Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17900

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
3,911,130	+				+0.6
3,911,130	+				-1.3
3,911,130	+				+0.6
3,911,130	+				+0.9
3,911,130	+				-1.7
3,911,130	+				-0.7
3,911,130	+				+2.6
3,911,130	+				-2.1
3,911,130	+				-1.4
3,911,130	+				-2.3
3,911,130	+				-0.4
3,911,130	+				+0.2
3,911,130	+				-0.2
3,911,130	+				+0.1
3,911,130	+				-0.4
3,911,130	+				-0.7
3,911,130	+				+1.6
3,911,130	+				+0.5
3,911,130	+				-0.9
3,911,131	-				+1.4
3,911,131	-				+1.0
3,911,131	-				-0.0
3,911,131	-				-0.5
3,911,131	-				-0.6
3,911,131	-				-1.4
3,911,131	-				-0.9
3,911,131	-				-0.8
3,911,131	-				+0.9
3,911,131	-				-2.1
3,911,131	-				-0.5
3,911,131	-				-2.3
3,911,131	-				-1.4
3,911,131	-				-2.9
3,911,131	-				-0.1
3,911,131	-				-0.4
3,911,131	-				-0.9
3,911,131	-				+0.2
3,911,131	-				-0.8
3,911,131	-				-0.8
3,911,131	-				-1.0
3,911,131	-				-0.0
3,911,223	-		LRK54_RS17895	0.13	+0.6
3,911,300	-		LRK54_RS17895	0.21	-0.7
3,911,300	-		LRK54_RS17895	0.21	-1.1
3,911,300	-		LRK54_RS17895	0.21	+0.2
3,911,627	+		LRK54_RS17895	0.53	-0.6
3,911,627	+		LRK54_RS17895	0.53	-2.4
3,911,627	+		LRK54_RS17895	0.53	-0.9
3,911,627	+		LRK54_RS17895	0.53	-1.0
3,911,627	+		LRK54_RS17895	0.53	+0.9
3,911,627	+		LRK54_RS17895	0.53	-0.0
3,911,627	+		LRK54_RS17895	0.53	+1.1
3,911,627	+		LRK54_RS17895	0.53	-0.4
3,911,627	+		LRK54_RS17895	0.53	-3.2
3,911,627	+		LRK54_RS17895	0.53	-2.0
3,911,627	+		LRK54_RS17895	0.53	+0.2
3,911,627	+		LRK54_RS17895	0.53	-0.4
3,911,627	+		LRK54_RS17895	0.53	-0.0
3,911,627	+		LRK54_RS17895	0.53	-0.9
3,911,627	+		LRK54_RS17895	0.53	+1.0
3,911,627	+		LRK54_RS17895	0.53	-1.1
3,911,628	-		LRK54_RS17895	0.54	-0.3
3,911,628	-		LRK54_RS17895	0.54	-0.3
3,911,628	-		LRK54_RS17895	0.54	+0.3
3,911,628	-		LRK54_RS17895	0.54	+1.3
3,911,628	-		LRK54_RS17895	0.54	-0.8
3,911,628	-		LRK54_RS17895	0.54	+1.8
3,911,628	-		LRK54_RS17895	0.54	-2.0
3,911,628	-		LRK54_RS17895	0.54	+1.7
3,911,628	-		LRK54_RS17895	0.54	-0.5
3,911,628	-		LRK54_RS17895	0.54	-0.0
3,911,628	-		LRK54_RS17895	0.54	-1.0
3,911,628	-		LRK54_RS17895	0.54	-0.8
3,911,628	-		LRK54_RS17895	0.54	-0.4
3,911,628	-		LRK54_RS17895	0.54	-1.0
3,911,628	-		LRK54_RS17895	0.54	-0.6
3,911,628	-		LRK54_RS17895	0.54	+0.1
