Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1413.1

Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1411.1 and Xcc-8004.1413.1 are separated by 330 nucleotidesXcc-8004.1413.1 and Xcc-8004.1414.1 are separated by 275 nucleotidesXcc-8004.1414.1 and Xcc-8004.1415.1 are separated by 186 nucleotides Xcc-8004.1411.1: Xcc-8004.1411.1 - Outer membrane receptor proteins, mostly Fe transport, at 1,344,211 to 1,346,610 Xcc-8004.1411.1 Xcc-8004.1413.1: Xcc-8004.1413.1 - Outer membrane receptor proteins, mostly Fe transport, at 1,346,941 to 1,349,328 Xcc-8004.1413.1 Xcc-8004.1414.1: Xcc-8004.1414.1 - Lactoylglutathione lyase and related lyases, at 1,349,604 to 1,350,029 Xcc-8004.1414.1 Xcc-8004.1415.1: Xcc-8004.1415.1 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 1,350,216 to 1,352,597 Xcc-8004.1415.1 Position (kb) 1346 1347 1348 1349 1350Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1346.124 kb on - strand, within Xcc-8004.1411.1at 1346.228 kb on + strand, within Xcc-8004.1411.1at 1346.228 kb on + strand, within Xcc-8004.1411.1at 1346.228 kb on + strand, within Xcc-8004.1411.1at 1346.228 kb on + strand, within Xcc-8004.1411.1at 1346.228 kb on + strand, within Xcc-8004.1411.1at 1346.229 kb on - strand, within Xcc-8004.1411.1at 1346.229 kb on - strand, within Xcc-8004.1411.1at 1346.229 kb on - strand, within Xcc-8004.1411.1at 1346.229 kb on - strand, within Xcc-8004.1411.1at 1346.229 kb on - strand, within Xcc-8004.1411.1at 1346.253 kb on - strand, within Xcc-8004.1411.1at 1346.935 kb on - strandat 1346.935 kb on - strandat 1346.943 kb on - strandat 1346.943 kb on - strandat 1346.951 kb on + strandat 1346.952 kb on - strandat 1346.967 kb on - strandat 1346.967 kb on - strandat 1347.017 kb on + strandat 1347.018 kb on - strandat 1347.110 kb on + strandat 1347.146 kb on + strandat 1347.146 kb on + strandat 1347.146 kb on + strandat 1347.380 kb on + strand, within Xcc-8004.1413.1at 1347.381 kb on - strand, within Xcc-8004.1413.1at 1347.381 kb on - strand, within Xcc-8004.1413.1at 1347.386 kb on + strand, within Xcc-8004.1413.1at 1347.386 kb on + strand, within Xcc-8004.1413.1at 1347.386 kb on + strand, within Xcc-8004.1413.1at 1347.387 kb on - strand, within Xcc-8004.1413.1at 1347.432 kb on - strand, within Xcc-8004.1413.1at 1347.432 kb on - strand, within Xcc-8004.1413.1at 1347.485 kb on + strand, within Xcc-8004.1413.1at 1347.527 kb on + strand, within Xcc-8004.1413.1at 1347.527 kb on + strand, within Xcc-8004.1413.1at 1347.528 kb on - strand, within Xcc-8004.1413.1at 1347.528 kb on - strand, within Xcc-8004.1413.1at 1347.528 kb on - strand, within Xcc-8004.1413.1at 1347.532 kb on - strand, within Xcc-8004.1413.1at 1347.593 kb on + strand, within Xcc-8004.1413.1at 1347.610 kb on - strand, within Xcc-8004.1413.1at 1347.611 kb on + strand, within Xcc-8004.1413.1at 1347.611 kb on + strand, within Xcc-8004.1413.1at 1347.611 kb on + strand, within Xcc-8004.1413.1at 1347.611 kb on + strand, within Xcc-8004.1413.1at 1347.611 kb on + strand, within Xcc-8004.1413.1at 1347.611 kb on + strand, within Xcc-8004.1413.1at 1347.611 kb on + strand, within Xcc-8004.1413.1at 1347.612 kb on - strand, within Xcc-8004.1413.1at 1347.612 kb on - strand, within Xcc-8004.1413.1at 1347.612 kb on - strand, within