Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS02855

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS02850 and LRK54_RS02855 are separated by 6 nucleotidesLRK54_RS02855 and LRK54_RS02860 are separated by 764 nucleotides LRK54_RS02850: LRK54_RS02850 - AAA family ATPase, at 609,841 to 611,001 _RS02850 LRK54_RS02855: LRK54_RS02855 - type I restriction-modification system subunit M, at 611,008 to 612,627 _RS02855 LRK54_RS02860: LRK54_RS02860 - type II toxin-antitoxin system HicB family antitoxin, at 613,392 to 613,811 _RS02860 Position (kb) 611 612 613Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 610.063 kb on + strand, within LRK54_RS02850at 610.063 kb on + strand, within LRK54_RS02850at 610.064 kb on - strand, within LRK54_RS02850at 610.064 kb on - strand, within LRK54_RS02850at 610.064 kb on - strand, within LRK54_RS02850at 610.169 kb on + strand, within LRK54_RS02850at 610.216 kb on + strand, within LRK54_RS02850at 610.217 kb on - strand, within LRK54_RS02850at 610.217 kb on - strand, within LRK54_RS02850at 610.217 kb on - strand, within LRK54_RS02850at 610.217 kb on - strand, within LRK54_RS02850at 610.217 kb on - strand, within LRK54_RS02850at 610.304 kb on - strand, within LRK54_RS02850at 610.304 kb on - strand, within LRK54_RS02850at 610.394 kb on + strand, within LRK54_RS02850at 610.395 kb on - strand, within LRK54_RS02850at 610.414 kb on + strand, within LRK54_RS02850at 610.414 kb on + strand, within LRK54_RS02850at 610.414 kb on + strand, within LRK54_RS02850at 610.414 kb on + strand, within LRK54_RS02850at 610.414 kb on + strand, within LRK54_RS02850at 610.414 kb on + strand, within LRK54_RS02850at 610.414 kb on + strand, within LRK54_RS02850at 610.414 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.429 kb on + strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.430 kb on - strand, within LRK54_RS02850at 610.435 kb on + strand, within LRK54_RS02850at 610.435 kb on + strand, within LRK54_RS02850at 610.435 kb on + strand, within LRK54_RS02850at 610.435 kb on + strand, within LRK54_RS02850at 610.435 kb on + strand, within LRK54_RS02850at 610.435 kb on + strand, within LRK54_RS02850at 610.435 kb on + strand, within LRK54_RS02850at 610.436 kb on - strand, within LRK54_RS02850at 610.436 kb on - strand, within LRK54_RS02850at 610.530 kb on - strand, within LRK54_RS02850at 610.530 kb on - strand, within LRK54_RS02850at 610.530 kb on - strand, within LRK54_RS02850at 610.530 kb on - strand, within LRK54_RS02850at 610.530 kb on - strand, within LRK54_RS02850at 610.603 kb on + strand, within LRK54_RS02850at 610.672 kb on + strand, within LRK54_RS02850at 610.672 kb on + strand, within LRK54_RS02850at 610.673 kb on - strand, within LRK54_RS02850at 610.673 kb on - strand, within LRK54_RS02850at 610.673 kb on - strand, within LRK54_RS02850at 610.673 kb on - strand, within LRK54_RS02850at 610.726 kb on + strand, within LRK54_RS02850at 610.726 kb on + strand, within LRK54_RS02850at 610.726 kb on + strand, within LRK54_RS02850at 610.726 kb on + strand, within LRK54_RS02850at 610.726 kb on + strand, within LRK54_RS02850at 610.727 kb on - strand, within LRK54_RS02850at 610.727 kb on - strand, within LRK54_RS02850at 610.727 kb on - strand, within LRK54_RS02850at 610.727 kb on - strand, within LRK54_RS02850at 610.727 kb on - strand, within