Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.123.1 and Xcc-8004.125.1 are separated by 127 nucleotides Xcc-8004.125.1 and Xcc-8004.127.1 are separated by 268 nucleotides Xcc-8004.127.1 and Xcc-8004.129.1 are separated by 51 nucleotides Xcc-8004.129.1 and Xcc-8004.130.1 are separated by 14 nucleotides
Xcc-8004.123.1: Xcc-8004.123.1 - TldD family protein, Actinobacterial subgroup, at 114,024 to 115,685
Xcc-8004.123.1
Xcc-8004.125.1: Xcc-8004.125.1 - hypothetical protein, at 115,813 to 116,373
Xcc-8004.125.1
Xcc-8004.127.1: Xcc-8004.127.1 - Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11), at 116,642 to 117,658
Xcc-8004.127.1
Xcc-8004.129.1: Xcc-8004.129.1 - hypothetical protein, at 117,710 to 117,820
Xcc-8004.129.1
Xcc-8004.130.1: Xcc-8004.130.1 - hypothetical protein, at 117,835 to 119,037
Xcc-8004.130.1
Position (kb) 116
117
118 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 115.708 kb on - strand at 115.708 kb on - strand at 115.708 kb on - strand at 115.732 kb on + strand at 115.732 kb on + strand at 115.732 kb on + strand at 115.732 kb on + strand at 115.733 kb on - strand at 115.733 kb on - strand at 115.762 kb on + strand at 115.763 kb on - strand at 115.768 kb on + strand at 115.768 kb on + strand at 115.769 kb on - strand at 115.771 kb on + strand at 115.772 kb on - strand at 115.843 kb on + strand at 115.843 kb on + strand at 115.843 kb on + strand at 115.844 kb on - strand at 115.844 kb on - strand at 115.844 kb on - strand at 115.871 kb on + strand, within Xcc-8004.125.1 at 115.901 kb on + strand, within Xcc-8004.125.1 at 115.917 kb on + strand, within Xcc-8004.125.1 at 115.918 kb on - strand, within Xcc-8004.125.1 at 115.918 kb on - strand, within Xcc-8004.125.1 at 115.918 kb on - strand, within Xcc-8004.125.1 at 115.925 kb on + strand, within Xcc-8004.125.1 at 115.929 kb on + strand, within Xcc-8004.125.1 at 115.929 kb on + strand, within Xcc-8004.125.1 at 115.929 kb on + strand, within Xcc-8004.125.1 at 115.930 kb on - strand, within Xcc-8004.125.1 at 115.930 kb on - strand, within Xcc-8004.125.1 at 115.986 kb on - strand, within Xcc-8004.125.1 at 115.986 kb on - strand, within Xcc-8004.125.1 at 116.124 kb on - strand, within Xcc-8004.125.1 at 116.124 kb on - strand, within Xcc-8004.125.1 at 116.138 kb on - strand, within Xcc-8004.125.1 at 116.138 kb on - strand, within Xcc-8004.125.1 at 116.138 kb on - strand, within Xcc-8004.125.1 at 116.138 kb on - strand, within Xcc-8004.125.1 at 116.138 kb on - strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.206 kb on + strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.207 kb on - strand, within Xcc-8004.125.1 at 116.243 kb on + strand, within Xcc-8004.125.1 at 116.243 kb on + strand, within Xcc-8004.125.1 at 116.243 kb on + strand, within Xcc-8004.125.1 at 116.243 kb on + strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.244 kb on - strand, within Xcc-8004.125.1 at 116.260 kb on + strand, within Xcc-8004.125.1 at 116.261 kb on - strand, within