Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12190

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
2,711,148	+		LRK54_RS12185	0.54	-1.2
2,711,148	+		LRK54_RS12185	0.54	-0.5
2,711,149	-		LRK54_RS12185	0.54	-1.6
2,711,196	+		LRK54_RS12185	0.56	-1.3
2,711,196	+		LRK54_RS12185	0.56	-2.7
2,711,196	+		LRK54_RS12185	0.56	-0.5
2,711,196	+		LRK54_RS12185	0.56	+1.0
2,711,197	-		LRK54_RS12185	0.57	-1.2
2,711,197	-		LRK54_RS12185	0.57	-1.7
2,711,197	-		LRK54_RS12185	0.57	+0.3
2,711,197	-		LRK54_RS12185	0.57	-1.2
2,711,241	+		LRK54_RS12185	0.59	-0.5
2,711,241	+		LRK54_RS12185	0.59	+0.6
2,711,241	+		LRK54_RS12185	0.59	-1.0
2,711,241	+		LRK54_RS12185	0.59	-0.8
2,711,241	+		LRK54_RS12185	0.59	-1.6
2,711,241	+		LRK54_RS12185	0.59	+0.0
2,711,241	+		LRK54_RS12185	0.59	-1.7
2,711,241	+		LRK54_RS12185	0.59	-1.6
2,711,241	+		LRK54_RS12185	0.59	-0.3
2,711,242	-		LRK54_RS12185	0.59	-2.0
2,711,242	-		LRK54_RS12185	0.59	-1.5
2,711,242	-		LRK54_RS12185	0.59	-1.1
2,711,242	-		LRK54_RS12185	0.59	-1.4
2,711,242	-		LRK54_RS12185	0.59	-1.4
2,711,242	-		LRK54_RS12185	0.59	-0.2
2,711,242	-		LRK54_RS12185	0.59	-1.8
2,711,242	-		LRK54_RS12185	0.59	+0.8
2,711,289	+		LRK54_RS12185	0.61	-2.8
2,711,289	+		LRK54_RS12185	0.61	-0.0
2,711,290	-		LRK54_RS12185	0.61	+2.0
2,711,290	-		LRK54_RS12185	0.61	-0.6
2,711,290	-		LRK54_RS12185	0.61	-1.5
2,711,290	-		LRK54_RS12185	0.61	-1.1
2,711,290	-		LRK54_RS12185	0.61	-0.2
2,711,290	-		LRK54_RS12185	0.61	+0.3
2,711,290	-		LRK54_RS12185	0.61	-0.8
2,711,290	-		LRK54_RS12185	0.61	-0.7
2,711,515	-		LRK54_RS12185	0.73	-0.6
2,711,515	-		LRK54_RS12185	0.73	-2.6
2,711,823	-		LRK54_RS12185	0.89	-1.5
2,711,924	+				-0.7
2,711,925	-				+0.0
2,712,078	+				-0.8
2,712,078	+				-1.6
2,712,078	+				+0.5
2,712,099	+				-0.2
2,712,099	+				+1.1
2,712,100	-				+0.1
2,712,100	-				-0.3
2,712,132	+				-0.3
2,712,132	+				-0.2
2,712,132	+				+1.3
2,712,132	+				+1.0
2,712,132	+				+0.0
2,712,133	-				-0.1
2,712,133	-				+0.0
2,712,133	-				-0.6
2,712,133	-				+0.2
2,712,133	-				-1.1
2,712,133	-				+2.1
2,712,278	-		LRK54_RS12190	0.19	-0.5
2,712,605	+		LRK54_RS12190	0.59	-1.2
2,712,605	+		LRK54_RS12190	0.59	-1.6
2,712,605	+		LRK54_RS12190	0.59	+0.3
2,712,605	+		LRK54_RS12190	0.59	-2.3
2,712,605	+		LRK54_RS12190	0.59	-1.8
2,712,605	+		LRK54_RS12190	0.59	-1.5
2,712,605	+		LRK54_RS12190	0.59	-1.2
2,712,605	+		LRK54_RS12190	0.59	-1.9
2,712,605	+		LRK54_RS12190	0.59	-0.7
2,712,605	+		LRK54_RS12190	0.59	-1.4
