Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05645

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
1,214,579	+				-1.5
1,214,594	+				-1.4
1,214,611	+				-0.8
1,214,611	+				+0.6
1,214,611	+				+0.4
1,214,611	+				-1.0
1,214,611	+				+0.8
1,214,611	+				-0.2
1,214,611	+				+0.6
1,214,612	-				+0.3
1,214,612	-				-0.5
1,214,612	-				-0.6
1,214,612	-				+1.8
1,214,612	-				+0.3
1,214,629	+				+1.0
1,214,630	-				+0.7
1,214,755	+		LRK54_RS05640	0.21	+0.4
1,214,755	+		LRK54_RS05640	0.21	+2.4
1,214,755	+		LRK54_RS05640	0.21	+0.8
1,214,755	+		LRK54_RS05640	0.21	+0.1
1,214,755	+		LRK54_RS05640	0.21	-1.8
1,214,756	-		LRK54_RS05640	0.21	+0.3
1,214,783	+		LRK54_RS05640	0.24	-0.7
1,214,783	+		LRK54_RS05640	0.24	-1.0
1,214,783	+		LRK54_RS05640	0.24	-0.2
1,214,783	+		LRK54_RS05640	0.24	-0.6
1,214,784	-		LRK54_RS05640	0.24	+0.4
1,214,784	-		LRK54_RS05640	0.24	+2.2
1,214,784	-		LRK54_RS05640	0.24	-0.7
1,214,784	-		LRK54_RS05640	0.24	+0.1
1,214,807	+		LRK54_RS05640	0.26	-1.5
1,214,808	-		LRK54_RS05640	0.26	-0.4
1,214,808	-		LRK54_RS05640	0.26	+0.8
1,214,874	+		LRK54_RS05640	0.33	-1.5
1,215,006	+		LRK54_RS05640	0.47	-0.7
1,215,007	-		LRK54_RS05640	0.47	+0.4
1,215,007	-		LRK54_RS05640	0.47	+1.4
1,215,038	+		LRK54_RS05640	0.50	+1.3
1,215,038	+		LRK54_RS05640	0.50	+0.1
1,215,038	+		LRK54_RS05640	0.50	-0.6
1,215,038	+		LRK54_RS05640	0.50	-0.6
1,215,038	+		LRK54_RS05640	0.50	-1.4
1,215,038	+		LRK54_RS05640	0.50	+0.4
1,215,038	+		LRK54_RS05640	0.50	+0.8
1,215,038	+		LRK54_RS05640	0.50	-0.4
1,215,038	+		LRK54_RS05640	0.50	-2.4
1,215,038	+		LRK54_RS05640	0.50	-0.1
1,215,039	-		LRK54_RS05640	0.50	-0.6
1,215,039	-		LRK54_RS05640	0.50	+0.4
1,215,039	-		LRK54_RS05640	0.50	-0.5
1,215,039	-		LRK54_RS05640	0.50	-0.6
1,215,039	-		LRK54_RS05640	0.50	-1.0
1,215,044	+		LRK54_RS05640	0.51	+1.4
1,215,044	+		LRK54_RS05640	0.51	-0.8
1,215,045	-		LRK54_RS05640	0.51	-0.2
1,215,045	-		LRK54_RS05640	0.51	+0.8
1,215,086	+		LRK54_RS05640	0.55	-1.2
1,215,086	+		LRK54_RS05640	0.55	-1.3
1,215,103	+		LRK54_RS05640	0.57	-1.0
1,215,152	+		LRK54_RS05640	0.62	-1.2
1,215,152	+		LRK54_RS05640	0.62	-1.3
1,215,152	+		LRK54_RS05640	0.62	+0.8
1,215,152	+		LRK54_RS05640	0.62	-0.2
1,215,153	-		LRK54_RS05640	0.62	-0.4
