Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04050

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS04045 and LRK54_RS04050 are separated by 9 nucleotidesLRK54_RS04050 and LRK54_RS04055 overlap by 4 nucleotidesLRK54_RS04055 and LRK54_RS04060 are separated by 88 nucleotides LRK54_RS04045: LRK54_RS04045 - TonB-dependent receptor, at 854,280 to 856,535 _RS04045 LRK54_RS04050: LRK54_RS04050 - glycoside hydrolase, at 856,545 to 857,711 _RS04050 LRK54_RS04055: LRK54_RS04055 - hypothetical protein, at 857,708 to 858,166 _RS04055 LRK54_RS04060: LRK54_RS04060 - isoaspartyl peptidase/L-asparaginase, at 858,255 to 859,256 _RS04060 Position (kb) 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 855.547 kb on + strand, within LRK54_RS04045at 855.645 kb on + strand, within LRK54_RS04045at 855.646 kb on - strand, within LRK54_RS04045at 855.759 kb on + strand, within LRK54_RS04045at 856.357 kb on - strandat 856.483 kb on - strandat 856.551 kb on + strandat 856.551 kb on + strandat 856.782 kb on + strand, within LRK54_RS04050at 856.782 kb on + strand, within LRK54_RS04050at 856.782 kb on + strand, within LRK54_RS04050at 856.782 kb on + strand, within LRK54_RS04050at 856.782 kb on + strand, within LRK54_RS04050at 856.782 kb on + strand, within LRK54_RS04050at 856.783 kb on - strand, within LRK54_RS04050at 856.783 kb on - strand, within LRK54_RS04050at 856.783 kb on - strand, within LRK54_RS04050at 856.836 kb on + strand, within LRK54_RS04050at 856.836 kb on + strand, within LRK54_RS04050at 856.836 kb on + strand, within LRK54_RS04050at 856.836 kb on + strand, within LRK54_RS04050at 856.836 kb on + strand, within LRK54_RS04050at 856.836 kb on + strand, within LRK54_RS04050at 856.837 kb on - strand, within LRK54_RS04050at 856.837 kb on - strand, within LRK54_RS04050at 856.837 kb on - strand, within LRK54_RS04050at 856.840 kb on + strand, within LRK54_RS04050at 856.840 kb on + strand, within LRK54_RS04050at 856.840 kb on + strand, within LRK54_RS04050at 856.840 kb on + strand, within LRK54_RS04050at 856.840 kb on + strand, within LRK54_RS04050at 856.840 kb on + strand, within LRK54_RS04050at 856.840 kb on + strand, within LRK54_RS04050at 856.840 kb on + strand, within LRK54_RS04050at 856.840 kb on + strand, within LRK54_RS04050at 856.841 kb on - strand, within LRK54_RS04050at 856.841 kb on - strand, within LRK54_RS04050at 856.841 kb on - strand, within LRK54_RS04050at 856.841 kb on - strand, within LRK54_RS04050at 856.841 kb on - strand, within LRK54_RS04050at 856.841 kb on - strand, within LRK54_RS04050at 857.061 kb on + strand, within LRK54_RS04050at 857.061 kb on + strand, within LRK54_RS04050at 857.062 kb on - strand, within LRK54_RS04050at 857.079 kb on + strand, within LRK54_RS04050at 857.079 kb on + strand, within LRK54_RS04050at 857.079 kb on + strand, within LRK54_RS04050at 857.079 kb on + strand, within LRK54_RS04050at 857.080 