LRK54_RS02850at 610.728 kb on + strand, within LRK54_RS02850at 610.728 kb on + strand, within LRK54_RS02850at 610.843 kb on + strand, within LRK54_RS02850at 610.880 kb on - strand, within LRK54_RS02850at 610.880 kb on - strand, within LRK54_RS02850at 610.888 kb on + strandat 610.888 kb on + strandat 610.888 kb on + strandat 610.889 kb on - strandat 610.889 kb on - strandat 610.999 kb on + strandat 610.999 kb on + strandat 610.999 kb on + strandat 610.999 kb on + strandat 610.999 kb on + strandat 611.000 kb on - strandat 611.000 kb on - strandat 611.000 kb on - strandat 611.000 kb on - strandat 611.000 kb on - strandat 611.000 kb on - strandat 611.101 kb on + strandat 611.102 kb on - strandat 611.117 kb on + strandat 611.117 kb on + strandat 611.118 kb on - strandat 611.129 kb on - strandat 611.143 kb on + strandat 611.143 kb on + strandat 611.143 kb on + strandat 611.143 kb on + strandat 611.143 kb on + strandat 611.144 kb on - strandat 611.144 kb on - strandat 611.144 kb on - strandat 611.293 kb on + strand, within LRK54_RS02855at 611.294 kb on - strand, within LRK54_RS02855at 611.294 kb on - strand, within LRK54_RS02855at 611.294 kb on - strand, within LRK54_RS02855at 611.294 kb on - strand, within LRK54_RS02855at 611.294 kb on - strand, within LRK54_RS02855at 611.294 kb on - strand, within LRK54_RS02855at 611.311 kb on + strand, within LRK54_RS02855at 611.311 kb on + strand, within LRK54_RS02855at 611.311 kb on + strand, within LRK54_RS02855at 611.390 kb on - strand, within LRK54_RS02855at 611.390 kb on - strand, within LRK54_RS02855at 611.390 kb on - strand, within LRK54_RS02855at 611.474 kb on - strand, within LRK54_RS02855at 611.570 kb on - strand, within LRK54_RS02855at 611.570 kb on - strand, within LRK54_RS02855at 611.570 kb on - strand, within LRK54_RS02855at 611.575 kb on + strand, within LRK54_RS02855at 611.576 kb on - strand, within LRK54_RS02855at 611.626 kb on + strand, within LRK54_RS02855at 611.626 kb on + strand, within LRK54_RS02855at 611.627 kb on - strand, within LRK54_RS02855at 611.627 kb on - strand, within LRK54_RS02855at 611.750 kb on + strand, within LRK54_RS02855at 611.806 kb on + strand, within LRK54_RS02855at 611.806 kb on + strand, within LRK54_RS02855at 611.807 kb on - strand, within LRK54_RS02855at 611.833 kb on + strand, within LRK54_RS02855at 611.833 kb on + strand, within LRK54_RS02855at 611.833 kb on + strand, within LRK54_RS02855at 611.833 kb on + strand, within LRK54_RS02855at 611.833 kb on + strand, within LRK54_RS02855at 611.833 kb on + strand, within LRK54_RS02855at 611.833 kb on + strand, within LRK54_RS02855at 611.834 kb on - strand, within LRK54_RS02855at 611.834 kb on - strand, within LRK54_RS02855at 611.834 kb on - strand, within LRK54_RS02855at 611.834 kb on - strand, within LRK54_RS02855at 611.834 kb on - strand, within LRK54_RS02855at 611.834 kb on - strand, within LRK54_RS02855at 611.835 kb on + strand, within LRK54_RS02855at 611.853 kb on + strand, within LRK54_RS02855at 611.853 kb on + strand, within LRK54_RS02855at 611.853 kb on + strand, within LRK54_RS02855at 611.853 kb on + strand, within LRK54_RS02855at 611.854 kb on - strand, within LRK54_RS02855at 611.854 kb on - strand, within LRK54_RS02855at 611.995 kb on + strand, within LRK54_RS02855at 611.996 kb on - strand, within LRK54_RS02855at 612.103 