Xcc-8004.125.1 at 116.330 kb on + strand at 116.330 kb on + strand at 116.330 kb on + strand at 116.331 kb on - strand at 116.368 kb on - strand at 116.378 kb on + strand at 116.378 kb on + strand at 116.378 kb on + strand at 116.378 kb on + strand at 116.378 kb on + strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.379 kb on - strand at 116.381 kb on + strand at 116.381 kb on + strand at 116.381 kb on + strand at 116.382 kb on - strand at 116.382 kb on - strand at 116.382 kb on - strand at 116.385 kb on + strand at 116.385 kb on + strand at 116.385 kb on + strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.386 kb on - strand at 116.392 kb on + strand at 116.392 kb on + strand at 116.393 kb on - strand at 116.393 kb on - strand at 116.393 kb on - strand at 116.393 kb on - strand at 116.399 kb on + strand at 116.400 kb on - strand at 116.406 kb on + strand at 116.406 kb on + strand at 116.407 kb on - strand at 116.407 kb on - strand at 116.413 kb on + strand at 116.413 kb on + strand at 116.413 kb on + strand at 116.414 kb on - strand at 116.414 kb on - strand at 116.414 kb on - strand at 116.414 kb on - strand at 116.432 kb on + strand at 116.433 kb on - strand at 116.451 kb on + strand at 116.451 kb on + strand at 116.451 kb on + strand at 116.452 kb on - strand at 116.452 kb on - strand at 116.550 kb on - strand at 116.594 kb on + strand at 116.594 kb on + strand at 116.594 kb on + strand at 116.594 kb on + strand at 116.594 kb on + strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.595 kb on - strand at 116.613 kb on + strand at 116.614 kb on - strand at 116.614 kb on - strand at 116.618 kb on + strand at 116.619 kb on - strand at 116.878 kb on - strand, within Xcc-8004.127.1 at 116.997 kb on + strand, within Xcc-8004.127.1 at 116.998 kb on - strand, within Xcc-8004.127.1 at 116.998 kb on - strand, within Xcc-8004.127.1 at 117.152 kb on + strand, within Xcc-8004.127.1 at 117.152 kb on + strand, within Xcc-8004.127.1 at 117.175 kb on - strand, within Xcc-8004.127.1 at 117.711 kb on + strand at 117.872 kb on + strand at 117.873 kb on - strand at 117.873 kb on - strand at 117.930 kb on - strand at 117.930 kb on - strand at 117.930 kb on - strand at 117.983 kb on + strand, within Xcc-8004.130.1 at 118.277 kb on + strand, within Xcc-8004.130.1 at 118.277 kb on + strand, within Xcc-8004.130.1 at 118.278 kb on - strand, within Xcc-8004.130.1 at 118.278 kb on - strand, within Xcc-8004.130.1 at 118.298 kb on + strand, within Xcc-8004.130.1 at 118.298 kb on + strand, within Xcc-8004.130.1 at 118.299 kb on - strand, within Xcc-8004.130.1 at 118.299 kb on - strand, within Xcc-8004.130.1 at 118.299 kb on - strand, within Xcc-8004.130.1 at 118.299 kb on - strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.316 kb on + strand, within Xcc-8004.130.1 at 118.317 kb on - strand, within Xcc-8004.130.1 at 118.317 kb on - strand, within Xcc-8004.130.1 at 118.356 kb on - strand, within Xcc-8004.130.1 at 118.391 kb on + strand, within