Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS03775

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS03765 and LRK54_RS03770 are separated by 67 nucleotidesLRK54_RS03770 and LRK54_RS03775 are separated by 80 nucleotidesLRK54_RS03775 and LRK54_RS03780 are separated by 96 nucleotidesLRK54_RS03780 and LRK54_RS03785 are separated by 79 nucleotides LRK54_RS03765: LRK54_RS03765 - hypothetical protein, at 795,632 to 795,958 _RS03765 LRK54_RS03770: LRK54_RS03770 - hypothetical protein, at 796,026 to 796,481 _RS03770 LRK54_RS03775: LRK54_RS03775 - hypothetical protein, at 796,562 to 796,843 _RS03775 LRK54_RS03780: LRK54_RS03780 - hypothetical protein, at 796,940 to 797,416 _RS03780 LRK54_RS03785: LRK54_RS03785 - hypothetical protein, at 797,496 to 797,696 _RS03785 Position (kb) 796 797Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 795.577 kb on - strandat 795.596 kb on + strandat 795.609 kb on - strandat 795.629 kb on + strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.682 kb on - strand, within LRK54_RS03765at 795.888 kb on - strand, within LRK54_RS03765at 795.909 kb on + strand, within LRK54_RS03765at 795.910 kb on - strand, within LRK54_RS03765at 795.930 kb on + strandat 795.931 kb on - strandat 795.931 kb on - strandat 795.958 kb on + strandat 795.959 kb on - strandat 795.959 kb on - strandat 796.027 kb on + strandat 796.082 kb on - strand, within LRK54_RS03770at 796.082 kb on - strand, within LRK54_RS03770at 796.142 kb on + strand, within LRK54_RS03770at 796.173 kb on + strand, within LRK54_RS03770at 796.173 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.200 kb on + strand, within LRK54_RS03770at 796.200 kb on + strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.247 kb on + strand, within LRK54_RS03770at 796.247 kb on + strand, within LRK54_RS03770at 796.317 kb on + strand, within LRK54_RS03770at 796.317 kb on + strand, within LRK54_RS03770at 796.317 kb on + strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.368 kb on + strand, within LRK54_RS03770at 796.368 kb on + strand, within LRK54_RS03770at 796.369 kb on - strand, within LRK54_RS03770at 796.369 kb on - strand, within LRK54_RS03770at 796.369 kb on - strand, within LRK54_RS03770at 796.377 kb on + strand, within LRK54_RS03770at 796.378 kb on - strand, within LRK54_RS03770at 796.405 kb on + strand, within LRK54_RS03770at 796.405 kb on + strand, within LRK54_RS03770at 796.406 kb on - strand, within LRK54_RS03770at 796.406 kb on - strand, within LRK54_RS03770at 796.465 kb on + strandat 796.465 kb on + strandat 796.466 kb on - strandat 796.466 kb on - strandat 796.481 kb on + strandat 796.482 kb on - strandat 796.501 kb on - strandat 796.563 kb on + strandat 796.564 kb on - strandat 796.597 kb on + strand, within LRK54_RS03775at 796.635 kb on - strand, within LRK54_RS03775at 796.692 kb on + strand, within LRK54_RS03775at 796.693 kb on - strand, within LRK54_RS03775at 796.693 kb on - strand, within LRK54_RS03775at 796.693 kb on - strand, within LRK54_RS03775at 796.696 kb on + strand, within LRK54_RS03775at 796.754 kb on + strand, within LRK54_RS03775at 796.754 kb on + strand, within LRK54_RS03775at 796.758 kb on + strand, within LRK54_RS03775at 796.759 kb on - strand, within LRK54_RS03775at 796.759 kb on - strand, within LRK54_RS03775at 796.781 kb on + strand, within LRK54_RS03775at 796.782 kb on - strand, within LRK54_RS03775at 796.814 kb on + strand, within LRK54_RS03775at 796.814 kb on + strand, within LRK54_RS03775at 796.814 kb on + strand, within LRK54_RS03775at 796.815 kb on - strandat 796.815 kb on - strandat 796.815 kb on - strandat 796.821 kb on - strandat 796.821 kb on - strandat 796.858 kb on + strandat 796.859 kb on - strandat 796.904 kb on + strandat 796.938 kb on - strandat 796.941 kb on + strandat 796.949 kb on + strandat 796.949 kb on + strandat 796.949 kb on + strandat 796.989 kb on + strand, within LRK54_RS03780at 796.989 kb on + strand, within LRK54_RS03780at 796.990 kb on - strand, within LRK54_RS03780at 796.990 kb on - strand, within LRK54_RS03780at 796.990 kb on - strand, within LRK54_RS03780at 796.990 kb on - strand, within LRK54_RS03780at 797.048 kb on + strand, within LRK54_RS03780at 797.057 kb on + strand, within LRK54_RS03780at 797.057 kb on + strand, within LRK54_RS03780at 797.105 kb on + strand, within LRK54_RS03780at 797.105 kb on + strand, within LRK54_RS03780at 797.105 kb on + strand, within LRK54_RS03780at 797.105 kb on + strand, within LRK54_RS03780at 797.106 kb on - strand, within LRK54_RS03780at 797.151 kb on - strand, within LRK54_RS03780at 797.151 kb on - strand, within LRK54_RS03780at 797.189 kb on + strand, within LRK54_RS03780at 797.249 kb on - strand, within LRK54_RS03780at 797.249 kb on - strand, within LRK54_RS03780at 797.249 kb on - strand, within LRK54_RS03780at 797.318 kb on - strand, within LRK54_RS03780at 797.324 kb on - strand, within LRK54_RS03780at 797.384 kb on + strandat 797.384 kb on + strandat 797.385 kb on - strandat 797.446 kb on + strandat 797.446 kb on + strandat 797.446 kb on + strandat 797.446 kb on + strandat 797.481 kb on + strandat 797.481 kb on + strandat 797.481 kb on + strandat 797.481 kb on + strandat 797.481 kb on + strandat 797.482 kb on - strandat 797.482 kb on - strandat 797.482 kb on - strandat 797.498 kb on - strandat 797.532 kb on - strand, within LRK54_RS03785at 797.532 kb on - strand, within LRK54_RS03785at 797.588 kb on + strand, within LRK54_RS03785at 797.589 kb on - strand, within LRK54_RS03785at 797.589 kb on - strand, within LRK54_RS03785at 797.589 kb on - strand, within LRK54_RS03785at 797.589 kb on - strand, within LRK54_RS03785at 797.596 kb on + strand, within LRK54_RS03785at 797.597 kb on + strand, within LRK54_RS03785at 797.597 kb on + strand, within LRK54_RS03785at 797.597 kb on + strand, within LRK54_RS03785at 797.598 kb on - strand, within LRK54_RS03785at 797.598 kb on - strand, within LRK54_RS03785at 797.768 kb on + strandat 797.768 kb on + strandat 797.769 kb on - strandat 797.769 kb on - strandat 797.769 kb on - strandat 797.830 kb on + strandat 797.830 kb on + strandat 797.831 kb on - strandat 797.831 kb on - strandat 797.831 kb on - strandat 797.831 kb on - strandat 797.