1,215,153	-		LRK54_RS05640	0.62	+1.2
1,215,153	-		LRK54_RS05640	0.62	-0.2
1,215,153	-		LRK54_RS05640	0.62	+0.5
1,215,215	+		LRK54_RS05640	0.68	-0.6
1,215,215	+		LRK54_RS05640	0.68	-0.1
1,215,215	+		LRK54_RS05640	0.68	-1.0
1,215,215	+		LRK54_RS05640	0.68	+1.1
1,215,215	+		LRK54_RS05640	0.68	-0.3
1,215,215	+		LRK54_RS05640	0.68	+0.8
1,215,216	-		LRK54_RS05640	0.69	-2.0
1,215,216	-		LRK54_RS05640	0.69	-0.0
1,215,216	-		LRK54_RS05640	0.69	-0.4
1,215,284	+		LRK54_RS05640	0.76	+0.3
1,215,284	+		LRK54_RS05640	0.76	-1.7
1,215,284	+		LRK54_RS05640	0.76	-0.8
1,215,285	-		LRK54_RS05640	0.76	+0.1
1,215,285	-		LRK54_RS05640	0.76	+1.3
1,215,285	-		LRK54_RS05640	0.76	-1.2
1,215,305	+		LRK54_RS05640	0.78	+0.3
1,215,305	+		LRK54_RS05640	0.78	+0.3
1,215,305	+		LRK54_RS05640	0.78	-0.6
1,215,305	+		LRK54_RS05640	0.78	-1.5
1,215,305	+		LRK54_RS05640	0.78	+0.6
1,215,305	+		LRK54_RS05640	0.78	+0.1
1,215,305	+		LRK54_RS05640	0.78	+0.1
1,215,305	+		LRK54_RS05640	0.78	-0.7
1,215,305	+		LRK54_RS05640	0.78	-0.4
1,215,305	+		LRK54_RS05640	0.78	-0.4
1,215,305	+		LRK54_RS05640	0.78	+0.3
1,215,305	+		LRK54_RS05640	0.78	-0.3
1,215,305	+		LRK54_RS05640	0.78	+0.8
1,215,305	+		LRK54_RS05640	0.78	-1.3
1,215,305	+		LRK54_RS05640	0.78	-1.0
1,215,305	+		LRK54_RS05640	0.78	-0.2
1,215,305	+		LRK54_RS05640	0.78	-1.2
1,215,306	-		LRK54_RS05640	0.78	+0.1
1,215,306	-		LRK54_RS05640	0.78	-1.0
1,215,306	-		LRK54_RS05640	0.78	+0.8
1,215,306	-		LRK54_RS05640	0.78	+2.2
1,215,306	-		LRK54_RS05640	0.78	+0.3
1,215,306	-		LRK54_RS05640	0.78	+0.6
1,215,306	-		LRK54_RS05640	0.78	-0.7
1,215,306	-		LRK54_RS05640	0.78	-1.0
1,215,306	-		LRK54_RS05640	0.78	+0.4
1,215,306	-		LRK54_RS05640	0.78	-1.2
1,215,425	+				+0.4
1,215,425	+				-0.2
1,215,476	+				-0.2
1,215,477	-				-0.6
1,215,505	+				-1.7
1,215,505	+				-2.2
1,215,505	+				-1.4
1,215,506	-				+0.6
1,215,506	-				+0.8
1,215,506	-				-0.6
1,215,506	-				-2.2
1,215,511	+				-0.9
1,215,511	+				+2.4
1,215,511	+				+0.4
1,215,511	+				-0.6
1,215,511	+				+0.8
1,215,511	+				+1.4
1,215,511	+				+1.3
1,215,511	+				+0.6
1,215,511	+				+1.4
1,215,511	+				-0.3
1,215,512	-				-1.0
1,215,512	-				+0.1
1,215,512	-				-1.6
1,215,512	-				-1.3
1,215,512	-				-0.5
1,215,512	-				+1.1