2,712,605	+		LRK54_RS12190	0.59	+0.0
2,712,605	+		LRK54_RS12190	0.59	+0.3
2,712,605	+		LRK54_RS12190	0.59	-1.2
2,712,605	+		LRK54_RS12190	0.59	+0.9
2,712,605	+		LRK54_RS12190	0.59	-0.5
2,712,605	+		LRK54_RS12190	0.59	-2.2
2,712,605	+		LRK54_RS12190	0.59	-2.7
2,712,605	+		LRK54_RS12190	0.59	-1.2
2,712,605	+		LRK54_RS12190	0.59	-0.8
2,712,605	+		LRK54_RS12190	0.59	-0.5
2,712,605	+		LRK54_RS12190	0.59	+1.3
2,712,606	-		LRK54_RS12190	0.59	+1.3
2,712,606	-		LRK54_RS12190	0.59	-2.0
2,712,606	-		LRK54_RS12190	0.59	-3.4
2,712,606	-		LRK54_RS12190	0.59	-2.1
2,712,606	-		LRK54_RS12190	0.59	-3.5
2,712,606	-		LRK54_RS12190	0.59	-2.4
2,712,606	-		LRK54_RS12190	0.59	-2.2
2,712,606	-		LRK54_RS12190	0.59	+0.0
2,712,606	-		LRK54_RS12190	0.59	+0.5
2,712,606	-		LRK54_RS12190	0.59	+0.0
2,712,606	-		LRK54_RS12190	0.59	-1.8
2,712,606	-		LRK54_RS12190	0.59	-0.7
2,712,606	-		LRK54_RS12190	0.59	-1.7
2,712,606	-		LRK54_RS12190	0.59	-1.7
2,712,606	-		LRK54_RS12190	0.59	-3.1
2,712,930	+				-1.2
2,712,930	+				-0.3
2,712,930	+				+0.4
2,712,930	+				-1.1
2,712,930	+				-0.7
2,712,930	+				+0.1
2,712,930	+				+1.9
2,712,930	+				+0.0
2,712,930	+				+0.5
2,712,930	+				+0.8
2,712,930	+				-0.9
2,712,930	+				-2.2
2,712,930	+				+0.2
2,712,930	+				-0.3
2,712,930	+				-1.2
2,712,930	+				-0.7
2,712,930	+				+0.3
2,712,930	+				+1.3
2,712,930	+				+0.5
2,712,930	+				-0.5
2,712,930	+				+0.3
2,712,930	+				+1.1
2,712,930	+				-2.0
2,712,931	-				-1.1
2,712,931	-				-2.5
2,712,931	-				-1.2
2,712,931	-				-3.1
2,712,931	-				-1.0
2,712,931	-				-1.0
2,712,931	-				-1.7
2,712,931	-				+1.8
2,712,931	-				-1.3
2,712,931	-				-1.9
2,712,931	-				-0.7
2,712,931	-				-2.1
2,712,932	+				-2.5
2,712,932	+				+0.0
2,712,932	+				-0.2
2,712,932	+				-1.1
2,712,932	+				-1.8
2,712,932	+				-1.6
2,712,932	+				-3.6
2,712,932	+				-1.1
2,712,932	+				-1.5
2,712,932	+				-0.7
2,712,932	+				-1.7
2,712,932	+				-1.4
2,712,932	+				-1.8
2,712,932	+				-2.4
2,712,932	+				+2.6
2,712,933	-				-1.2
2,712,933	-				-0.2
2,712,933	-				-0.8
2,712,933	-				-1.0
2,712,933	-				-1.9
2,712,933	-				-2.4
2,712,933	-				+0.0
2,712,933	-				-2.4
2,712,933	-				-1.7
2,712,933	-				-0.5
2,712,933	-				-2.4
2,712,933	-				-2.9
2,712,933	-				-2.6
2,712,933	-				+0.8
2,712,933	-				+0.0
2,712,933	-				+1.3
2,712,933	-				-1.2
2,712,933	-				+0.3
2,712,933	-				-0.6
2,712,933	-				-0.8
2,712,933	-				-0.7
2,712,933	-				-2.4
2,712,933	-				-1.2
2,712,933	-				-1.1