Xcc-8004.1413.1at 1347.612 kb on - strand, within Xcc-8004.1413.1at 1347.651 kb on - strand, within Xcc-8004.1413.1at 1347.651 kb on - strand, within Xcc-8004.1413.1at 1347.871 kb on + strand, within Xcc-8004.1413.1at 1347.923 kb on + strand, within Xcc-8004.1413.1at 1347.923 kb on + strand, within Xcc-8004.1413.1at 1347.924 kb on - strand, within Xcc-8004.1413.1at 1347.989 kb on + strand, within Xcc-8004.1413.1at 1348.013 kb on + strand, within Xcc-8004.1413.1at 1348.014 kb on - strand, within Xcc-8004.1413.1at 1348.014 kb on - strand, within Xcc-8004.1413.1at 1348.014 kb on - strand, within Xcc-8004.1413.1at 1348.246 kb on - strand, within Xcc-8004.1413.1at 1348.279 kb on + strand, within Xcc-8004.1413.1at 1348.280 kb on - strand, within Xcc-8004.1413.1at 1348.331 kb on + strand, within Xcc-8004.1413.1at 1348.331 kb on + strand, within Xcc-8004.1413.1at 1348.331 kb on + strand, within Xcc-8004.1413.1at 1348.332 kb on - strand, within Xcc-8004.1413.1at 1348.332 kb on - strand, within Xcc-8004.1413.1at 1348.337 kb on + strand, within Xcc-8004.1413.1at 1348.415 kb on + strand, within Xcc-8004.1413.1at 1348.416 kb on - strand, within Xcc-8004.1413.1at 1348.416 kb on - strand, within Xcc-8004.1413.1at 1348.416 kb on - strand, within Xcc-8004.1413.1at 1348.416 kb on - strand, within Xcc-8004.1413.1at 1348.530 kb on - strand, within Xcc-8004.1413.1at 1348.530 kb on - strand, within Xcc-8004.1413.1at 1348.556 kb on + strand, within Xcc-8004.1413.1at 1348.557 kb on - strand, within Xcc-8004.1413.1at 1348.557 kb on - strand, within Xcc-8004.1413.1at 1348.730 kb on + strand, within Xcc-8004.1413.1at 1348.754 kb on + strand, within Xcc-8004.1413.1at 1348.842 kb on - strand, within Xcc-8004.1413.1at 1348.842 kb on - strand, within Xcc-8004.1413.1at 1348.867 kb on + strand, within Xcc-8004.1413.1at 1348.867 kb on + strand, within Xcc-8004.1413.1at 1348.867 kb on + strand, within Xcc-8004.1413.1at 1349.467 kb on + strandat 1349.467 kb on + strandat 1349.467 kb on + strandat 1349.468 kb on - strandat 1349.468 kb on - strandat 1349.488 kb on + strandat 1349.582 kb on + strandat 1349.582 kb on + strandat 1349.583 kb on - strandat 1349.589 kb on + strandat 1349.589 kb on + strandat 1349.590 kb on - strandat 1349.609 kb on - strandat 1349.705 kb on - strand, within Xcc-8004.1414.1at 1350.062 kb on + strandat 1350.062 kb on + strandat 1350.062 kb on + strandat 1350.063 kb on - strandat 1350.063 kb on - strandat 1350.169 kb on + strandat 1350.170 kb on - strandat 1350.205 kb on + strandat 1350.206 kb on - strandat 1350.218 kb on - strandat 1350.227 kb on - strandat 1350.227 kb on - strandat 1350.248 kb on - strandat 1350.248 kb on - strandat 1350.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
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1,346,124 - Xcc-8004.1411.1 0.80 +2.7
1,346,228 + Xcc-8004.1411.1 0.84 +1.4
1,346,228 + Xcc-8004.1411.1 0.84 +0.7
1,346,228 + Xcc-8004.1411.1 0.84 -0.5
1,346,228 + Xcc-8004.1411.1 0.84 -2.6
1,346,228 + Xcc-8004.1411.1 0.84 -1.4
1,346,229 - Xcc-8004.1411.1 0.84 +1.2
1,346,229 - Xcc-8004.1411.1 0.84 -0.6
1,346,229 - Xcc-8004.1411.1 0.84 -0.5
1,346,229 - Xcc-8004.1411.1 0.84 +0.6
1,346,229 - Xcc-8004.1411.1 0.84 +0.2
1,346,253 - Xcc-8004.1411.1 0.85 -1.3
1,346,935 - -0.9
1,346,935 - +0.4