1,215,512	-				+1.2
1,215,525	+				+0.0
1,215,525	+				+1.8
1,215,525	+				-1.2
1,215,525	+				-1.0
1,215,525	+				-1.1
1,215,525	+				+1.1
1,215,525	+				+1.0
1,215,525	+				-0.9
1,215,525	+				+0.1
1,215,526	-				+3.4
1,215,526	-				-0.4
1,215,526	-				+1.1
1,215,526	-				-0.8
1,215,533	+				-0.2
1,215,534	-				-0.1
1,215,534	-				+0.4
1,215,605	+				+0.8
1,215,611	+				+1.6
1,215,612	-				+1.0
1,215,612	-				+0.8
1,215,612	-				+0.1
1,215,612	-				-0.4
1,215,612	-				+0.1
1,215,620	+				-1.2
1,215,621	-				-0.7
1,215,935	+				-0.2
1,215,941	+				-1.2
1,215,997	+		LRK54_RS05645	0.10	+0.6
1,215,998	-		LRK54_RS05645	0.10	+1.1
1,216,162	+		LRK54_RS05645	0.14	+0.8
1,216,162	+		LRK54_RS05645	0.14	+0.1
1,216,175	+		LRK54_RS05645	0.14	-0.4
1,216,175	+		LRK54_RS05645	0.14	-1.0
1,216,175	+		LRK54_RS05645	0.14	-0.1
1,216,175	+		LRK54_RS05645	0.14	+0.7
1,216,175	+		LRK54_RS05645	0.14	-0.4
1,216,175	+		LRK54_RS05645	0.14	+1.0
1,216,175	+		LRK54_RS05645	0.14	-1.7
1,216,175	+		LRK54_RS05645	0.14	-1.3
1,216,175	+		LRK54_RS05645	0.14	+0.8
1,216,176	-		LRK54_RS05645	0.14	+0.4
1,216,176	-		LRK54_RS05645	0.14	-1.8
1,216,176	-		LRK54_RS05645	0.14	+0.4
1,216,176	-		LRK54_RS05645	0.14	-0.6
1,216,176	-		LRK54_RS05645	0.14	-0.4
1,216,176	-		LRK54_RS05645	0.14	-0.6
1,216,176	-		LRK54_RS05645	0.14	+1.4
1,216,176	-		LRK54_RS05645	0.14	-1.3
1,216,176	-		LRK54_RS05645	0.14	+0.8
1,216,176	-		LRK54_RS05645	0.14	-0.2
1,216,176	-		LRK54_RS05645	0.14	-1.5
1,216,176	-		LRK54_RS05645	0.14	-0.2
1,216,193	-		LRK54_RS05645	0.15	-0.6
1,216,246	+		LRK54_RS05645	0.16	+0.4
1,216,247	-		LRK54_RS05645	0.16	-0.6
1,216,247	-		LRK54_RS05645	0.16	-0.7
1,216,247	-		LRK54_RS05645	0.16	-0.5
1,216,249	+		LRK54_RS05645	0.16	-0.6
1,216,249	+		LRK54_RS05645	0.16	-1.2
1,216,249	+		LRK54_RS05645	0.16	-1.0
1,216,250	-		LRK54_RS05645	0.16	-1.0
1,216,250	-		LRK54_RS05645	0.16	-0.3
1,216,250	-		LRK54_RS05645	0.16	-0.8
1,216,378	+		LRK54_RS05645	0.19	-0.6
1,216,378	+		LRK54_RS05645	0.19	-0.7
1,216,379	-		LRK54_RS05645	0.19	+0.6
1,216,381	+		LRK54_RS05645	0.19	-2.0
1,216,381	+		LRK54_RS05645	0.19	-1.0
1,216,381	+		LRK54_RS05645	0.19	-0.4
1,216,382	-		LRK54_RS05645	0.19	+0.1
1,216,382	-		LRK54_RS05645	0.19	+0.3