3,911,628	-		LRK54_RS17895	0.54	-0.0
3,911,628	-		LRK54_RS17895	0.54	-2.2
3,911,628	-		LRK54_RS17895	0.54	-0.3
3,911,628	-		LRK54_RS17895	0.54	-1.8
3,911,628	-		LRK54_RS17895	0.54	-2.3
3,911,628	-		LRK54_RS17895	0.54	-1.7
3,911,628	-		LRK54_RS17895	0.54	+0.6
3,911,777	+		LRK54_RS17895	0.68	-0.3
3,911,777	+		LRK54_RS17895	0.68	-2.0
3,911,777	+		LRK54_RS17895	0.68	-1.0
3,911,777	+		LRK54_RS17895	0.68	+0.7
3,911,777	+		LRK54_RS17895	0.68	+0.2
3,911,777	+		LRK54_RS17895	0.68	-0.5
3,911,777	+		LRK54_RS17895	0.68	-0.9
3,911,777	+		LRK54_RS17895	0.68	+1.6
3,911,778	-		LRK54_RS17895	0.69	-0.5
3,911,778	-		LRK54_RS17895	0.69	+1.9
3,911,778	-		LRK54_RS17895	0.69	+1.7
3,911,778	-		LRK54_RS17895	0.69	-0.4
3,911,778	-		LRK54_RS17895	0.69	-1.1
3,911,778	-		LRK54_RS17895	0.69	-2.4
3,911,882	+		LRK54_RS17895	0.79	-1.3
3,911,882	+		LRK54_RS17895	0.79	-0.8
3,911,883	-		LRK54_RS17895	0.79	-1.4
3,911,883	-		LRK54_RS17895	0.79	+0.1
3,911,883	-		LRK54_RS17895	0.79	+1.0
3,911,883	-		LRK54_RS17895	0.79	-1.8
3,911,883	-		LRK54_RS17895	0.79	+0.2
3,911,883	-		LRK54_RS17895	0.79	-0.9
3,911,981	+		LRK54_RS17895	0.89	-0.7
3,911,981	+		LRK54_RS17895	0.89	-1.1
3,911,981	+		LRK54_RS17895	0.89	-1.3
3,911,981	+		LRK54_RS17895	0.89	+1.8
3,911,981	+		LRK54_RS17895	0.89	-0.9
3,911,981	+		LRK54_RS17895	0.89	-1.8
3,911,981	+		LRK54_RS17895	0.89	-2.0
3,911,981	+		LRK54_RS17895	0.89	+1.1
3,911,981	+		LRK54_RS17895	0.89	+0.7
3,911,981	+		LRK54_RS17895	0.89	-1.0
3,911,982	-		LRK54_RS17895	0.89	-0.3
3,911,982	-		LRK54_RS17895	0.89	+2.2
3,911,982	-		LRK54_RS17895	0.89	-1.0
3,911,982	-		LRK54_RS17895	0.89	-0.3
3,911,982	-		LRK54_RS17895	0.89	+0.2
3,911,982	-		LRK54_RS17895	0.89	-0.9
3,911,982	-		LRK54_RS17895	0.89	-2.0
3,912,193	-		LRK54_RS17900	0.30	+0.2
3,912,280	+		LRK54_RS17900	0.55	-2.3
3,912,280	+		LRK54_RS17900	0.55	-2.4
3,912,280	+		LRK54_RS17900	0.55	-0.8
3,912,281	-		LRK54_RS17900	0.55	-0.1
3,912,281	-		LRK54_RS17900	0.55	-0.4
3,912,281	-		LRK54_RS17900	0.55	-0.6
3,912,281	-		LRK54_RS17900	0.55	-0.9
3,912,527	+				-1.1
3,912,528	-				+0.7
3,912,528	-				+1.2
3,912,783	+		LRK54_RS17905	0.32	-1.5
3,912,928	+		LRK54_RS17905	0.56	+1.0
3,912,928	+		LRK54_RS17905	0.56	-1.0
3,912,928	+		LRK54_RS17905	0.56	+0.2
3,912,928	+		LRK54_RS17905	0.56	+2.6