1,346,943 - -0.3
1,346,943 - +0.9
1,346,951 + -1.8
1,346,952 - -0.9
1,346,967 - -0.3
1,346,967 - +0.7
1,347,017 + -2.3
1,347,018 - -1.4
1,347,110 + +0.7
1,347,146 + +1.7
1,347,146 + +1.7
1,347,146 + -1.2
1,347,380 + Xcc-8004.1413.1 0.18 -3.3
1,347,381 - Xcc-8004.1413.1 0.18 -3.4
1,347,381 - Xcc-8004.1413.1 0.18 -1.3
1,347,386 + Xcc-8004.1413.1 0.19 -1.6
1,347,386 + Xcc-8004.1413.1 0.19 -0.6
1,347,386 + Xcc-8004.1413.1 0.19 -0.3
1,347,387 - Xcc-8004.1413.1 0.19 -2.2
1,347,432 - Xcc-8004.1413.1 0.21 -3.0
1,347,432 - Xcc-8004.1413.1 0.21 -3.0
1,347,485 + Xcc-8004.1413.1 0.23 -3.7
1,347,527 + Xcc-8004.1413.1 0.25 -2.8
1,347,527 + Xcc-8004.1413.1 0.25 -1.0
1,347,528 - Xcc-8004.1413.1 0.25 +0.7
1,347,528 - Xcc-8004.1413.1 0.25 -3.3
1,347,528 - Xcc-8004.1413.1 0.25 -1.3
1,347,532 - Xcc-8004.1413.1 0.25 -2.4
1,347,593 + Xcc-8004.1413.1 0.27 -4.8
1,347,610 - Xcc-8004.1413.1 0.28 -1.6
1,347,611 + Xcc-8004.1413.1 0.28 -1.6
1,347,611 + Xcc-8004.1413.1 0.28 -1.6
1,347,611 + Xcc-8004.1413.1 0.28 -2.3
1,347,611 + Xcc-8004.1413.1 0.28 -2.2
1,347,611 + Xcc-8004.1413.1 0.28 -1.4
1,347,611 + Xcc-8004.1413.1 0.28 -2.6
1,347,611 + Xcc-8004.1413.1 0.28 -3.8
1,347,612 - Xcc-8004.1413.1 0.28 -1.1
1,347,612 - Xcc-8004.1413.1 0.28 -2.8
1,347,612 - Xcc-8004.1413.1 0.28 -2.5
1,347,612 - Xcc-8004.1413.1 0.28 -0.8
1,347,651 - Xcc-8004.1413.1 0.30 +0.3
1,347,651 - Xcc-8004.1413.1 0.30 -1.1
1,347,871 + Xcc-8004.1413.1 0.39 -0.4
1,347,923 + Xcc-8004.1413.1 0.41 +0.0
1,347,923 + Xcc-8004.1413.1 0.41 -2.3
1,347,924 - Xcc-8004.1413.1 0.41 +0.7
1,347,989 + Xcc-8004.1413.1 0.44 +0.3
1,348,013 + Xcc-8004.1413.1 0.45 -0.8
1,348,014 - Xcc-8004.1413.1 0.45 -1.4
1,348,014 - Xcc-8004.1413.1 0.45 -1.6
1,348,014 - Xcc-8004.1413.1 0.45 +2.3
1,348,246 - Xcc-8004.1413.1 0.55 -1.9
1,348,279 + Xcc-8004.1413.1 0.56 -0.8
1,348,280 - Xcc-8004.1413.1 0.56 -1.9
1,348,331 + Xcc-8004.1413.1 0.58 -0.3
1,348,331 + Xcc-8004.1413.1 0.58 -1.0
1,348,331 + Xcc-8004.1413.1 0.58 -2.8
1,348,332 - Xcc-8004.1413.1 0.58 +0.0
1,348,332 - Xcc-8004.1413.1 0.58 -3.7
1,348,337 + Xcc-8004.1413.1 0.58 +0.2
1,348,415 + Xcc-8004.1413.1 0.62 -0.4
1,348,416 - Xcc-8004.1413.1 0.62 -1.4
1,348,416 - Xcc-8004.1413.1 0.62 +0.0
1,348,416 - Xcc-8004.1413.1 0.62 -1.3
1,348,416 - Xcc-8004.1413.1 0.62 -0.1
1,348,530 - Xcc-8004.1413.1 0.67 +1.2
1,348,530 - Xcc-8004.1413.1 0.67 -0.8
1,348,556 + Xcc-8004.1413.1 0.68 -0.8
1,348,557 - Xcc-8004.1413.1 0.68 -1.3
1,348,557 - Xcc-8004.1413.1 0.68 -2.6
1,348,730 + Xcc-8004.1413.1 0.75 -3.1
1,348,754 + Xcc-8004.1413.1 0.76 -0.6
1,348,842 - Xcc-8004.1413.1 0.80 -1.1
1,348,842 - Xcc-8004.1413.1 0.80 -2.1
1,348,867 + Xcc-8004.1413.1 0.81 -1.8
1,348,867 + Xcc-8004.1413.1 0.81 +0.7
1,348,867 + Xcc-8004.1413.1 0.81 -3.4
1,349,467 + -1.1
1,349,467 + +1.3
1,349,467 + -0.3
1,349,468 - -1.5
1,349,468 - +0.3
1,349,488 + -0.5
1,349,582 + -3.3
1,349,582 + -0.3
1,349,583 - -2.1
1,349,589 + +0.4
1,349,589 + -1.6
1,349,590 - -0.7
1,349,609 - -2.9
1,349,705 - Xcc-8004.1414.1 0.24 -1.8
1,350,062 + -0.5
1,350,062 + -0.6
1,350,062 + -1.1
1,350,063 - -2.1
1,350,063 - -1.3
1,350,169 + +1.3
1,350,170 - -1.3
1,350,205 + -2.5
1,350,206 - -1.8
1,350,218 - -0.3
1,350,227 - +2.7
1,350,227 - -0.3
1,350,248 - -2.3
1,350,248 - +0.3
1,350,248 - +1.0

Or see this region's nucleotide sequence