Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03285 and LRK54_RS03290 are separated by 36 nucleotides LRK54_RS03290 and LRK54_RS03295 are separated by 192 nucleotides
LRK54_RS03285: LRK54_RS03285 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 706,039 to 707,214
_RS03285
LRK54_RS03290: LRK54_RS03290 - RIP metalloprotease RseP, at 707,251 to 708,597
_RS03290
LRK54_RS03295: LRK54_RS03295 - outer membrane protein assembly factor BamA, at 708,790 to 711,210
_RS03295
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.215 kb on + strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.216 kb on - strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.245 kb on + strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.246 kb on - strand at 707.455 kb on + strand, within LRK54_RS03290 at 707.455 kb on + strand, within LRK54_RS03290 at 707.455 kb on + strand, within LRK54_RS03290 at 707.872 kb on + strand, within LRK54_RS03290 at 707.872 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.457 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.460 kb on + strand, within LRK54_RS03290 at 708.520 kb on + strand at 708.565 kb on + strand at 708.565 kb on + strand at 708.565 kb on + strand at 708.565 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand at 708.771 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM remove 707,215 + +1.9 707,215 + +0.5 707,215 + +2.0 707,215 + +0.6 707,215 + -0.5 707,215 + -1.2 707,215 + -1.3 707,215 + +2.9 707,215 + +1.5 707,215 + +0.5 707,216 - -0.1 707,216 - +0.2 707,216 - -1.2 707,216 - -1.0 707,216 - -0.0 707,216 - -1.7 707,216 - +0.5 707,245 + +0.1 707,245 + +0.4 707,245 + -0.8 707,245 + -0.7 707,245 + -0.8 707,245 + -0.5 707,245 + -1.7 707,245 + +0.9 707,245 + +0.1 707,245 + +0.5 707,245 + -0.9 707,245 + -0.4 707,245 + -0.3 707,245 + +0.4 707,246 - -1.2 707,246 - -0.9 707,246 - -1.1 707,246 - +0.1 707,246 - -1.6 707,246 - -0.4 707,246 - +0.1 707,455 + LRK54_RS03290 0.15 -0.1 707,455 + LRK54_RS03290 0.15 +0.1 707,455 + LRK54_RS03290 0.15 -0.5 707,872 + LRK54_RS03290 0.46 -0.7 707,872 + LRK54_RS03290 0.46 +0.9 708,457 + LRK54_RS03290 0.90 +0.5 708,457 + LRK54_RS03290 0.90 -1.2 708,457 + LRK54_RS03290 0.90 -0.4 708,457 + LRK54_RS03290 0.90 +0.9 708,457 + LRK54_RS03290 0.90 +0.5 708,457 + LRK54_RS03290 0.90 -1.0 708,460 + LRK54_RS03290 0.90 -0.1 708,460 + LRK54_RS03290 0.90 -1.2 708,460 + LRK54_RS03290 0.90 -0.4 708,460 + LRK54_RS03290 0.90 -1.9 708,460 + LRK54_RS03290 0.90 -0.4 708,460 + LRK54_RS03290 0.90 -0.7 708,460 + LRK54_RS03290 0.90 -1.4 708,460 + LRK54_RS03290 0.90 -0.9 708,460 + LRK54_RS03290 0.90 -0.7 708,460 + LRK54_RS03290 0.90 +0.9 708,520 + -1.7 708,565 + +0.1 708,565 + -2.1 708,565 + -0.5 708,565 + -0.9 708,771 + -0.1 708,771 + +0.4 708,771 + -1.9 708,771 + +0.5 708,771 + -0.4 708,771 + -0.5 708,771 + -0.1
Or see this region's nucleotide sequence