Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04310

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04300 and LRK54_RS04305 are separated by 53 nucleotidesLRK54_RS04305 and LRK54_RS04310 overlap by 4 nucleotidesLRK54_RS04310 and LRK54_RS04315 are separated by 108 nucleotidesLRK54_RS04315 and LRK54_RS04320 are separated by 5 nucleotides LRK54_RS04300: LRK54_RS04300 - SDR family oxidoreductase, at 909,122 to 909,955 _RS04300 LRK54_RS04305: LRK54_RS04305 - shikimate kinase, at 910,009 to 910,563 _RS04305 LRK54_RS04310: LRK54_RS04310 - 3-dehydroquinate synthase, at 910,560 to 911,651 _RS04310 LRK54_RS04315: LRK54_RS04315 - WGR domain-containing protein, at 911,760 to 912,020 _RS04315 LRK54_RS04320: LRK54_RS04320 - uroporphyrinogen decarboxylase, at 912,026 to 913,096 _RS04320 Position (kb) 910 911 912Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 909.621 kb on + strand, within LRK54_RS04300at 909.621 kb on + strand, within LRK54_RS04300at 909.621 kb on + strand, within LRK54_RS04300at 909.622 kb on - strand, within LRK54_RS04300at 909.622 kb on - strand, within LRK54_RS04300at 909.622 kb on - strand, within LRK54_RS04300at 909.623 kb on + strand, within LRK54_RS04300at 909.623 kb on + strand, within LRK54_RS04300at 909.623 kb on + strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.624 kb on - strand, within LRK54_RS04300at 909.717 kb on + strand, within LRK54_RS04300at 909.717 kb on + strand, within LRK54_RS04300at 909.717 kb on + strand, within LRK54_RS04300at 909.717 kb on + strand, within LRK54_RS04300at 909.718 kb on - strand, within LRK54_RS04300at 909.718 kb on - strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.753 kb on + strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.754 kb on - strand, within LRK54_RS04300at 909.997 kb on + strandat 909.997 kb on + strandat 909.997 kb on + strandat 909.997 kb on + strandat 909.998 kb on - strandat 909.998 kb on - strandat 909.998 kb on - strandat 909.998 kb on - strandat 910.090 kb on + strand, within LRK54_RS04305at 910.090 kb on + strand, within LRK54_RS04305at 910.090 kb on + strand, within LRK54_RS04305at 910.090 kb on + strand, within LRK54_RS04305at 910.090 kb on + strand, within LRK54_RS04305at 910.090 kb on + strand, within LRK54_RS04305at 910.303 kb on + strand, within LRK54_RS04305at 910.303 kb on + strand, within LRK54_RS04305at 910.303 kb on + strand, within LRK54_RS04305at 911.623 kb on + strandat 911.623 kb on + strandat 911.623 kb on + strandat 911.623 kb on + strandat 911.623 kb on + strandat 911.623 kb on + strandat 911.623 kb on + strandat 911.624 kb on - strandat 911.708 kb on + strandat 911.708 kb on + strandat 911.708 kb on + strandat 911.708 kb on + strandat 911.709 kb on - strandat 911.709 kb on - strandat 911.709 kb on - strandat 911.710 kb on + strandat 911.710 kb on + strandat 911.711 kb on - strandat 911.711 kb on - strandat 911.711 kb on - strandat 911.769 kb on + strandat 911.769 kb on + strandat 911.769 kb on + strandat 911.808 kb on + strand, within LRK54_RS04315at 911.808 kb on + strand, within LRK54_RS04315at 911.856 kb on + strand, within LRK54_RS04315at 912.009 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
