Experiment: 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1023.1 and Xcc-8004.1026.1 are separated by 221 nucleotides Xcc-8004.1026.1 and Xcc-8004.1027.1 overlap by 8 nucleotides Xcc-8004.1027.1 and Xcc-8004.1028.1 overlap by 1 nucleotides
Xcc-8004.1023.1: Xcc-8004.1023.1 - Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO, at 970,579 to 971,772
Xcc-8004.1023.1
Xcc-8004.1026.1: Xcc-8004.1026.1 - Tricarboxylate transport transcriptional regulator TctD, at 971,994 to 972,740
Xcc-8004.1026.1
Xcc-8004.1027.1: Xcc-8004.1027.1 - Two-component system sensor protein, at 972,733 to 974,118
Xcc-8004.1027.1
Xcc-8004.1028.1: Xcc-8004.1028.1 - Sensor protein PhoQ (EC 2.7.13.3), at 974,118 to 975,167
Xcc-8004.1028.1
Position (kb) 972
973
974
975 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 971.786 kb on + strand at 971.786 kb on + strand at 971.786 kb on + strand at 971.786 kb on + strand at 971.786 kb on + strand at 971.786 kb on + strand at 971.786 kb on + strand at 971.786 kb on + strand at 971.787 kb on - strand at 971.787 kb on - strand at 971.787 kb on - strand at 971.787 kb on - strand at 971.787 kb on - strand at 972.330 kb on + strand, within Xcc-8004.1026.1 at 972.331 kb on - strand, within Xcc-8004.1026.1 at 972.415 kb on + strand, within Xcc-8004.1026.1 at 972.501 kb on + strand, within Xcc-8004.1026.1 at 972.502 kb on - strand, within Xcc-8004.1026.1 at 972.616 kb on - strand, within Xcc-8004.1026.1 at 972.616 kb on - strand, within Xcc-8004.1026.1 at 972.784 kb on + strand at 972.784 kb on + strand at 972.784 kb on + strand at 972.784 kb on + strand at 972.868 kb on + strand at 972.869 kb on - strand at 973.105 kb on + strand, within Xcc-8004.1027.1 at 973.602 kb on + strand, within Xcc-8004.1027.1 at 973.603 kb on - strand, within Xcc-8004.1027.1 at 974.337 kb on + strand, within Xcc-8004.1028.1 at 974.337 kb on + strand, within Xcc-8004.1028.1 at 974.338 kb on - strand, within Xcc-8004.1028.1 at 974.536 kb on - strand, within Xcc-8004.1028.1 at 974.636 kb on + strand, within Xcc-8004.1028.1 at 974.637 kb on - strand, within Xcc-8004.1028.1 at 974.640 kb on + strand, within Xcc-8004.1028.1 at 974.640 kb on + strand, within Xcc-8004.1028.1 at 974.640 kb on + strand, within Xcc-8004.1028.1 at 974.641 kb on - strand, within Xcc-8004.1028.1 at 974.641 kb on - strand, within Xcc-8004.1028.1 at 974.808 kb on + strand, within Xcc-8004.1028.1 at 974.808 kb on + strand, within Xcc-8004.1028.1 at 974.809 kb on - strand, within Xcc-8004.1028.1 at 974.809 kb on - strand, within Xcc-8004.1028.1 at 974.809 kb on - strand, within Xcc-8004.1028.1 at 974.811 kb on - strand, within Xcc-8004.1028.1 at 974.826 kb on + strand, within Xcc-8004.1028.1 at 974.883 kb on + strand, within Xcc-8004.1028.1 at 974.884 kb on - strand, within Xcc-8004.1028.1 at 974.884 kb on - strand, within Xcc-8004.1028.1 at 974.884 kb on - strand, within Xcc-8004.1028.1 at 975.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) remove 971,786 + -0.1 971,786 + -0.2 971,786 + +0.7 971,786 + +0.8 971,786 + +2.1 971,786 + -3.6 971,786 + -0.2 971,786 + -1.6 971,787 - -0.1 971,787 - +2.8 971,787 - -0.0 971,787 - -1.1 971,787 - -1.6 972,330 + Xcc-8004.1026.1 0.45 -2.0 972,331 - Xcc-8004.1026.1 0.45 +2.2 972,415 + Xcc-8004.1026.1 0.56 -1.2 972,501 + Xcc-8004.1026.1 0.68 -0.8 972,502 - Xcc-8004.1026.1 0.68 +0.8 972,616 - Xcc-8004.1026.1 0.83 -1.9 972,616 - Xcc-8004.1026.1 0.83 +0.7 972,784 + -0.2 972,784 + +2.3 972,784 + -0.6 972,784 + -0.7 972,868 + +3.3 972,869 - -2.0 973,105 + Xcc-8004.1027.1 0.27 -2.8 973,602 + Xcc-8004.1027.1 0.63 -0.4 973,603 - Xcc-8004.1027.1 0.63 -2.7 974,337 + Xcc-8004.1028.1 0.21 -1.0 974,337 + Xcc-8004.1028.1 0.21 -1.8 974,338 - Xcc-8004.1028.1 0.21 +0.2 974,536 - Xcc-8004.1028.1 0.40 -1.9 974,636 + Xcc-8004.1028.1 0.49 -0.2 974,637 - Xcc-8004.1028.1 0.49 -2.0 974,640 + Xcc-8004.1028.1 0.50 -2.8 974,640 + Xcc-8004.1028.1 0.50 -0.8 974,640 + Xcc-8004.1028.1 0.50 -0.2 974,641 - Xcc-8004.1028.1 0.50 -2.4 974,641 - Xcc-8004.1028.1 0.50 -0.9 974,808 + Xcc-8004.1028.1 0.66 -1.2 974,808 + Xcc-8004.1028.1 0.66 -1.1 974,809 - Xcc-8004.1028.1 0.66 -1.8 974,809 - Xcc-8004.1028.1 0.66 +0.2 974,809 - Xcc-8004.1028.1 0.66 -0.7 974,811 - Xcc-8004.1028.1 0.66 -2.4 974,826 + Xcc-8004.1028.1 0.67 -1.6 974,883 + Xcc-8004.1028.1 0.73 -0.1 974,884 - Xcc-8004.1028.1 0.73 -3.3 974,884 - Xcc-8004.1028.1 0.73 -0.7 974,884 - Xcc-8004.1028.1 0.73 -2.3 975,099 + -1.1
Or see this region's nucleotide sequence