2,712,933	-				+0.3
2,712,933	-				-1.5
2,712,933	-				-1.6
2,712,933	-				-1.4
2,712,933	-				-1.3
2,713,001	+				-0.6
2,713,001	+				-2.0
2,713,001	+				-0.8
2,713,001	+				-0.6
2,713,001	+				-1.4
2,713,001	+				-1.0
2,713,001	+				+0.3
2,713,001	+				+0.4
2,713,001	+				-2.1
2,713,001	+				-2.4
2,713,001	+				-0.6
2,713,001	+				+2.1
2,713,001	+				+1.1
2,713,001	+				+0.9
2,713,001	+				-1.0
2,713,001	+				-1.6
2,713,001	+				-0.4
2,713,001	+				-0.2
2,713,001	+				+1.1
2,713,001	+				-0.4
2,713,001	+				-1.3
2,713,001	+				-0.2
2,713,001	+				+0.4
2,713,001	+				-0.5
2,713,002	-				+0.3
2,713,002	-				-0.4
2,713,002	-				-0.4
2,713,002	-				+1.0
2,713,002	-				+0.2
2,713,002	-				+0.2
2,713,002	-				+1.5
2,713,002	-				-0.7
2,713,002	-				-1.1
2,713,002	-				-0.0
2,713,002	-				-1.5
2,713,002	-				-0.0
2,713,002	-				-0.4
2,713,002	-				-1.6
2,713,002	-				-2.4
2,713,569	+				-0.7
2,713,569	+				+0.0
2,713,569	+				+0.3
2,713,569	+				-1.7
2,713,569	+				-1.6
2,713,580	+				-0.2
2,713,580	+				-0.3
2,713,580	+				-2.5
2,713,600	+				-0.8
2,713,600	+				+0.0
2,713,600	+				+0.0
2,713,757	+		LRK54_RS12200	0.13	-0.1
2,713,757	+		LRK54_RS12200	0.13	-0.0
2,713,812	+		LRK54_RS12200	0.25	-1.5
2,713,812	+		LRK54_RS12200	0.25	+1.6
2,713,812	+		LRK54_RS12200	0.25	-0.9
2,713,812	+		LRK54_RS12200	0.25	-2.0
2,713,812	+		LRK54_RS12200	0.25	+1.3
2,713,812	+		LRK54_RS12200	0.25	-0.2
2,713,812	+		LRK54_RS12200	0.25	-1.0
2,713,812	+		LRK54_RS12200	0.25	-1.3
2,713,812	+		LRK54_RS12200	0.25	-0.9
2,713,812	+		LRK54_RS12200	0.25	+0.5
2,713,812	+		LRK54_RS12200	0.25	+1.0
2,713,812	+		LRK54_RS12200	0.25	-0.5
2,713,812	+		LRK54_RS12200	0.25	-1.0
2,713,812	+		LRK54_RS12200	0.25	+1.0
2,713,812	+		LRK54_RS12200	0.25	-0.9
2,713,812	+		LRK54_RS12200	0.25	+0.5
2,713,812	+		LRK54_RS12200	0.25	-1.2
2,713,812	+		LRK54_RS12200	0.25	-1.5
2,713,812	+		LRK54_RS12200	0.25	-1.6
2,713,812	+		LRK54_RS12200	0.25	-1.2
2,713,812	+		LRK54_RS12200	0.25	-2.4
2,713,812	+		LRK54_RS12200	0.25	+0.1
2,713,812	+		LRK54_RS12200	0.25	-1.8
2,713,812	+		LRK54_RS12200	0.25	-1.2
2,713,812	+		LRK54_RS12200	0.25	-0.8
2,713,812	+		LRK54_RS12200	0.25	+0.3
2,713,812	+		LRK54_RS12200	0.25	+0.2
2,713,812	+		LRK54_RS12200	0.25	-1.0
2,713,812	+		LRK54_RS12200	0.25	+0.8
2,713,812	+		LRK54_RS12200	0.25	-1.3
2,713,812	+		LRK54_RS12200	0.25	-2.5
2,713,851	+		LRK54_RS12200	0.34	-2.6
2,713,851	+		LRK54_RS12200	0.34	-1.3
2,713,851	+		LRK54_RS12200	0.34	+0.3