Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1662.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1659.1 and Xcc-8004.1660.1 overlap by 4 nucleotidesXcc-8004.1660.1 and Xcc-8004.1661.1 are separated by 39 nucleotidesXcc-8004.1661.1 and Xcc-8004.1662.1 are separated by 87 nucleotidesXcc-8004.1662.1 and Xcc-8004.1663.1 are separated by 39 nucleotidesXcc-8004.1663.1 and Xcc-8004.1664.1 overlap by 1 nucleotides Xcc-8004.1659.1: Xcc-8004.1659.1 - HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-), at 1,598,815 to 1,599,765 Xcc-8004.1659.1 Xcc-8004.1660.1: Xcc-8004.1660.1 - PTS system nitrogen-specific IIA component, PtsN, at 1,599,762 to 1,600,202 Xcc-8004.1660.1 Xcc-8004.1661.1: Xcc-8004.1661.1 - Ribosome hibernation protein YhbH, at 1,600,242 to 1,600,559 Xcc-8004.1661.1 Xcc-8004.1662.1: Xcc-8004.1662.1 - RNA polymerase sigma-54 factor RpoN, at 1,600,647 to 1,602,083 Xcc-8004.1662.1 Xcc-8004.1663.1: Xcc-8004.1663.1 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 1,602,123 to 1,602,842 Xcc-8004.1663.1 Xcc-8004.1664.1: Xcc-8004.1664.1 - LptA, protein essential for LPS transport across the periplasm, at 1,602,842 to 1,603,378 Xcc-8004.1664.1 Position (kb) 1600 1601 1602 1603Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1599.652 kb on - strand, within Xcc-8004.1659.1at 1599.759 kb on + strandat 1599.759 kb on + strandat 1599.760 kb on - strandat 1599.789 kb on + strandat 1599.790 kb on - strandat 1599.911 kb on - strand, within Xcc-8004.1660.1at 1600.280 kb on + strand, within Xcc-8004.1661.1at 1600.281 kb on - strand, within Xcc-8004.1661.1at 1600.281 kb on - strand, within Xcc-8004.1661.1at 1600.504 kb on + strand, within Xcc-8004.1661.1at 1600.504 kb on + strand, within Xcc-8004.1661.1at 1600.504 kb on + strand, within Xcc-8004.1661.1at 1600.504 kb on + strand, within Xcc-8004.1661.1at 1600.504 kb on + strand, within Xcc-8004.1661.1at 1600.504 kb on + strand, within Xcc-8004.1661.1at 1600.505 kb on - strand, within Xcc-8004.1661.1at 1600.505 kb on - strand, within Xcc-8004.1661.1at 1600.505 kb on - strand, within Xcc-8004.1661.1at 1600.543 kb on + strandat 1600.543 kb on + strandat 1600.543 kb on + strandat 1600.543 kb on + strandat 1600.543 kb on + strandat 1600.543 kb on + strandat 1600.543 kb on + strandat 1600.544 kb on - strandat 1600.544 kb on - strandat 1600.544 kb on - strandat 1600.544 kb on - strandat 1600.544 kb on - strandat 1600.544 kb on - strandat 1600.544 kb on - strandat 1600.544 kb on - strandat 1600.544 kb on - strandat 1600.544 kb on - strandat 1600.544 kb on - strandat 1600.553 kb on + strandat 1600.565 kb on - strandat 1600.565 kb on - strandat 1600.620 kb on + strandat 1600.620 kb on + strandat 1600.620 kb on + strandat 1600.621 kb on - strandat 1600.699 kb on + strandat 1600.699 kb on + strandat 1600.699 kb on + strandat 