1,216,402	+		LRK54_RS05645	0.19	-1.3
1,216,402	+		LRK54_RS05645	0.19	+0.6
1,216,468	+		LRK54_RS05645	0.21	+0.4
1,216,522	+		LRK54_RS05645	0.22	+0.3
1,216,522	+		LRK54_RS05645	0.22	+0.1
1,216,522	+		LRK54_RS05645	0.22	+0.1
1,216,522	+		LRK54_RS05645	0.22	-1.3
1,216,522	+		LRK54_RS05645	0.22	+1.4
1,216,522	+		LRK54_RS05645	0.22	-0.4
1,216,522	+		LRK54_RS05645	0.22	+0.7
1,216,522	+		LRK54_RS05645	0.22	+0.1
1,216,522	+		LRK54_RS05645	0.22	+1.1
1,216,523	-		LRK54_RS05645	0.22	+3.0
1,216,523	-		LRK54_RS05645	0.22	+2.8
1,216,523	-		LRK54_RS05645	0.22	+1.4
1,216,523	-		LRK54_RS05645	0.22	-0.2
1,216,523	-		LRK54_RS05645	0.22	-0.7
1,216,562	-		LRK54_RS05645	0.23	-0.4
1,216,574	-		LRK54_RS05645	0.23	-1.6
1,216,681	+		LRK54_RS05645	0.26	+0.1
1,216,681	+		LRK54_RS05645	0.26	+0.4
1,216,681	+		LRK54_RS05645	0.26	+1.4
1,216,681	+		LRK54_RS05645	0.26	-0.4
1,216,681	+		LRK54_RS05645	0.26	-1.4
1,216,681	+		LRK54_RS05645	0.26	-2.0
1,216,682	-		LRK54_RS05645	0.26	+0.4
1,216,682	-		LRK54_RS05645	0.26	-2.3
1,216,682	-		LRK54_RS05645	0.26	-0.7
1,216,682	-		LRK54_RS05645	0.26	-1.3
1,216,682	-		LRK54_RS05645	0.26	+0.8
1,216,682	-		LRK54_RS05645	0.26	-0.2
1,216,682	-		LRK54_RS05645	0.26	+1.4
1,216,682	-		LRK54_RS05645	0.26	-0.6
1,216,751	+		LRK54_RS05645	0.27	+0.1
1,216,812	+		LRK54_RS05645	0.29	-1.0
1,216,812	+		LRK54_RS05645	0.29	-0.8
1,216,819	+		LRK54_RS05645	0.29	-0.2
1,216,820	-		LRK54_RS05645	0.29	+0.4
1,216,894	+		LRK54_RS05645	0.31	+1.8
1,216,895	-		LRK54_RS05645	0.31	-1.6
1,216,895	-		LRK54_RS05645	0.31	-1.2
1,216,895	-		LRK54_RS05645	0.31	-1.1
1,216,895	-		LRK54_RS05645	0.31	-1.9
1,216,895	-		LRK54_RS05645	0.31	+2.4
1,216,897	+		LRK54_RS05645	0.31	+1.2
1,216,897	+		LRK54_RS05645	0.31	+0.1
1,216,898	-		LRK54_RS05645	0.31	+2.4
1,216,898	-		LRK54_RS05645	0.31	-0.7
1,216,898	-		LRK54_RS05645	0.31	-0.9
1,216,952	-		LRK54_RS05645	0.32	+1.0
1,216,963	+		LRK54_RS05645	0.32	-0.9
1,216,963	+		LRK54_RS05645	0.32	-0.9
1,216,963	+		LRK54_RS05645	0.32	+1.1
1,216,963	+		LRK54_RS05645	0.32	+2.2
1,216,963	+		LRK54_RS05645	0.32	+1.1
1,216,963	+		LRK54_RS05645	0.32	+0.1
1,216,963	+		LRK54_RS05645	0.32	-3.9
1,216,963	+		LRK54_RS05645	0.32	+0.3
1,216,963	+		LRK54_RS05645	0.32	-0.4
1,216,963	+		LRK54_RS05645	0.32	-1.5