3,912,929	-		LRK54_RS17905	0.56	-0.4
3,912,929	-		LRK54_RS17905	0.56	+1.1
3,912,929	-		LRK54_RS17905	0.56	-0.4
3,912,929	-		LRK54_RS17905	0.56	-1.3
3,912,929	-		LRK54_RS17905	0.56	-0.9
3,912,929	-		LRK54_RS17905	0.56	-0.6
3,912,929	-		LRK54_RS17905	0.56	+1.0
3,912,929	-		LRK54_RS17905	0.56	+0.7
3,913,159	+				+0.5
3,913,159	+				-1.1
3,913,159	+				-1.0
3,913,159	+				+0.2
3,913,159	+				+1.0
3,913,159	+				-0.6
3,913,160	-				-0.4
3,913,160	-				+2.0
3,913,160	-				+1.0
3,913,160	-				-0.6
3,913,160	-				+0.9
3,913,160	-				+0.2
3,913,160	-				-1.1
3,913,160	-				-0.9
3,913,160	-				+0.4
3,913,160	-				-0.1
3,913,160	-				-0.9
3,913,162	+				-1.1
3,913,162	+				-1.4
3,913,162	+				-0.5
3,913,162	+				-1.0
3,913,162	+				+0.5
3,913,162	+				+1.4
3,913,162	+				-0.7
3,913,162	+				+1.1
3,913,162	+				-0.8
3,913,162	+				-0.2
3,913,162	+				+0.5
3,913,162	+				-0.8
3,913,162	+				+0.4
3,913,162	+				-0.3
3,913,162	+				-0.7
3,913,162	+				-1.4
3,913,163	-				-0.6
3,913,163	-				+0.4
3,913,163	-				+0.4
3,913,163	-				-0.5
3,913,163	-				+0.1
3,913,163	-				-0.1
3,913,163	-				-0.3
3,913,163	-				-0.1
3,913,255	+				-0.6
3,913,255	+				-0.6
3,913,255	+				-0.4
3,913,256	-				-0.3
3,913,256	-				-0.4
3,913,256	-				+0.8
3,913,256	-				-0.1
3,913,256	-				-0.8
3,913,256	-				-0.3
3,913,256	-				+0.5
3,913,274	+				-1.4
3,913,274	+				+0.6
3,913,274	+				+0.8
3,913,274	+				+1.0
3,913,274	+				-1.0
3,913,274	+				-2.0
3,913,274	+				+0.2
3,913,274	+				-0.4
3,913,274	+				-0.8
3,913,274	+				+0.2
3,913,274	+				+0.6
3,913,274	+				+0.7
3,913,274	+				-0.4
3,913,275	-				+0.0
3,913,275	-				-0.4
3,913,275	-				+0.5
3,913,275	-				-0.4
3,913,275	-				-1.6
3,913,275	-				-0.4
3,913,275	-				+0.5
3,913,275	-				+1.5
3,913,275	-				+0.7
3,913,275	-				+0.4
3,913,275	-				+1.7
3,913,275	-				-1.4
3,913,275	-				-0.6
3,913,275	-				+0.2
3,913,275	-				-0.1
3,913,275	-				-1.2
3,913,275	-				+1.0
3,913,334	+		LRK54_RS17910	0.17	+0.5
3,913,334	+		LRK54_RS17910	0.17	-1.5
3,913,334	+		LRK54_RS17910	0.17	-0.3
3,913,334	+		LRK54_RS17910	0.17	+0.4
3,913,334	+		LRK54_RS17910	0.17	+0.9
3,913,334	+		LRK54_RS17910	0.17	-0.6
3,913,334	+		LRK54_RS17910	0.17	-0.3
3,913,334	+		LRK54_RS17910	0.17	-2.0
3,913,334	+		LRK54_RS17910	0.17	+2.0
3,913,334	+		LRK54_RS17910	0.17	+0.4