kb on - strand, within LRK54_RS04050at 857.080 kb on - strand, within LRK54_RS04050at 857.080 kb on - strand, within LRK54_RS04050at 857.080 kb on - strand, within LRK54_RS04050at 857.080 kb on - strand, within LRK54_RS04050at 857.082 kb on + strand, within LRK54_RS04050at 857.082 kb on + strand, within LRK54_RS04050at 857.082 kb on + strand, within LRK54_RS04050at 857.082 kb on + strand, within LRK54_RS04050at 857.082 kb on + strand, within LRK54_RS04050at 857.082 kb on + strand, within LRK54_RS04050at 857.082 kb on + strand, within LRK54_RS04050at 857.082 kb on + strand, within LRK54_RS04050at 857.083 kb on - strand, within LRK54_RS04050at 857.083 kb on - strand, within LRK54_RS04050at 857.083 kb on - strand, within LRK54_RS04050at 857.083 kb on - strand, within LRK54_RS04050at 857.083 kb on - strand, within LRK54_RS04050at 857.214 kb on + strand, within LRK54_RS04050at 857.214 kb on + strand, within LRK54_RS04050at 857.214 kb on + strand, within LRK54_RS04050at 857.214 kb on + strand, within LRK54_RS04050at 857.215 kb on - strand, within LRK54_RS04050at 857.215 kb on - strand, within LRK54_RS04050at 857.215 kb on - strand, within LRK54_RS04050at 857.241 kb on + strand, within LRK54_RS04050at 857.242 kb on - strand, within LRK54_RS04050at 857.242 kb on - strand, within LRK54_RS04050at 857.242 kb on - strand, within LRK54_RS04050at 857.242 kb on - strand, within LRK54_RS04050at 857.242 kb on - strand, within LRK54_RS04050at 857.242 kb on - strand, within LRK54_RS04050at 857.242 kb on - strand, within LRK54_RS04050at 857.376 kb on + strand, within LRK54_RS04050at 857.376 kb on + strand, within LRK54_RS04050at 857.376 kb on + strand, within LRK54_RS04050at 857.377 kb on - strand, within LRK54_RS04050at 857.377 kb on - strand, within LRK54_RS04050at 857.524 kb on + strand, within LRK54_RS04050at 857.524 kb on + strand, within LRK54_RS04050at 857.524 kb on + strand, within LRK54_RS04050at 857.524 kb on + strand, within LRK54_RS04050at 857.524 kb on + strand, within LRK54_RS04050at 857.524 kb on + strand, within LRK54_RS04050at 857.524 kb on + strand, within LRK54_RS04050at 857.525 kb on - strand, within LRK54_RS04050at 857.525 kb on - strand, within LRK54_RS04050at 857.539 kb on - strand, within LRK54_RS04050at 857.540 kb on + strand, within LRK54_RS04050at 857.540 kb on + strand, within LRK54_RS04050at 857.540 kb on + strand, within LRK54_RS04050at 857.540 kb on + strand, within LRK54_RS04050at 857.540 kb on + strand, within LRK54_RS04050at 857.540 kb on + strand, within LRK54_RS04050at 857.541 kb on - strand, within LRK54_RS04050at 857.541 kb on - strand, within LRK54_RS04050at 857.541 kb on - strand, within LRK54_RS04050at 857.541 kb on - strand, within LRK54_RS04050at 857.541 kb on - strand, within LRK54_RS04050at 857.541 kb on - strand, within LRK54_RS04050at 857.541 kb on - strand, within LRK54_RS04050at 857.541 kb on - strand, within LRK54_RS04050at 857.541 kb on - strand, within LRK54_RS04050at 857.541 kb on - strand, within LRK54_RS04050at 858.003 kb on - strand, within LRK54_RS04055at 858.003 kb on - strand, within LRK54_RS04055at 858.165 kb on - strandat 858.165 kb on - strandat 858.165 kb on - strandat 858.230 kb on - strandat 858.256 kb on + strandat 858.256 kb on + strandat 858.256 kb on + strandat 858.256 kb on + strandat 858.256 kb on + strandat 858.256 kb on + strandat 858.256 kb on + strandat 858.256 kb on + strandat 858.256 kb on + strandat 858.256 kb on + strandat 858.257 kb on - strandat 858.257 kb on - strandat 858.257 kb on - strandat 858.257 kb on - strandat 858.257 kb on - strandat 858.257 kb on - strandat 858.257 kb on - strandat 858.257 kb on - strandat 858.272 kb on + strandat 858.273 kb on - strandat 858.325 kb on + strandat 858.325 kb on + strandat 858.325 kb on + strandat 858.325 kb on + strandat 858.326 kb on - strandat 858.326 kb on - strandat 858.370 kb on + strand, within LRK54_RS04060at 858.370 kb on + strand, within LRK54_RS04060at 858.370 kb on + strand, within LRK54_RS04060at 858.370 kb on + strand, within LRK54_RS04060at 858.370 kb on + strand, within LRK54_RS04060at 858.370 kb on + strand, within LRK54_RS04060at 858.370 kb on + strand, within LRK54_RS04060at 858.370 kb on + strand, within LRK54_RS04060at 858.370 kb on + strand, within LRK54_RS04060at 858.370 kb on + strand, within LRK54_RS04060at 858.371 kb on - strand, within LRK54_RS04060at 858.371 kb on - strand, within LRK54_RS04060at 858.371 kb on - strand, within LRK54_RS04060at 858.371 kb on - strand, within LRK54_RS04060at 858.371 kb on - strand, within LRK54_RS04060at 858.371 kb on - strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.550 kb on + strand, within LRK54_RS04060at 858.551 kb on - strand, within LRK54_RS04060at 858.551 kb on - strand, within LRK54_RS04060at 858.551 kb on - strand, within LRK54_RS04060at 858.551 kb on - strand, within LRK54_RS04060at 858.551 kb on - strand, within LRK54_RS04060at 858.551 kb on - strand, within LRK54_RS04060at 858.551 kb on - strand, within LRK54_RS04060at 858.598 kb on + strand, within LRK54_RS04060at 858.598 kb on + strand, within LRK54_RS04060at 858.598 kb on + strand, within LRK54_RS04060at 858.598 kb on + strand, within LRK54_RS04060at 858.599 kb on - strand, within LRK54_RS04060at 858.599 kb on - strand, within LRK54_RS04060at 858.599 kb on - strand, within LRK54_RS04060at 858.599 kb on - strand, within LRK54_RS04060at 858.599 kb on - strand, within LRK54_RS04060at 858.599 kb on - strand, within LRK54_RS04060

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
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855,547 + LRK54_RS04045 0.56 +0.1
855,645 + LRK54_RS04045 0.61 -0.2
855,646 - LRK54_RS04045 0.61 +1.1
855,759 + LRK54_RS04045 0.66 +0.4
856,357 - -0.2
856,483 - -0.9
856,551 + +0.3
856,551 + -0.0
