Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS18055

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
3,940,419	+		LRK54_RS18050	0.17	+0.4
3,940,419	+		LRK54_RS18050	0.17	-1.0
3,940,419	+		LRK54_RS18050	0.17	+0.6
3,940,419	+		LRK54_RS18050	0.17	-2.0
3,940,419	+		LRK54_RS18050	0.17	+0.3
3,940,419	+		LRK54_RS18050	0.17	-1.6
3,940,420	-		LRK54_RS18050	0.17	-2.4
3,940,420	-		LRK54_RS18050	0.17	-0.8
3,940,420	-		LRK54_RS18050	0.17	-0.6
3,940,420	-		LRK54_RS18050	0.17	+0.1
3,940,578	+		LRK54_RS18050	0.30	+0.6
3,940,578	+		LRK54_RS18050	0.30	-0.8
3,940,578	+		LRK54_RS18050	0.30	-1.1
3,940,578	+		LRK54_RS18050	0.30	-1.9
3,940,578	+		LRK54_RS18050	0.30	-2.3
3,940,578	+		LRK54_RS18050	0.30	-1.4
3,940,578	+		LRK54_RS18050	0.30	-0.8
3,940,578	+		LRK54_RS18050	0.30	+0.6
3,940,578	+		LRK54_RS18050	0.30	+1.6
3,940,578	+		LRK54_RS18050	0.30	+1.0
3,940,578	+		LRK54_RS18050	0.30	-0.4
3,940,578	+		LRK54_RS18050	0.30	-1.1
3,940,578	+		LRK54_RS18050	0.30	-0.4
3,940,578	+		LRK54_RS18050	0.30	+1.6
3,940,578	+		LRK54_RS18050	0.30	-0.9
3,940,578	+		LRK54_RS18050	0.30	-0.3
3,940,578	+		LRK54_RS18050	0.30	-0.4
3,940,578	+		LRK54_RS18050	0.30	-0.1
3,940,578	+		LRK54_RS18050	0.30	-2.5
3,940,578	+		LRK54_RS18050	0.30	-1.4
3,940,578	+		LRK54_RS18050	0.30	-0.4
3,940,578	+		LRK54_RS18050	0.30	-0.8
3,940,578	+		LRK54_RS18050	0.30	+1.6
3,940,578	+		LRK54_RS18050	0.30	-0.9
3,940,578	+		LRK54_RS18050	0.30	-1.8
3,940,578	+		LRK54_RS18050	0.30	-1.3
3,940,578	+		LRK54_RS18050	0.30	-2.0
3,940,578	+		LRK54_RS18050	0.30	-2.1
3,940,578	+		LRK54_RS18050	0.30	-0.3
3,940,578	+		LRK54_RS18050	0.30	+2.6
3,940,578	+		LRK54_RS18050	0.30	-0.3
3,940,578	+		LRK54_RS18050	0.30	+2.6
3,940,578	+		LRK54_RS18050	0.30	+0.6
3,940,578	+		LRK54_RS18050	0.30	+1.0
3,940,578	+		LRK54_RS18050	0.30	-0.3
3,940,579	-		LRK54_RS18050	0.30	-0.9
3,940,579	-		LRK54_RS18050	0.30	-0.4
3,940,579	-		LRK54_RS18050	0.30	-1.4
3,940,579	-		LRK54_RS18050	0.30	-1.0
3,940,579	-		LRK54_RS18050	0.30	-0.0
3,940,579	-		LRK54_RS18050	0.30	+2.6
3,940,579	-		LRK54_RS18050	0.30	-0.0
3,940,579	-		LRK54_RS18050	0.30	-0.3
3,940,579	-		LRK54_RS18050	0.30	-0.3
3,940,579	-		LRK54_RS18050	0.30	-1.3
3,940,579	-		LRK54_RS18050	0.30	+1.0
3,940,579	-		LRK54_RS18050	0.30	-0.0
3,940,579	-		LRK54_RS18050	0.30	-2.0
3,940,579	-		LRK54_RS18050	0.30	-2.0
3,940,579	-		LRK54_RS18050	0.30	-0.9
3,940,579	-		LRK54_RS18050	0.30	+1.0
3,940,579	-		LRK54_RS18050	0.30	-0.8
3,940,579	-		LRK54_RS18050	0.30	-0.9