Xcc-8004.130.1 at 118.391 kb on + strand, within Xcc-8004.130.1 at 118.586 kb on + strand, within Xcc-8004.130.1 at 118.586 kb on + strand, within Xcc-8004.130.1 at 118.586 kb on + strand, within Xcc-8004.130.1 at 118.587 kb on - strand, within Xcc-8004.130.1 at 118.587 kb on - strand, within Xcc-8004.130.1 at 118.587 kb on - strand, within Xcc-8004.130.1 at 118.587 kb on - strand, within Xcc-8004.130.1 at 118.587 kb on - strand, within Xcc-8004.130.1 at 118.592 kb on + strand, within Xcc-8004.130.1 at 118.592 kb on + strand, within Xcc-8004.130.1 at 118.592 kb on + strand, within Xcc-8004.130.1 at 118.593 kb on - strand, within Xcc-8004.130.1 at 118.593 kb on - strand, within Xcc-8004.130.1 at 118.593 kb on - strand, within Xcc-8004.130.1 at 118.593 kb on - strand, within Xcc-8004.130.1 at 118.593 kb on - strand, within Xcc-8004.130.1
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 115,708 - -2.6 115,708 - +1.1 115,708 - +1.2 115,732 + +0.1 115,732 + -0.5 115,732 + +0.1 115,732 + +0.4 115,733 - -0.1 115,733 - +0.6 115,762 + -1.3 115,763 - +0.1 115,768 + -0.7 115,768 + -0.6 115,769 - +0.7 115,771 + +0.4 115,772 - +0.5 115,843 + -0.9 115,843 + +1.1 115,843 + +1.4 115,844 - +0.0 115,844 - -0.5 115,844 - +1.2 115,871 + Xcc-8004.125.1 0.10 +1.3 115,901 + Xcc-8004.125.1 0.16 -1.3 115,917 + Xcc-8004.125.1 0.19 -0.3 115,918 - Xcc-8004.125.1 0.19 +0.5 115,918 - Xcc-8004.125.1 0.19 -0.4 115,918 - Xcc-8004.125.1 0.19 -1.9 115,925 + Xcc-8004.125.1 0.20 -0.6 115,929 + Xcc-8004.125.1 0.21 -1.0 115,929 + Xcc-8004.125.1 0.21 +2.5 115,929 + Xcc-8004.125.1 0.21 +1.6 115,930 - Xcc-8004.125.1 0.21 -2.0 115,930 - Xcc-8004.125.1 0.21 +0.5 115,986 - Xcc-8004.125.1 0.31 +3.4 115,986 - Xcc-8004.125.1 0.31 +1.2 116,124 - Xcc-8004.125.1 0.55 -1.5 116,124 - Xcc-8004.125.1 0.55 +1.7 116,138 - Xcc-8004.125.1 0.58 -1.1 116,138 - Xcc-8004.125.1 0.58 -3.1 116,138 - Xcc-8004.125.1 0.58 -1.3 116,138 - Xcc-8004.125.1 0.58 -0.0 116,138 - Xcc-8004.125.1 0.58 +0.7 116,206 + Xcc-8004.125.1 0.70 +0.4 116,206 + Xcc-8004.125.1 0.70 -1.3 116,206 + Xcc-8004.125.1 0.70 -2.7 116,206 + Xcc-8004.125.1 0.70 -1.0 116,206 + Xcc-8004.125.1 0.70 +0.7 116,206 + Xcc-8004.125.1 0.70 -0.2 116,206 + Xcc-8004.125.1 0.70 +0.1 116,206 + Xcc-8004.125.1 0.70 -1.0 116,206 + Xcc-8004.125.1 0.70 +0.1 116,206 + Xcc-8004.125.1 0.70 +1.2 116,207 - Xcc-8004.125.1 0.70 -0.9 116,207 - Xcc-8004.125.1 0.70 -0.3 116,207 - Xcc-8004.125.1 0.70 +1.3 116,207 - Xcc-8004.125.1 0.70 +0.7 116,207 - Xcc-8004.125.1 0.70 -1.3 116,207 - Xcc-8004.125.1 0.70 -2.4 116,207 - Xcc-8004.125.1 0.70 +2.5 116,207 - Xcc-8004.125.1 0.70 +0.3 116,207 - Xcc-8004.125.1 0.70 -0.9 116,243 + Xcc-8004.125.1 0.77 +0.1 116,243 + Xcc-8004.125.1 0.77 +1.7 116,243 + Xcc-8004.125.1 0.77 +3.5 116,243 + Xcc-8004.125.1 0.77 +0.4 116,244 - Xcc-8004.125.1 0.77 +0.7 116,244 - Xcc-8004.125.1 0.77 +1.3 116,244 - Xcc-8004.125.1 0.77 -0.6 116,244 - Xcc-8004.125.1 0.77 +0.7 116,244 - Xcc-8004.125.1 0.77 -0.7 116,244 - Xcc-8004.125.1 0.77 +3.6 116,244 - Xcc-8004.125.1 0.77 +2.4 116,260 + Xcc-8004.125.1 0.80 -2.3 116,261 - Xcc-8004.125.1 0.80 +0.5 116,330 + +0.9 116,330 + +2.0 116,330 + +1.0 116,331 - +0.8 116,368 - +4.3 116,378 + -0.9 116,378 + +0.3 116,378 + +0.7 116,378 + +0.3 116,378 + +1.1 116,379 - +1.4 116,379 - -0.4 116,379 - +0.1 116,379 - -2.3 116,379 - -0.5 116,379 - +0.3 116,379 - -0.6 116,379 - +1.1 116,381 + -0.1 116,381 + +0.0 116,381 + +0.0 116,382 - -0.3 116,382 - -0.9 116,382 - +0.3 116,385 + +2.3 116,385 + +2.2 116,385 + -1.9 116,386 - +0.2 116,386 - -1.2 116,386 - -0.3 116,386 - -0.7 116,386 - -1.2 116,386 - +1.1 116,386 - -0.8 116,392 + +0.1 116,392 + +1.6 116,393 - +0.1 116,393 - +0.3 116,393 - +1.0 116,393 - -0.0 116,399 + +0.2 116,400 - -0.7 116,406 + -0.1 116,406 + +0.9 116,407 - +2.0 116,407 - +0.3 116,413 + +0.9 116,413 + +1.1 116,413 + -0.9 116,414 - +0.4 116,414 - -0.3 116,414 - +1.3 116,414 - +0.3 116,432 + +2.3 116,433 - +0.7 116,451 + -0.7 116,451 + -2.1 116,451 + +1.1 116,452 - +0.1 116,452 - -0.0 116,550 - -1.9 116,594 + +0.7 116,594 + -0.9 116,594 + -1.6 116,594 + -2.7 116,594 + +1.9 116,595 - +0.6 116,595 - -0.3 116,595 - -2.6 116,595 - -1.0 116,595 - +0.6 116,595 - -1.6 116,595 - +2.1 116,595 - +1.7 116,613 + +1.2 116,614 - -0.2 116,614 - +1.7 116,618 + +0.1 116,619 - +0.2 116,878 - Xcc-8004.127.1 0.23 -2.4 116,997 + Xcc-8004.127.1 0.35 +0.7 116,998 - Xcc-8004.127.1 0.35 -0.3 116,998 - Xcc-8004.127.1 0.35 -2.3 117,152 + Xcc-8004.127.1 0.50 -2.1 117,152 + Xcc-8004.127.1 0.50 +0.7 117,175 - Xcc-8004.127.1 0.52 -1.9 117,711 + +2.0 117,872 + -1.6 117,873 - +1.0 117,873 - -3.2 117,930 - -0.9 117,930 - -2.4 117,930 - -2.4 117,983 + Xcc-8004.130.1 0.12 -2.1 118,277 + Xcc-8004.130.1 0.37 -2.4 118,277 + Xcc-8004.130.1 0.37 -3.0 118,278 - Xcc-8004.130.1 0.37 -1.9 118,278 - Xcc-8004.130.1 0.37 -1.3 118,298 + Xcc-8004.130.1 0.38 -0.3 118,298 + Xcc-8004.130.1 0.38 -1.9 118,299 - Xcc-8004.130.1 0.39 -2.4 118,299 - Xcc-8004.130.1 0.39 -2.7 118,299 - Xcc-8004.130.1 0.39 -1.6 118,299 - Xcc-8004.130.1 0.39 -1.6 118,316 + Xcc-8004.130.1 0.40 -0.3 118,316 + Xcc-8004.130.1 0.40 -2.4 118,316 + Xcc-8004.130.1 0.40 -1.3 118,316 + Xcc-8004.130.1 0.40 -3.2 118,316 + Xcc-8004.130.1 0.40 -1.6 118,316 + Xcc-8004.130.1 0.40 -0.3 118,317 - Xcc-8004.130.1 0.40 -1.1 118,317 - Xcc-8004.130.1 0.40 -3.8 118,356 - Xcc-8004.130.1 0.43 -2.6 118,391 + Xcc-8004.130.1 0.46 -2.1 118,391 + Xcc-8004.130.1 0.46 +0.7 118,586 + Xcc-8004.130.1 0.62 -1.9 118,586 + Xcc-8004.130.1 0.62 -2.3 118,586 + Xcc-8004.130.1 0.62 -1.3 118,587 - Xcc-8004.130.1 0.63 -0.3 118,587 - Xcc-8004.130.1 0.63 -0.8 118,587 - Xcc-8004.130.1 0.63 -0.3 118,587 - Xcc-8004.130.1 0.63 -2.9 118,587 - Xcc-8004.130.1 0.63 -0.9 118,592 + Xcc-8004.130.1 0.63 -0.9 118,592 + Xcc-8004.130.1 0.63 -0.9 118,592 + Xcc-8004.130.1 0.63 -2.1 118,593 - Xcc-8004.130.1 0.63 -1.3 118,593 - Xcc-8004.130.1 0.63 -0.0 118,593 - Xcc-8004.130.1 0.63 -2.4 118,593 - Xcc-8004.130.1 0.63 -1.3 118,593 - Xcc-8004.130.1 0.63 -2.1
Or see this region's nucleotide sequence