1600.700 kb on - strandat 1600.700 kb on - strandat 1600.700 kb on - strandat 1600.915 kb on + strand, within Xcc-8004.1662.1at 1600.915 kb on + strand, within Xcc-8004.1662.1at 1600.916 kb on - strand, within Xcc-8004.1662.1at 1600.916 kb on - strand, within Xcc-8004.1662.1at 1600.916 kb on - strand, within Xcc-8004.1662.1at 1601.112 kb on + strand, within Xcc-8004.1662.1at 1601.112 kb on + strand, within Xcc-8004.1662.1at 1601.113 kb on - strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.262 kb on + strand, within Xcc-8004.1662.1at 1601.263 kb on - strand, within Xcc-8004.1662.1at 1601.263 kb on - strand, within Xcc-8004.1662.1at 1601.263 kb on - strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.266 kb on + strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1601.267 kb on - strand, within Xcc-8004.1662.1at 1602.009 kb on + strandat 1602.009 kb on + strandat 1602.010 kb on - strandat 1602.010 kb on - strandat 1602.010 kb on - strandat 1602.058 kb on - strandat 1602.058 kb on - strandat 1602.058 kb on - strandat 1602.092 kb on + strandat 1602.092 kb on + strandat 1602.092 kb on + strandat 1602.092 kb on + strandat 1602.092 kb on + strandat 1602.092 kb on + strandat 1602.093 kb on - strandat 1602.093 kb on - strandat 1602.093 kb on - strandat 1602.093 kb on - strandat 1602.093 kb on - strandat 1602.093 kb on - strandat 1602.105 kb on + strandat 1602.105 kb on + strandat 1602.105 kb on + strandat 1602.106 kb on - strandat 1602.106 kb on - strandat 1602.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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1,599,652 - Xcc-8004.1659.1 0.88 +0.8
1,599,759 + -0.2
1,599,759 + -2.0
1,599,760 - -1.7
1,599,789 + +0.8
1,599,790 - +1.0
1,599,911 - Xcc-8004.1660.1 0.34 -3.0
1,600,280 + Xcc-8004.1661.1 0.12 +0.5
1,600,281 - Xcc-8004.1661.1 0.12 -1.6
1,600,281 - Xcc-8004.1661.1 0.12 -0.6
1,600,504 + Xcc-8004.1661.1 0.82 +1.3
1,600,504 + Xcc-8004.1661.1 0.82 -0.5
1,600,504 + Xcc-8004.1661.1 0.82 -1.7
1,600,504 + Xcc-8004.1661.1 0.82 -1.0
1,600,504 + Xcc-8004.1661.1 0.82 +0.2
1,600,504 + Xcc-8004.1661.1 0.82 +1.0
1,600,505 - Xcc-8004.1661.1 0.83 +3.1
1,600,505 - Xcc-8004.1661.1 0.83 -1.0
1,600,505 - Xcc-8004.1661.1 0.83 -0.4
1,600,543 + +1.0
1,600,543 + +0.1
1,600,543 + -0.0
1,600,543 + +0.2
1,600,543 + +1.5
1,600,543 + +1.8
1,600,543 + -0.3
1,600,544 - +0.8
1,600,544 - +1.1
1,600,544 - +1.4
1,600,544 - -0.6
1,600,544 - +0.9
1,600,544 - -0.2
1,600,544 - -1.3
1,600,544 - +0.5
1,600,544 - -1.5
1,600,544 - -1.0
1,600,544 - +1.5
1,600,553 + -0.8
1,600,565 - -1.6
1,600,565 - +1.1
1,600,620 + +0.2
1,600,620 + -2.1
1,600,620 + -3.2
1,600,621 - -3.1
1,600,699 + -1.4
1,600,699 + -1.0
1,600,699 + -3.1
1,600,700 - -1.6
1,600,700 - -2.2
1,600,700 - -3.1
1,600,915 + Xcc-8004.1662.1 0.19 -2.2
1,600,915 + Xcc-8004.1662.1 0.19 -1.8