3,913,335	-		LRK54_RS17910	0.18	+0.1
3,913,335	-		LRK54_RS17910	0.18	+0.2
3,913,335	-		LRK54_RS17910	0.18	+0.3
3,913,335	-		LRK54_RS17910	0.18	+3.2
3,913,335	-		LRK54_RS17910	0.18	+1.2
3,913,335	-		LRK54_RS17910	0.18	+1.7
3,913,335	-		LRK54_RS17910	0.18	-2.4
3,913,335	-		LRK54_RS17910	0.18	+0.4
3,913,335	-		LRK54_RS17910	0.18	-0.2
3,913,418	+		LRK54_RS17910	0.41	-0.8
3,913,418	+		LRK54_RS17910	0.41	-0.4
3,913,418	+		LRK54_RS17910	0.41	+0.5
3,913,418	+		LRK54_RS17910	0.41	-2.6
3,913,418	+		LRK54_RS17910	0.41	-0.3
3,913,418	+		LRK54_RS17910	0.41	-1.3
3,913,418	+		LRK54_RS17910	0.41	-0.7
3,913,418	+		LRK54_RS17910	0.41	+0.8
3,913,418	+		LRK54_RS17910	0.41	+1.0
3,913,418	+		LRK54_RS17910	0.41	+0.3
3,913,418	+		LRK54_RS17910	0.41	+0.2
3,913,418	+		LRK54_RS17910	0.41	-1.8
3,913,418	+		LRK54_RS17910	0.41	+0.0
3,913,418	+		LRK54_RS17910	0.41	+0.7
3,913,418	+		LRK54_RS17910	0.41	-1.4
3,913,418	+		LRK54_RS17910	0.41	+1.0
3,913,418	+		LRK54_RS17910	0.41	+0.3
3,913,418	+		LRK54_RS17910	0.41	-0.6
3,913,418	+		LRK54_RS17910	0.41	-0.6
3,913,418	+		LRK54_RS17910	0.41	-0.4
3,913,418	+		LRK54_RS17910	0.41	+1.6
3,913,418	+		LRK54_RS17910	0.41	-0.0
3,913,418	+		LRK54_RS17910	0.41	-0.9
3,913,418	+		LRK54_RS17910	0.41	+0.2
3,913,418	+		LRK54_RS17910	0.41	+0.7
3,913,418	+		LRK54_RS17910	0.41	-0.4
3,913,418	+		LRK54_RS17910	0.41	-1.4
3,913,418	+		LRK54_RS17910	0.41	-0.2
3,913,418	+		LRK54_RS17910	0.41	+2.3
3,913,418	+		LRK54_RS17910	0.41	-0.9
3,913,418	+		LRK54_RS17910	0.41	+1.0
3,913,418	+		LRK54_RS17910	0.41	+0.1
3,913,418	+		LRK54_RS17910	0.41	+1.0
3,913,418	+		LRK54_RS17910	0.41	+0.7
3,913,418	+		LRK54_RS17910	0.41	-0.2
3,913,418	+		LRK54_RS17910	0.41	-0.1
3,913,418	+		LRK54_RS17910	0.41	+0.6
3,913,418	+		LRK54_RS17910	0.41	+1.1
3,913,418	+		LRK54_RS17910	0.41	+0.4
3,913,418	+		LRK54_RS17910	0.41	-0.7
3,913,418	+		LRK54_RS17910	0.41	+0.2
3,913,418	+		LRK54_RS17910	0.41	+0.5
3,913,418	+		LRK54_RS17910	0.41	+1.6
3,913,418	+		LRK54_RS17910	0.41	-1.3
3,913,418	+		LRK54_RS17910	0.41	-1.3
3,913,418	+		LRK54_RS17910	0.41	-1.5
3,913,418	+		LRK54_RS17910	0.41	-0.6
3,913,418	+		LRK54_RS17910	0.41	-1.3
3,913,418	+		LRK54_RS17910	0.41	+0.1
3,913,418	+		LRK54_RS17910	0.41	-0.4
3,913,419	-		LRK54_RS17910	0.41	+0.3
3,913,419	-		LRK54_RS17910	0.41	-0.2