3,940,579	-		LRK54_RS18050	0.30	-0.0
3,940,579	-		LRK54_RS18050	0.30	-1.1
3,940,579	-		LRK54_RS18050	0.30	+0.6
3,940,579	-		LRK54_RS18050	0.30	-0.4
3,940,579	-		LRK54_RS18050	0.30	-0.4
3,940,579	-		LRK54_RS18050	0.30	-0.4
3,940,680	+		LRK54_RS18050	0.39	-1.3
3,940,680	+		LRK54_RS18050	0.39	+1.0
3,940,680	+		LRK54_RS18050	0.39	-1.1
3,940,680	+		LRK54_RS18050	0.39	+0.6
3,940,680	+		LRK54_RS18050	0.39	-0.9
3,940,680	+		LRK54_RS18050	0.39	-0.8
3,940,680	+		LRK54_RS18050	0.39	-0.4
3,940,680	+		LRK54_RS18050	0.39	-1.5
3,940,680	+		LRK54_RS18050	0.39	+0.6
3,940,680	+		LRK54_RS18050	0.39	+2.6
3,940,680	+		LRK54_RS18050	0.39	-2.1
3,940,680	+		LRK54_RS18050	0.39	-0.4
3,940,681	-		LRK54_RS18050	0.39	+0.2
3,940,681	-		LRK54_RS18050	0.39	-0.0
3,940,681	-		LRK54_RS18050	0.39	+0.6
3,940,681	-		LRK54_RS18050	0.39	-0.8
3,940,681	-		LRK54_RS18050	0.39	-2.2
3,940,681	-		LRK54_RS18050	0.39	-1.0
3,940,776	+		LRK54_RS18050	0.47	-1.3
3,940,776	+		LRK54_RS18050	0.47	-2.7
3,940,776	+		LRK54_RS18050	0.47	-1.1
3,940,776	+		LRK54_RS18050	0.47	-1.4
3,940,777	-		LRK54_RS18050	0.47	-3.2
3,940,777	-		LRK54_RS18050	0.47	+0.6
3,940,777	-		LRK54_RS18050	0.47	-1.0
3,940,777	-		LRK54_RS18050	0.47	-0.3
3,940,777	-		LRK54_RS18050	0.47	+1.0
3,940,833	+		LRK54_RS18050	0.52	+1.0
3,940,833	+		LRK54_RS18050	0.52	+0.4
3,940,833	+		LRK54_RS18050	0.52	-2.1
3,940,833	+		LRK54_RS18050	0.52	-0.8
3,940,833	+		LRK54_RS18050	0.52	-2.9
3,940,833	+		LRK54_RS18050	0.52	-0.4
3,940,833	+		LRK54_RS18050	0.52	-0.4
3,940,833	+		LRK54_RS18050	0.52	-0.4
3,940,834	-		LRK54_RS18050	0.52	-0.0
3,940,834	-		LRK54_RS18050	0.52	-2.6
3,940,834	-		LRK54_RS18050	0.52	+0.1
3,940,834	-		LRK54_RS18050	0.52	+0.6
3,940,834	-		LRK54_RS18050	0.52	+0.6
3,940,834	-		LRK54_RS18050	0.52	-1.7
3,940,938	+		LRK54_RS18050	0.61	-0.0
3,940,938	+		LRK54_RS18050	0.61	-1.4
3,940,938	+		LRK54_RS18050	0.61	-0.0
3,940,938	+		LRK54_RS18050	0.61	-2.4
3,940,938	+		LRK54_RS18050	0.61	+0.6
3,940,938	+		LRK54_RS18050	0.61	+0.2
3,940,938	+		LRK54_RS18050	0.61	+1.0
3,940,938	+		LRK54_RS18050	0.61	-1.4
3,940,939	-		LRK54_RS18050	0.61	+0.6
3,940,939	-		LRK54_RS18050	0.61	-0.0
3,940,939	-		LRK54_RS18050	0.61	-1.0
3,940,939	-		LRK54_RS18050	0.61	-0.0
3,940,939	-		LRK54_RS18050	0.61	-1.9
3,940,939	-		LRK54_RS18050	0.61	-2.1
3,940,939	-		LRK54_RS18050	0.61	+0.5
3,940,939	-		LRK54_RS18050	0.61	+0.3
3,941,004	+		LRK54_RS18050	0.66	-0.0
3,941,004	+		LRK54_RS18050	0.66	-0.0
3,941,004	+		LRK54_RS18050	0.66	-2.1