1,600,916 - Xcc-8004.1662.1 0.19 -1.6
1,600,916 - Xcc-8004.1662.1 0.19 -1.6
1,600,916 - Xcc-8004.1662.1 0.19 +0.2
1,601,112 + Xcc-8004.1662.1 0.32 -2.8
1,601,112 + Xcc-8004.1662.1 0.32 -0.2
1,601,113 - Xcc-8004.1662.1 0.32 -1.6
1,601,262 + Xcc-8004.1662.1 0.43 -1.8
1,601,262 + Xcc-8004.1662.1 0.43 +0.8
1,601,262 + Xcc-8004.1662.1 0.43 -1.3
1,601,262 + Xcc-8004.1662.1 0.43 -2.1
1,601,262 + Xcc-8004.1662.1 0.43 -1.4
1,601,262 + Xcc-8004.1662.1 0.43 +0.8
1,601,262 + Xcc-8004.1662.1 0.43 -1.4
1,601,263 - Xcc-8004.1662.1 0.43 -1.8
1,601,263 - Xcc-8004.1662.1 0.43 -0.7
1,601,263 - Xcc-8004.1662.1 0.43 -2.0
1,601,266 + Xcc-8004.1662.1 0.43 -2.7
1,601,266 + Xcc-8004.1662.1 0.43 -1.4
1,601,266 + Xcc-8004.1662.1 0.43 +0.4
1,601,266 + Xcc-8004.1662.1 0.43 -1.6
1,601,266 + Xcc-8004.1662.1 0.43 -0.4
1,601,266 + Xcc-8004.1662.1 0.43 -2.0
1,601,266 + Xcc-8004.1662.1 0.43 +0.4
1,601,266 + Xcc-8004.1662.1 0.43 -1.6
1,601,266 + Xcc-8004.1662.1 0.43 -0.2
1,601,266 + Xcc-8004.1662.1 0.43 -2.3
1,601,266 + Xcc-8004.1662.1 0.43 -3.9
1,601,266 + Xcc-8004.1662.1 0.43 -0.8
1,601,266 + Xcc-8004.1662.1 0.43 -2.4
1,601,266 + Xcc-8004.1662.1 0.43 -2.6
1,601,266 + Xcc-8004.1662.1 0.43 +1.8
1,601,266 + Xcc-8004.1662.1 0.43 -3.9
1,601,266 + Xcc-8004.1662.1 0.43 +0.6
1,601,266 + Xcc-8004.1662.1 0.43 -0.8
1,601,266 + Xcc-8004.1662.1 0.43 -3.3
1,601,266 + Xcc-8004.1662.1 0.43 +2.8
1,601,267 - Xcc-8004.1662.1 0.43 -2.7
1,601,267 - Xcc-8004.1662.1 0.43 -2.3
1,601,267 - Xcc-8004.1662.1 0.43 +0.3
1,601,267 - Xcc-8004.1662.1 0.43 -0.2
1,601,267 - Xcc-8004.1662.1 0.43 +0.8
1,601,267 - Xcc-8004.1662.1 0.43 +0.2
1,601,267 - Xcc-8004.1662.1 0.43 -2.4
1,601,267 - Xcc-8004.1662.1 0.43 -0.5
1,601,267 - Xcc-8004.1662.1 0.43 -1.2
1,601,267 - Xcc-8004.1662.1 0.43 -0.2
1,601,267 - Xcc-8004.1662.1 0.43 -1.8
1,601,267 - Xcc-8004.1662.1 0.43 -1.7
1,601,267 - Xcc-8004.1662.1 0.43 +0.8
1,601,267 - Xcc-8004.1662.1 0.43 -1.6
1,601,267 - Xcc-8004.1662.1 0.43 -1.4
1,601,267 - Xcc-8004.1662.1 0.43 +1.1
1,601,267 - Xcc-8004.1662.1 0.43 -1.6
1,601,267 - Xcc-8004.1662.1 0.43 -1.9
1,601,267 - Xcc-8004.1662.1 0.43 -2.0
1,601,267 - Xcc-8004.1662.1 0.43 -3.1
1,601,267 - Xcc-8004.1662.1 0.43 -1.6
1,601,267 - Xcc-8004.1662.1 0.43 +0.2
1,601,267 - Xcc-8004.1662.1 0.43 -1.0
1,601,267 - Xcc-8004.1662.1 0.43 -2.8
1,601,267 - Xcc-8004.1662.1 0.43 -0.2
1,601,267 - Xcc-8004.1662.1 0.43 +0.5
1,602,009 + -2.6
1,602,009 + -3.5
1,602,010 - +0.5
1,602,010 - -0.4
1,602,010 - +0.5
1,602,058 - -0.1
1,602,058 - +0.5
1,602,058 - -0.2
1,602,092 + +1.0
1,602,092 + -0.6
1,602,092 + +0.8
1,602,092 + -0.4
1,602,092 + -0.5
1,602,092 + +0.8
1,602,093 - +1.0
1,602,093 - -0.2
1,602,093 - +0.1
1,602,093 - -0.7
1,602,093 - +0.5
1,602,093 - +0.8
1,602,105 + +0.3
1,602,105 + -3.4
1,602,105 + -1.0
1,602,106 - +0.3
1,602,106 - +2.2
1,602,106 - +1.6

Or see this region's nucleotide sequence