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
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795,577 - +0.3
795,596 + -0.9
795,609 - -0.8
795,629 + -1.7
795,630 - -0.4
795,630 - -0.6
795,630 - +0.0
795,630 - -0.1
795,630 - +1.6
795,630 - +1.0
795,682 - LRK54_RS03765 0.15 -0.2
795,888 - LRK54_RS03765 0.78 +0.1
795,909 + LRK54_RS03765 0.85 -0.4
795,910 - LRK54_RS03765 0.85 -0.4
795,930 + -0.2
795,931 - -2.6
795,931 - +2.4
795,958 + +2.1
795,959 - +0.1
795,959 - -1.0
796,027 + +0.3
796,082 - LRK54_RS03770 0.12 -0.6
796,082 - LRK54_RS03770 0.12 +0.8
796,142 + LRK54_RS03770 0.25 -0.0
796,173 + LRK54_RS03770 0.32 +0.4
796,173 + LRK54_RS03770 0.32 +0.5
796,191 + LRK54_RS03770 0.36 -0.2
796,191 + LRK54_RS03770 0.36 -0.6
796,191 + LRK54_RS03770 0.36 -0.5
796,191 + LRK54_RS03770 0.36 +0.6
796,191 + LRK54_RS03770 0.36 +2.4
796,191 + LRK54_RS03770 0.36 +0.5
796,191 + LRK54_RS03770 0.36 -1.2
796,191 + LRK54_RS03770 0.36 -1.2
796,191 + LRK54_RS03770 0.36 -0.8
796,192 - LRK54_RS03770 0.36 -0.8
796,192 - LRK54_RS03770 0.36 -1.9
796,192 - LRK54_RS03770 0.36 +0.8
796,192 - LRK54_RS03770 0.36 -0.0
796,192 - LRK54_RS03770 0.36 -1.0
796,192 - LRK54_RS03770 0.36 +1.4
796,192 - LRK54_RS03770 0.36 +0.4
796,192 - LRK54_RS03770 0.36 -0.6
796,192 - LRK54_RS03770 0.36 -0.6
796,192 - LRK54_RS03770 0.36 +0.1
796,192 - LRK54_RS03770 0.36 -0.5
796,200 + LRK54_RS03770 0.38 +0.2
796,200 + LRK54_RS03770 0.38 -0.6
796,201 - LRK54_RS03770 0.38 +0.1
796,201 - LRK54_RS03770 0.38 +0.7
796,201 - LRK54_RS03770 0.38 -1.0
796,201 - LRK54_RS03770 0.38 -0.7
796,245 + LRK54_RS03770 0.48 -0.1
796,245 + LRK54_RS03770 0.48 +0.2
796,245 + LRK54_RS03770 0.48 -1.0
796,245 + LRK54_RS03770 0.48 -1.0
796,245 + LRK54_RS03770 0.48 +1.4
796,245 + LRK54_RS03770 0.48 -1.3
796,245 + LRK54_RS03770 0.48 -1.0
796,245 + LRK54_RS03770 0.48 -0.5
796,245 + LRK54_RS03770 0.48 +1.7
796,245 + LRK54_RS03770 0.48 +0.3
796,245 + LRK54_RS03770 0.48 -0.4
796,245 + LRK54_RS03770 0.48 +0.4
796,246 - LRK54_RS03770 0.48 -0.3
796,246 - LRK54_RS03770 0.48 -0.7
796,246 - LRK54_RS03770 0.48 -0.7
796,246 - LRK54_RS03770 0.48 -0.4
796,246 - LRK54_RS03770 0.48 -1.0
796,247 + LRK54_RS03770 0.48 +0.1
796,247 + LRK54_RS03770 0.48 -0.9
796,317 + LRK54_RS03770 0.64 -0.4
796,317 + LRK54_RS03770 0.64 -0.2
796,317 + LRK54_RS03770 0.64 -1.4
796,318 - LRK54_RS03770 0.64 -1.5
796,318 - LRK54_RS03770 0.64 +0.0
796,318 - LRK54_RS03770 0.64 -1.7
796,318 - LRK54_RS03770 0.64 +1.4
796,368 + LRK54_RS03770 0.75 -2.8