856,782 + LRK54_RS04050 0.20 -0.9
856,782 + LRK54_RS04050 0.20 -0.4
856,782 + LRK54_RS04050 0.20 -0.9
856,782 + LRK54_RS04050 0.20 -0.8
856,782 + LRK54_RS04050 0.20 -2.2
856,782 + LRK54_RS04050 0.20 -0.2
856,783 - LRK54_RS04050 0.20 +0.8
856,783 - LRK54_RS04050 0.20 +0.4
856,783 - LRK54_RS04050 0.20 -0.9
856,836 + LRK54_RS04050 0.25 -0.7
856,836 + LRK54_RS04050 0.25 -0.3
856,836 + LRK54_RS04050 0.25 -2.1
856,836 + LRK54_RS04050 0.25 +0.4
856,836 + LRK54_RS04050 0.25 -0.6
856,836 + LRK54_RS04050 0.25 +0.1
856,837 - LRK54_RS04050 0.25 -0.2
856,837 - LRK54_RS04050 0.25 +0.1
856,837 - LRK54_RS04050 0.25 -0.2
856,840 + LRK54_RS04050 0.25 -0.3
856,840 + LRK54_RS04050 0.25 -1.0
856,840 + LRK54_RS04050 0.25 -0.4
856,840 + LRK54_RS04050 0.25 +1.4
856,840 + LRK54_RS04050 0.25 -0.7
856,840 + LRK54_RS04050 0.25 -1.8
856,840 + LRK54_RS04050 0.25 -0.4
856,840 + LRK54_RS04050 0.25 -2.3
856,840 + LRK54_RS04050 0.25 -1.2
856,841 - LRK54_RS04050 0.25 +0.4
856,841 - LRK54_RS04050 0.25 -0.2
856,841 - LRK54_RS04050 0.25 +1.4
856,841 - LRK54_RS04050 0.25 -1.0
856,841 - LRK54_RS04050 0.25 +1.1
856,841 - LRK54_RS04050 0.25 -2.3
857,061 + LRK54_RS04050 0.44 -1.0
857,061 + LRK54_RS04050 0.44 +3.4
857,062 - LRK54_RS04050 0.44 +1.7
857,079 + LRK54_RS04050 0.46 -0.2
857,079 + LRK54_RS04050 0.46 -0.7
857,079 + LRK54_RS04050 0.46 +1.4
857,079 + LRK54_RS04050 0.46 +1.3
857,080 - LRK54_RS04050 0.46 +0.4
857,080 - LRK54_RS04050 0.46 -2.6
857,080 - LRK54_RS04050 0.46 +0.1
857,080 - LRK54_RS04050 0.46 -1.3
857,080 - LRK54_RS04050 0.46 -0.0
857,082 + LRK54_RS04050 0.46 -0.9
857,082 + LRK54_RS04050 0.46 +0.1
857,082 + LRK54_RS04050 0.46 -0.6
857,082 + LRK54_RS04050 0.46 +1.8
857,082 + LRK54_RS04050 0.46 -0.2
857,082 + LRK54_RS04050 0.46 +0.8
857,082 + LRK54_RS04050 0.46 -1.0
857,082 + LRK54_RS04050 0.46 -1.5
857,083 - LRK54_RS04050 0.46 -1.0
857,083 - LRK54_RS04050 0.46 -0.7
857,083 - LRK54_RS04050 0.46 +0.1
857,083 - LRK54_RS04050 0.46 -1.5
857,083 - LRK54_RS04050 0.46 -2.8
857,214 + LRK54_RS04050 0.57 +0.4
857,214 + LRK54_RS04050 0.57 -0.9
857,214 + LRK54_RS04050 0.57 +0.1
857,214 + LRK54_RS04050 0.57 -1.4
857,215 - LRK54_RS04050 0.57 +0.3
857,215 - LRK54_RS04050 0.57 -0.9
857,215 - LRK54_RS04050 0.57 -2.0
857,241 + LRK54_RS04050 0.60 +0.1
857,242 - LRK54_RS04050 0.60 +0.3
857,242 - LRK54_RS04050 0.60 -1.3
857,242 - LRK54_RS04050 0.60 -1.7
857,242 - LRK54_RS04050 0.60 +2.0
857,242 - LRK54_RS04050 0.60 -2.2
857,242 - LRK54_RS04050 0.60 +0.8
857,242 - LRK54_RS04050 0.60 -2.0
857,376 + LRK54_RS04050 0.71 -0.2
857,376 + LRK54_RS04050 0.71 -0.2
857,376 + LRK54_RS04050 0.71 -1.3
857,377 - LRK54_RS04050 0.71 -0.6
857,377 - LRK54_RS04050 0.71 +0.1
857,524 + LRK54_RS04050 0.84 -0.6
857,524 + LRK54_RS04050 0.84 -0.4
857,524 + LRK54_RS04050 0.84 -0.4
857,524 + LRK54_RS04050 0.84 -2.1
857,524 + LRK54_RS04050 0.84 +1.4
857,524 + LRK54_RS04050 0.84 -1.5
857,524 + LRK54_RS04050 0.84 -0.4
