -1.6
1,726,874 - Xcc-8004.1792.1 0.68 +0.3
1,726,874 - Xcc-8004.1792.1 0.68 -1.1
1,726,930 + Xcc-8004.1792.1 0.77 -1.7
1,726,936 + Xcc-8004.1792.1 0.78 -0.8
1,726,937 - Xcc-8004.1792.1 0.78 -2.9
1,726,937 - Xcc-8004.1792.1 0.78 -2.4
1,727,081 + +0.1
1,727,081 + -0.8
1,727,081 + -0.8
1,727,082 - +2.5
1,727,082 - +2.2
1,727,082 - +0.8
1,727,091 + -0.5
1,727,091 + -0.5
1,727,091 + +0.1
1,727,092 - -0.3
1,727,092 - +0.0
1,727,092 - +0.5
1,727,092 - -1.5
1,727,095 + -0.5
1,727,096 - +0.5
1,727,097 + -0.3
1,727,271 + +0.4
1,727,384 - Xcc-8004.1793.1 0.15 +1.7
1,727,384 - Xcc-8004.1793.1 0.15 -2.1
1,727,399 + Xcc-8004.1793.1 0.17 -2.4
1,727,399 + Xcc-8004.1793.1 0.17 -2.1
1,727,399 + Xcc-8004.1793.1 0.17 +0.3
1,727,399 + Xcc-8004.1793.1 0.17 +0.2
1,727,399 + Xcc-8004.1793.1 0.17 +0.9
1,727,400 - Xcc-8004.1793.1 0.17 -1.0
1,727,400 - Xcc-8004.1793.1 0.17 -0.6
1,727,400 - Xcc-8004.1793.1 0.17 -1.8
1,727,476 + Xcc-8004.1793.1 0.23 +0.7
1,727,477 - Xcc-8004.1793.1 0.23 +1.5
1,727,497 + Xcc-8004.1793.1 0.25 -0.9
1,727,509 + Xcc-8004.1793.1 0.26 +1.7
1,727,510 - Xcc-8004.1793.1 0.26 +0.7
1,727,510 - Xcc-8004.1793.1 0.26 +0.5
1,727,510 - Xcc-8004.1793.1 0.26 -1.3
1,727,582 - Xcc-8004.1793.1 0.32 +1.3
1,727,582 - Xcc-8004.1793.1 0.32 -0.6
1,727,834 - Xcc-8004.1793.1 0.53 +0.3
1,727,834 - Xcc-8004.1793.1 0.53 +0.1
1,727,834 - Xcc-8004.1793.1 0.53 +2.1
1,727,834 - Xcc-8004.1793.1 0.53 -0.8
1,727,959 + Xcc-8004.1793.1 0.63 +0.3
1,727,959 + Xcc-8004.1793.1 0.63 +0.1

Or see this region's nucleotide sequence