1,216,964	-		LRK54_RS05645	0.32	-0.6
1,216,964	-		LRK54_RS05645	0.32	-0.2
1,216,964	-		LRK54_RS05645	0.32	-1.5
1,216,964	-		LRK54_RS05645	0.32	+0.1
1,216,964	-		LRK54_RS05645	0.32	-0.6
1,216,964	-		LRK54_RS05645	0.32	-0.2
1,216,965	+		LRK54_RS05645	0.32	-0.9
1,216,965	+		LRK54_RS05645	0.32	-1.0
1,216,965	+		LRK54_RS05645	0.32	+0.6
1,216,965	+		LRK54_RS05645	0.32	+2.4
1,216,965	+		LRK54_RS05645	0.32	+1.1
1,216,965	+		LRK54_RS05645	0.32	-0.7
1,216,965	+		LRK54_RS05645	0.32	+0.1
1,216,965	+		LRK54_RS05645	0.32	+1.0
1,216,965	+		LRK54_RS05645	0.32	+0.1
1,216,965	+		LRK54_RS05645	0.32	-0.7
1,216,966	-		LRK54_RS05645	0.32	+0.4
1,217,032	+		LRK54_RS05645	0.34	+0.8
1,217,033	-		LRK54_RS05645	0.34	-0.8
1,217,050	+		LRK54_RS05645	0.34	-1.2
1,217,050	+		LRK54_RS05645	0.34	-1.7
1,217,050	+		LRK54_RS05645	0.34	-1.8
1,217,050	+		LRK54_RS05645	0.34	+0.4
1,217,050	+		LRK54_RS05645	0.34	-0.6
1,217,051	-		LRK54_RS05645	0.34	-0.7
1,217,051	-		LRK54_RS05645	0.34	-0.2
1,217,051	-		LRK54_RS05645	0.34	+0.4
1,217,051	-		LRK54_RS05645	0.34	+0.8
1,217,051	-		LRK54_RS05645	0.34	-0.6
1,217,051	-		LRK54_RS05645	0.34	-0.7
1,217,056	+		LRK54_RS05645	0.34	-0.6
1,217,056	+		LRK54_RS05645	0.34	-0.8
1,217,056	+		LRK54_RS05645	0.34	-1.5
1,217,056	+		LRK54_RS05645	0.34	-1.9
1,217,056	+		LRK54_RS05645	0.34	-2.5
1,217,056	+		LRK54_RS05645	0.34	-1.7
1,217,056	+		LRK54_RS05645	0.34	-0.6
1,217,057	-		LRK54_RS05645	0.34	-0.9
1,217,057	-		LRK54_RS05645	0.34	-1.2
1,217,057	-		LRK54_RS05645	0.34	+0.3
1,217,057	-		LRK54_RS05645	0.34	+0.3
1,217,057	-		LRK54_RS05645	0.34	+0.1
1,217,057	-		LRK54_RS05645	0.34	-0.2
1,217,057	-		LRK54_RS05645	0.34	-1.2
1,217,057	-		LRK54_RS05645	0.34	-0.6
1,217,057	-		LRK54_RS05645	0.34	+1.1
1,217,057	-		LRK54_RS05645	0.34	-1.3
1,217,057	-		LRK54_RS05645	0.34	-0.9
1,217,057	-		LRK54_RS05645	0.34	-1.4
1,217,089	+		LRK54_RS05645	0.35	-1.6
1,217,089	+		LRK54_RS05645	0.35	-0.4
1,217,089	+		LRK54_RS05645	0.35	-0.7
1,217,089	+		LRK54_RS05645	0.35	+0.8
1,217,090	-		LRK54_RS05645	0.35	+1.1
1,217,090	-		LRK54_RS05645	0.35	-1.5
1,217,090	-		LRK54_RS05645	0.35	-0.4
1,217,257	+		LRK54_RS05645	0.39	-2.5
1,217,257	+		LRK54_RS05645	0.39	-0.7
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