857,525 - LRK54_RS04050 0.84 +1.0
857,525 - LRK54_RS04050 0.84 +1.4
857,539 - LRK54_RS04050 0.85 +1.3
857,540 + LRK54_RS04050 0.85 +1.0
857,540 + LRK54_RS04050 0.85 -0.0
857,540 + LRK54_RS04050 0.85 +1.4
857,540 + LRK54_RS04050 0.85 -0.1
857,540 + LRK54_RS04050 0.85 -1.7
857,540 + LRK54_RS04050 0.85 +0.6
857,541 - LRK54_RS04050 0.85 -0.7
857,541 - LRK54_RS04050 0.85 +0.1
857,541 - LRK54_RS04050 0.85 -0.6
857,541 - LRK54_RS04050 0.85 -1.0
857,541 - LRK54_RS04050 0.85 +0.8
857,541 - LRK54_RS04050 0.85 -0.4
857,541 - LRK54_RS04050 0.85 +0.1
857,541 - LRK54_RS04050 0.85 +0.3
857,541 - LRK54_RS04050 0.85 +0.4
857,541 - LRK54_RS04050 0.85 +0.7
858,003 - LRK54_RS04055 0.64 -1.2
858,003 - LRK54_RS04055 0.64 -0.2
858,165 - +0.3
858,165 - -1.3
858,165 - +0.0
858,230 - +0.6
858,256 + +0.2
858,256 + -1.3
858,256 + -2.3
858,256 + +0.2
858,256 + +0.7
858,256 + +0.5
858,256 + -0.7
858,256 + -0.7
858,256 + -1.2
858,256 + +0.9
858,257 - +0.3
858,257 - -0.3
858,257 - +2.4
858,257 - -1.5
858,257 - +1.3
858,257 - -0.6
858,257 - -1.0
858,257 - -0.3
858,272 + -0.1
858,273 - -1.3
858,325 + +0.8
858,325 + -1.4
858,325 + -0.1
858,325 + -2.3
858,326 - -1.7
858,326 - -1.4
858,370 + LRK54_RS04060 0.11 +0.8
858,370 + LRK54_RS04060 0.11 -1.9
858,370 + LRK54_RS04060 0.11 +1.4
858,370 + LRK54_RS04060 0.11 -2.3
858,370 + LRK54_RS04060 0.11 +0.1
858,370 + LRK54_RS04060 0.11 -0.4
858,370 + LRK54_RS04060 0.11 +0.1
858,370 + LRK54_RS04060 0.11 -2.0
858,370 + LRK54_RS04060 0.11 -1.2
858,370 + LRK54_RS04060 0.11 -0.2
858,371 - LRK54_RS04060 0.12 +1.4
858,371 - LRK54_RS04060 0.12 -0.3
858,371 - LRK54_RS04060 0.12 -0.5
858,371 - LRK54_RS04060 0.12 -2.4
858,371 - LRK54_RS04060 0.12 +0.6
858,371 - LRK54_RS04060 0.12 +0.0
858,550 + LRK54_RS04060 0.29 -1.4
858,550 + LRK54_RS04060 0.29 +1.4
858,550 + LRK54_RS04060 0.29 -0.3
858,550 + LRK54_RS04060 0.29 -0.0
858,550 + LRK54_RS04060 0.29 +0.3
858,550 + LRK54_RS04060 0.29 -1.4
858,550 + LRK54_RS04060 0.29 -3.2
858,550 + LRK54_RS04060 0.29 +0.1
858,550 + LRK54_RS04060 0.29 -1.9
858,550 + LRK54_RS04060 0.29 -1.1
858,550 + LRK54_RS04060 0.29 -1.5
858,550 + LRK54_RS04060 0.29 -0.7
858,550 + LRK54_RS04060 0.29 +0.1
858,550 + LRK54_RS04060 0.29 -0.9
858,550 + LRK54_RS04060 0.29 -2.0
858,550 + LRK54_RS04060 0.29 -0.3
858,551 - LRK54_RS04060 0.30 +1.4
858,551 - LRK54_RS04060 0.30 +0.0
858,551 - LRK54_RS04060 0.30 -0.4
858,551 - LRK54_RS04060 0.30 +0.8
858,551 - LRK54_RS04060 0.30 +0.3
858,551 - LRK54_RS04060 0.30 -0.8
858,551 - LRK54_RS04060 0.30 -0.2
858,598 + LRK54_RS04060 0.34 -1.2
858,598 + LRK54_RS04060 0.34 +2.0
858,598 + LRK54_RS04060 0.34 -0.2
858,598 + LRK54_RS04060 0.34 -1.2
858,599 - LRK54_RS04060 0.34 +0.4
858,599 - LRK54_RS04060 0.34 -0.7
858,599 - LRK54_RS04060 0.34 -0.4
858,599 - LRK54_RS04060 0.34 +0.4
858,599 - LRK54_RS04060 0.34 -0.9
858,599 - LRK54_RS04060 0.34 +0.1

Or see this region's nucleotide sequence