3,941,004	+		LRK54_RS18050	0.66	-2.6
3,941,004	+		LRK54_RS18050	0.66	-2.0
3,941,004	+		LRK54_RS18050	0.66	+0.4
3,941,004	+		LRK54_RS18050	0.66	-1.9
3,941,004	+		LRK54_RS18050	0.66	-2.4
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-0.4
3,941,004	+		LRK54_RS18050	0.66	+0.2
3,941,004	+		LRK54_RS18050	0.66	-0.4
3,941,004	+		LRK54_RS18050	0.66	-0.8
3,941,004	+		LRK54_RS18050	0.66	-1.0
3,941,004	+		LRK54_RS18050	0.66	-0.0
3,941,004	+		LRK54_RS18050	0.66	-0.0
3,941,004	+		LRK54_RS18050	0.66	+0.6
3,941,004	+		LRK54_RS18050	0.66	+1.6
3,941,004	+		LRK54_RS18050	0.66	-0.6
3,941,004	+		LRK54_RS18050	0.66	-2.2
3,941,004	+		LRK54_RS18050	0.66	-0.6
3,941,004	+		LRK54_RS18050	0.66	-0.6
3,941,004	+		LRK54_RS18050	0.66	+1.6
3,941,004	+		LRK54_RS18050	0.66	-0.3
3,941,004	+		LRK54_RS18050	0.66	-3.1
3,941,004	+		LRK54_RS18050	0.66	+0.6
3,941,004	+		LRK54_RS18050	0.66	-0.6
3,941,004	+		LRK54_RS18050	0.66	-0.8
3,941,004	+		LRK54_RS18050	0.66	-0.4
3,941,004	+		LRK54_RS18050	0.66	-3.7
3,941,004	+		LRK54_RS18050	0.66	+1.6
3,941,004	+		LRK54_RS18050	0.66	-1.7
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-0.9
3,941,004	+		LRK54_RS18050	0.66	-1.4
3,941,004	+		LRK54_RS18050	0.66	-1.1
3,941,004	+		LRK54_RS18050	0.66	-0.8
3,941,004	+		LRK54_RS18050	0.66	+3.1
3,941,004	+		LRK54_RS18050	0.66	-0.0
3,941,004	+		LRK54_RS18050	0.66	-0.0
3,941,004	+		LRK54_RS18050	0.66	-0.0
3,941,004	+		LRK54_RS18050	0.66	-2.8
3,941,004	+		LRK54_RS18050	0.66	+2.1
3,941,004	+		LRK54_RS18050	0.66	-0.6
3,941,005	-		LRK54_RS18050	0.67	+1.6
3,941,005	-		LRK54_RS18050	0.67	+0.9
3,941,005	-		LRK54_RS18050	0.67	-0.6
3,941,005	-		LRK54_RS18050	0.67	-0.4
3,941,005	-		LRK54_RS18050	0.67	+0.2
3,941,005	-		LRK54_RS18050	0.67	-1.8
3,941,005	-		LRK54_RS18050	0.67	-0.3
3,941,005	-		LRK54_RS18050	0.67	+2.0
3,941,005	-		LRK54_RS18050	0.67	+0.6
3,941,005	-		LRK54_RS18050	0.67	-2.4
3,941,005	-		LRK54_RS18050	0.67	-0.4
3,941,005	-		LRK54_RS18050	0.67	-0.0
3,941,005	-		LRK54_RS18050	0.67	+1.6
3,941,005	-		LRK54_RS18050	0.67	-0.4
3,941,005	-		LRK54_RS18050	0.67	-0.0
3,941,005	-		LRK54_RS18050	0.67	+0.4
3,941,005	-		LRK54_RS18050	0.67	-0.0
3,941,005	-		LRK54_RS18050	0.67	-1.4
3,941,005	-		LRK54_RS18050	0.67	-1.1
3,941,005	-		LRK54_RS18050	0.67	+0.2
3,941,005	-		LRK54_RS18050	0.67	-0.8
3,941,005	-		LRK54_RS18050	0.67	+1.0
3,941,005	-		LRK54_RS18050	0.67	-1.7
3,941,005	-		LRK54_RS18050	0.67	-0.4
3,941,005	-		LRK54_RS18050	0.67	-0.8