796,368 + LRK54_RS03770 0.75 -0.3
796,369 - LRK54_RS03770 0.75 +0.3
796,369 - LRK54_RS03770 0.75 -0.7
796,369 - LRK54_RS03770 0.75 -0.2
796,377 + LRK54_RS03770 0.77 -1.4
796,378 - LRK54_RS03770 0.77 +0.3
796,405 + LRK54_RS03770 0.83 -0.6
796,405 + LRK54_RS03770 0.83 +0.3
796,406 - LRK54_RS03770 0.83 -0.7
796,406 - LRK54_RS03770 0.83 -3.5
796,465 + -2.3
796,465 + -2.3
796,466 - -1.0
796,466 - +0.2
796,481 + -1.3
796,482 - -2.2
796,501 - +0.0
796,563 + -0.4
796,564 - -1.1
796,597 + LRK54_RS03775 0.12 +0.2
796,635 - LRK54_RS03775 0.26 -0.4
796,692 + LRK54_RS03775 0.46 +0.7
796,693 - LRK54_RS03775 0.46 -1.3
796,693 - LRK54_RS03775 0.46 -0.8
796,693 - LRK54_RS03775 0.46 -2.0
796,696 + LRK54_RS03775 0.48 -1.7
796,754 + LRK54_RS03775 0.68 -1.2
796,754 + LRK54_RS03775 0.68 -1.5
796,758 + LRK54_RS03775 0.70 -0.8
796,759 - LRK54_RS03775 0.70 -0.7
796,759 - LRK54_RS03775 0.70 -1.4
796,781 + LRK54_RS03775 0.78 -1.4
796,782 - LRK54_RS03775 0.78 -3.0
796,814 + LRK54_RS03775 0.89 -0.5
796,814 + LRK54_RS03775 0.89 -1.6
796,814 + LRK54_RS03775 0.89 +0.3
796,815 - -0.4
796,815 - +0.2
796,815 - +1.8
796,821 - -1.8
796,821 - +3.4
796,858 + -1.4
796,859 - -0.7
796,904 + -2.2
796,938 - -0.3
796,941 + +0.0
796,949 + +0.1
796,949 + -0.6
796,949 + -1.1
796,989 + LRK54_RS03780 0.10 -1.4
796,989 + LRK54_RS03780 0.10 -0.5
796,990 - LRK54_RS03780 0.10 -0.7
796,990 - LRK54_RS03780 0.10 -0.4
796,990 - LRK54_RS03780 0.10 +0.1
796,990 - LRK54_RS03780 0.10 -0.5
797,048 + LRK54_RS03780 0.23 +0.1
797,057 + LRK54_RS03780 0.25 +0.0
797,057 + LRK54_RS03780 0.25 +0.1
797,105 + LRK54_RS03780 0.35 -0.6
797,105 + LRK54_RS03780 0.35 -1.5
797,105 + LRK54_RS03780 0.35 +0.2
797,105 + LRK54_RS03780 0.35 +0.8
797,106 - LRK54_RS03780 0.35 +1.8
797,151 - LRK54_RS03780 0.44 -0.7
797,151 - LRK54_RS03780 0.44 -0.0
797,189 + LRK54_RS03780 0.52 -0.4
797,249 - LRK54_RS03780 0.65 -1.0
797,249 - LRK54_RS03780 0.65 -0.5
797,249 - LRK54_RS03780 0.65 -0.6
797,318 - LRK54_RS03780 0.79 -1.3
797,324 - LRK54_RS03780 0.81 -0.6
797,384 + -0.3
797,384 + -2.0
797,385 - -0.2
797,446 + -1.8
797,446 + -1.8
797,446 + -1.6
797,446 + -1.8
797,481 + -1.0
797,481 + +0.8
797,481 + +1.1
797,481 + -0.3
797,481 + -0.5
797,482 - +0.5
797,482 - -0.6
797,482 - +0.3
797,498 - +0.1
797,532 - LRK54_RS03785 0.18 -1.1
797,532 - LRK54_RS03785 0.18 -1.2
797,588 + LRK54_RS03785 0.46 -0.2
797,589 - LRK54_RS03785 0.46 -0.1
797,589 - LRK54_RS03785 0.46 +0.0
797,589 - LRK54_RS03785 0.46 -0.2
797,589 - LRK54_RS03785 0.46 +0.4
797,596 + LRK54_RS03785 0.50 -2.2
797,597 + LRK54_RS03785 0.50 -1.2
797,597 + LRK54_RS03785 0.50 -1.2
797,597 + LRK54_RS03785 0.50 -1.9
797,598 - LRK54_RS03785 0.51 +0.1
797,598 - LRK54_RS03785 0.51 -1.7
797,768 + -0.9
797,768 + +0.2
797,769 - +0.8
797,769 - +0.3
797,769 - -1.7
797,830 + +0.6
797,830 + -0.7
797,831 - -1.2
797,831 - -1.4
797,831 - -2.0
797,831 - +0.1
797,831 - -2.1

Or see this region's nucleotide sequence