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909,621 + LRK54_RS04300 0.60 -2.9
909,621 + LRK54_RS04300 0.60 +1.8
909,621 + LRK54_RS04300 0.60 +0.4
909,622 - LRK54_RS04300 0.60 +0.4
909,622 - LRK54_RS04300 0.60 -0.1
909,622 - LRK54_RS04300 0.60 -0.1
909,623 + LRK54_RS04300 0.60 -0.5
909,623 + LRK54_RS04300 0.60 -2.1
909,623 + LRK54_RS04300 0.60 -0.4
909,624 - LRK54_RS04300 0.60 -0.6
909,624 - LRK54_RS04300 0.60 -1.4
909,624 - LRK54_RS04300 0.60 -2.3
909,624 - LRK54_RS04300 0.60 +0.4
909,624 - LRK54_RS04300 0.60 -1.7
909,624 - LRK54_RS04300 0.60 +0.2
909,624 - LRK54_RS04300 0.60 +0.7
909,624 - LRK54_RS04300 0.60 +0.6
909,624 - LRK54_RS04300 0.60 -0.6
909,624 - LRK54_RS04300 0.60 +0.5
909,717 + LRK54_RS04300 0.71 -0.6
909,717 + LRK54_RS04300 0.71 -1.1
909,717 + LRK54_RS04300 0.71 -0.0
909,717 + LRK54_RS04300 0.71 -0.4
909,718 - LRK54_RS04300 0.71 -0.6
909,718 - LRK54_RS04300 0.71 -1.0
909,753 + LRK54_RS04300 0.76 -0.8
909,753 + LRK54_RS04300 0.76 -1.7
909,753 + LRK54_RS04300 0.76 -0.3
909,753 + LRK54_RS04300 0.76 +0.5
909,753 + LRK54_RS04300 0.76 +0.4
909,753 + LRK54_RS04300 0.76 +0.0
909,753 + LRK54_RS04300 0.76 -0.6
909,754 - LRK54_RS04300 0.76 +0.1
909,754 - LRK54_RS04300 0.76 -0.7
909,754 - LRK54_RS04300 0.76 -1.5
909,754 - LRK54_RS04300 0.76 -1.0
909,754 - LRK54_RS04300 0.76 -1.7
909,754 - LRK54_RS04300 0.76 -0.7
909,754 - LRK54_RS04300 0.76 -0.8
909,754 - LRK54_RS04300 0.76 +0.5
909,754 - LRK54_RS04300 0.76 +0.4
909,754 - LRK54_RS04300 0.76 +0.1
909,754 - LRK54_RS04300 0.76 +0.4
909,754 - LRK54_RS04300 0.76 +0.0
909,754 - LRK54_RS04300 0.76 -0.6
909,997 + -1.0
909,997 + -0.4
909,997 + +0.2
909,997 + +0.8
909,998 - +0.8
909,998 - -0.1
909,998 - -0.4
909,998 - -0.9
910,090 + LRK54_RS04305 0.15 -0.6
910,090 + LRK54_RS04305 0.15 +0.8
910,090 + LRK54_RS04305 0.15 -0.2
910,090 + LRK54_RS04305 0.15 -2.5
910,090 + LRK54_RS04305 0.15 -0.7
910,090 + LRK54_RS04305 0.15 -1.7
910,303 + LRK54_RS04305 0.53 -2.0
910,303 + LRK54_RS04305 0.53 -1.0
910,303 + LRK54_RS04305 0.53 -1.0
911,623 + +1.4
911,623 + +0.1
911,623 + -2.9
911,623 + -2.7
911,623 + -0.2
911,623 + -1.0
911,623 + +0.1
911,624 - +0.4
911,708 + -1.8
911,708 + +1.4
911,708 + +0.6
911,708 + -1.2
911,709 - -1.1
911,709 - -1.9
911,709 - -1.3
911,710 + -1.5
911,710 + -0.2
911,711 - +0.1
911,711 - -2.2
911,711 - -0.6
911,769 + -0.6
911,769 + +0.7
911,769 + -0.2
911,808 + LRK54_RS04315 0.18 +0.2
911,808 + LRK54_RS04315 0.18 +0.2
911,856 + LRK54_RS04315 0.37 -0.8
912,009 + -0.3

Or see this region's nucleotide sequence