3,941,005	-		LRK54_RS18050	0.67	-0.0
3,941,005	-		LRK54_RS18050	0.67	-1.0
3,941,005	-		LRK54_RS18050	0.67	+0.1
3,941,005	-		LRK54_RS18050	0.67	+0.6
3,941,005	-		LRK54_RS18050	0.67	-2.0
3,941,005	-		LRK54_RS18050	0.67	-1.7
3,941,103	+		LRK54_RS18050	0.75	-0.9
3,941,103	+		LRK54_RS18050	0.75	-0.9
3,941,104	-		LRK54_RS18050	0.75	-0.3
3,941,289	+				-1.1
3,941,289	+				-1.0
3,941,289	+				-1.3
3,941,289	+				-0.0
3,941,289	+				+0.2
3,941,289	+				-0.5
3,941,289	+				-1.4
3,941,289	+				+0.6
3,941,289	+				-1.3
3,941,289	+				-0.9
3,941,289	+				-1.4
3,941,289	+				-1.0
3,941,289	+				-2.0
3,941,289	+				+0.6
3,941,289	+				-1.0
3,941,289	+				-1.0
3,941,289	+				-0.3
3,941,289	+				-0.3
3,941,289	+				-0.6
3,941,290	-				+0.2
3,941,290	-				+0.6
3,941,290	-				-1.3
3,941,290	-				-1.9
3,941,290	-				+1.0
3,941,290	-				-0.0
3,941,290	-				-1.0
3,941,290	-				+0.2
3,941,407	+				-1.4
3,941,407	+				+1.6
3,941,407	+				-1.6
3,941,407	+				-0.0
3,941,407	+				+0.8
3,941,407	+				-0.3
3,941,407	+				+0.2
3,941,407	+				-0.0
3,941,407	+				+2.2
3,941,407	+				-0.4
3,941,408	-				-1.0
3,941,408	-				-0.8
3,941,408	-				-0.0
3,941,408	-				-0.6
3,941,408	-				+0.7
3,941,408	-				+0.6
3,941,408	-				+0.4
3,942,175	+		LRK54_RS18055	0.75	+1.0
3,942,175	+		LRK54_RS18055	0.75	-0.4
3,942,175	+		LRK54_RS18055	0.75	-0.3
3,942,175	+		LRK54_RS18055	0.75	-0.9
3,942,176	-		LRK54_RS18055	0.75	+0.2
3,942,176	-		LRK54_RS18055	0.75	+1.0
3,942,176	-		LRK54_RS18055	0.75	+0.6
3,942,176	-		LRK54_RS18055	0.75	+1.0
3,942,176	-		LRK54_RS18055	0.75	+0.2
3,942,200	-		LRK54_RS18055	0.78	-1.1
3,942,200	-		LRK54_RS18055	0.78	-1.0
3,942,200	-		LRK54_RS18055	0.78	+0.6
3,942,200	-		LRK54_RS18055	0.78	-0.3
3,942,250	+		LRK54_RS18055	0.83	+1.2
3,942,250	+		LRK54_RS18055	0.83	+1.0
3,942,250	+		LRK54_RS18055	0.83	-0.3
3,942,250	+		LRK54_RS18055	0.83	+1.2
3,942,250	+		LRK54_RS18055	0.83	-0.4
3,942,250	+		LRK54_RS18055	0.83	-1.1
3,942,250	+		LRK54_RS18055	0.83	+0.2
3,942,250	+		LRK54_RS18055	0.83	+0.5
3,942,250	+		LRK54_RS18055	0.83	+0.1
3,942,250	+		LRK54_RS18055	0.83	-0.4
3,942,250	+		LRK54_RS18055	0.83	-0.5
3,942,250	+		LRK54_RS18055	0.83	-0.1
3,942,250	+		LRK54_RS18055	0.83	+0.2
3,942,250	+		LRK54_RS18055	0.83	-1.3
3,942,250	+		LRK54_RS18055	0.83	-0.4
3,942,250	+		LRK54_RS18055	0.83	+2.0
3,942,250	+		LRK54_RS18055	0.83	-0.0
3,942,250	+		LRK54_RS18055	0.83	+0.2
3,942,250	+		LRK54_RS18055	0.83	+1.0
3,942,251	-		LRK54_RS18055	0.83	-1.6