3,913,419	-		LRK54_RS17910	0.41	+0.1
3,913,419	-		LRK54_RS17910	0.41	-0.3
3,913,419	-		LRK54_RS17910	0.41	-0.3
3,913,419	-		LRK54_RS17910	0.41	+0.8
3,913,419	-		LRK54_RS17910	0.41	-0.2
3,913,419	-		LRK54_RS17910	0.41	+1.0
3,913,419	-		LRK54_RS17910	0.41	+0.4
3,913,419	-		LRK54_RS17910	0.41	+0.1
3,913,419	-		LRK54_RS17910	0.41	+0.2
3,913,419	-		LRK54_RS17910	0.41	-0.9
3,913,419	-		LRK54_RS17910	0.41	+1.1
3,913,419	-		LRK54_RS17910	0.41	-0.3
3,913,419	-		LRK54_RS17910	0.41	-0.1
3,913,419	-		LRK54_RS17910	0.41	+0.8
3,913,419	-		LRK54_RS17910	0.41	+0.4
3,913,419	-		LRK54_RS17910	0.41	-0.5
3,913,419	-		LRK54_RS17910	0.41	+0.8
3,913,419	-		LRK54_RS17910	0.41	+3.0
3,913,419	-		LRK54_RS17910	0.41	-1.3
3,913,419	-		LRK54_RS17910	0.41	-0.4
3,913,419	-		LRK54_RS17910	0.41	-1.6
3,913,419	-		LRK54_RS17910	0.41	-0.3
3,913,419	-		LRK54_RS17910	0.41	-1.4
3,913,419	-		LRK54_RS17910	0.41	+0.9
3,913,419	-		LRK54_RS17910	0.41	-0.2
3,913,419	-		LRK54_RS17910	0.41	+0.1
3,913,419	-		LRK54_RS17910	0.41	-0.6
3,913,419	-		LRK54_RS17910	0.41	+0.4
3,913,419	-		LRK54_RS17910	0.41	-0.1
3,913,419	-		LRK54_RS17910	0.41	+0.4
3,913,419	-		LRK54_RS17910	0.41	+0.0
3,913,419	-		LRK54_RS17910	0.41	+2.1
3,913,419	-		LRK54_RS17910	0.41	-0.1
3,913,419	-		LRK54_RS17910	0.41	-0.1
3,913,419	-		LRK54_RS17910	0.41	-0.1
3,913,419	-		LRK54_RS17910	0.41	+0.4
3,913,419	-		LRK54_RS17910	0.41	-0.2
3,913,419	-		LRK54_RS17910	0.41	-1.0
3,913,419	-		LRK54_RS17910	0.41	+0.7
3,913,419	-		LRK54_RS17910	0.41	-0.1
3,913,419	-		LRK54_RS17910	0.41	-0.1
3,913,419	-		LRK54_RS17910	0.41	+0.7
3,913,419	-		LRK54_RS17910	0.41	+0.3
3,913,419	-		LRK54_RS17910	0.41	+0.1
3,913,419	-		LRK54_RS17910	0.41	-0.3
3,913,419	-		LRK54_RS17910	0.41	-0.0
3,913,419	-		LRK54_RS17910	0.41	+0.5
3,913,419	-		LRK54_RS17910	0.41	-0.1
3,913,419	-		LRK54_RS17910	0.41	-0.2
3,913,419	-		LRK54_RS17910	0.41	-1.4
3,913,419	-		LRK54_RS17910	0.41	-0.3
3,913,419	-		LRK54_RS17910	0.41	+0.6
3,913,419	-		LRK54_RS17910	0.41	+0.6
3,913,419	-		LRK54_RS17910	0.41	+0.2
3,913,419	-		LRK54_RS17910	0.41	+1.1
3,913,419	-		LRK54_RS17910	0.41	-1.3
3,913,419	-		LRK54_RS17910	0.41	+2.0
3,913,419	-		LRK54_RS17910	0.41	-0.6
3,913,419	-		LRK54_RS17910	0.41	+0.1
3,913,419	-		LRK54_RS17910	0.41	-0.0
3,913,419	-		LRK54_RS17910	0.41	-0.2