3,942,251	-		LRK54_RS18055	0.83	+2.6
3,942,251	-				+1.6
3,942,251	-		LRK54_RS18055	0.83	-1.3
3,942,251	-		LRK54_RS18055	0.83	+0.6
3,942,251	-		LRK54_RS18055	0.83	+1.0
3,942,251	-		LRK54_RS18055	0.83	-0.4
3,942,251	-		LRK54_RS18055	0.83	+1.6
3,942,251	-		LRK54_RS18055	0.83	-0.0
3,942,251	-		LRK54_RS18055	0.83	+0.2
3,942,251	-		LRK54_RS18055	0.83	-0.6
3,942,251	-		LRK54_RS18055	0.83	-0.3
3,942,251	-		LRK54_RS18055	0.83	+0.6
3,942,251	-		LRK54_RS18055	0.83	+0.6
3,942,251	-		LRK54_RS18055	0.83	-0.6
3,942,252	+		LRK54_RS18055	0.83	-0.3
3,942,252	+		LRK54_RS18055	0.83	+1.0
3,942,253	-		LRK54_RS18055	0.83	+0.7
3,942,253	-		LRK54_RS18055	0.83	-0.4
3,942,253	-		LRK54_RS18055	0.83	-0.9
3,942,253	-		LRK54_RS18055	0.83	+2.6
3,942,327	+				-0.1
3,942,327	+				-0.0
3,942,327	+				-1.6
3,942,328	-				+0.6
3,942,328	-				-0.0
3,942,332	+				+0.2
3,942,333	-				-0.0
3,942,333	-				-0.0
3,942,340	+				+1.0
3,942,340	+				+0.2
3,942,340	+				-0.4
3,942,340	+				+1.6
3,942,341	-				-1.4
3,942,341	-				-0.3
3,942,341	-				+1.0
3,942,341	-				-1.4
3,942,424	+				-1.1
3,942,424	+				-0.8
3,942,424	+				-1.1
3,942,425	-				+0.1
3,942,425	-				-0.0
3,942,518	+				-0.9
3,942,518	+				+0.6
3,942,518	+				-1.1
3,942,519	-				+0.2
3,942,519	-				+0.2
3,942,519	-				-0.0
3,942,519	-				-0.0
3,942,556	-				-1.0
3,942,614	+		LRK54_RS18060	0.11	+0.6
3,942,614	+		LRK54_RS18060	0.11	-0.4
3,942,614	+		LRK54_RS18060	0.11	-1.1
3,942,614	+		LRK54_RS18060	0.11	+0.2
3,942,614	+		LRK54_RS18060	0.11	-0.0
3,942,614	+		LRK54_RS18060	0.11	-0.9
3,942,614	+		LRK54_RS18060	0.11	+2.2
3,942,614	+		LRK54_RS18060	0.11	-0.6
3,942,614	+		LRK54_RS18060	0.11	-0.0
3,942,614	+		LRK54_RS18060	0.11	-0.5
3,942,615	-		LRK54_RS18060	0.11	-0.0
3,942,615	-		LRK54_RS18060	0.11	+0.2
3,942,713	+		LRK54_RS18060	0.16	-0.6
3,942,713	+		LRK54_RS18060	0.16	-0.0
3,942,713	+		LRK54_RS18060	0.16	-0.3
3,942,713	+		LRK54_RS18060	0.16	-0.3
3,942,714	-		LRK54_RS18060	0.16	-0.3
3,942,732	+		LRK54_RS18060	0.17	-0.3
3,942,800	+		LRK54_RS18060	0.20	-0.9
3,942,923	+		LRK54_RS18060	0.27	-0.0
3,943,020	+		LRK54_RS18060	0.32	-1.3
3,943,020	+		LRK54_RS18060	0.32	-0.3
3,943,020	+		LRK54_RS18060	0.32	+1.2
3,943,020	+		LRK54_RS18060	0.32	-1.4
3,943,370	+		LRK54_RS18060	0.50	-1.4
3,943,370	+		LRK54_RS18060	0.50	+1.0
3,943,370	+		LRK54_RS18060	0.50	+0.4
3,943,370	+		LRK54_RS18060	0.50	+1.8
3,943,371	-		LRK54_RS18060	0.50	+1.6
3,943,371	-		LRK54_RS18060	0.50	+1.3
3,943,371	-		LRK54_RS18060	0.50	-0.8