kb on + strand, within LRK54_RS02855at 612.103 kb on + strand, within LRK54_RS02855at 612.103 kb on + strand, within LRK54_RS02855at 612.104 kb on - strand, within LRK54_RS02855at 612.104 kb on - strand, within LRK54_RS02855at 612.104 kb on - strand, within LRK54_RS02855at 612.207 kb on + strand, within LRK54_RS02855at 612.207 kb on + strand, within LRK54_RS02855at 612.208 kb on - strand, within LRK54_RS02855at 612.244 kb on + strand, within LRK54_RS02855at 612.394 kb on + strand, within LRK54_RS02855at 612.394 kb on + strand, within LRK54_RS02855at 612.395 kb on - strand, within LRK54_RS02855at 612.395 kb on - strand, within LRK54_RS02855at 612.395 kb on - strand, within LRK54_RS02855at 612.463 kb on + strand, within LRK54_RS02855at 612.463 kb on + strand, within LRK54_RS02855at 612.464 kb on - strand, within LRK54_RS02855at 612.484 kb on + strandat 612.485 kb on - strandat 612.521 kb on + strandat 612.521 kb on + strandat 612.521 kb on + strandat 612.522 kb on - strandat 612.522 kb on - strandat 612.522 kb on - strandat 612.756 kb on + strandat 612.757 kb on - strandat 612.757 kb on - strandat 612.757 kb on - strandat 612.757 kb on - strandat 613.074 kb on + strandat 613.074 kb on + strandat 613.074 kb on + strandat 613.074 kb on + strandat 613.074 kb on + strandat 613.074 kb on + strandat 613.074 kb on + strandat 613.074 kb on + strandat 613.074 kb on + strandat 613.075 kb on - strandat 613.075 kb on - strandat 613.075 kb on - strandat 613.075 kb on - strandat 613.075 kb on - strandat 613.075 kb on - strandat 613.075 kb on - strandat 613.075 kb on - strandat 613.075 kb on - strandat 613.086 kb on - strandat 613.086 kb on - strandat 613.173 kb on + strandat 613.173 kb on + strandat 613.173 kb on + strandat 613.173 kb on + strandat 613.173 kb on + strandat 613.174 kb on - strandat 613.174 kb on - strandat 613.174 kb on - strandat 613.174 kb on - strandat 613.174 kb on - strandat 613.174 kb on - strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.323 kb on + strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.324 kb on - strandat 613.393 kb on + strandat 613.393 kb on + strandat 613.394 kb on - strandat 613.394 kb on - strandat 613.394 kb on - strandat 613.394 kb on - strandat 613.567 kb on + strand, within LRK54_RS02860

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
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610,063 + LRK54_RS02850 0.19 +1.0
610,063 + LRK54_RS02850 0.19 -2.2
610,064 - LRK54_RS02850 0.19 -0.4
610,064 - LRK54_RS02850 0.19 -0.8
610,064 - LRK54_RS02850 0.19 -0.8
610,169 + LRK54_RS02850 0.28 +0.4
610,216 + LRK54_RS02850 0.32 +1.3
610,217 - LRK54_RS02850 0.32 +0.7
610,217 - LRK54_RS02850 0.32 -0.1
610,217 - LRK54_RS02850 0.32 -0.7
610,217 - LRK54_RS02850 0.32 +0.4
610,217 - LRK54_RS02850 0.32 -1.8
610,304 - LRK54_RS02850 0.40 -1.0
610,304 - LRK54_RS02850 0.40 -0.1
610,394 + LRK54_RS02850 0.48 +0.3
610,395 - LRK54_RS02850 0.48 -0.6
610,414 + LRK54_RS02850 0.49 -1.4
610,414 + LRK54_RS02850 0.49 -1.1
610,414 + LRK54_RS02850 0.49 +0.1
610,414 + LRK54_RS02850 0.49 -0.2
610,414 + LRK54_RS02850 0.49 -1.6
610,414 + LRK54_RS02850 0.49 +0.7
610,414 + LRK54_RS02850 0.49 +0.9
610,414 + LRK54_RS02850 0.49 -1.3
610,429 + LRK54_RS02850 0.51 +1.1
610,429 + LRK54_RS02850 0.51 -1.3
610,429 + LRK54_RS02850 0.51 +0.0
610,429 + LRK54_RS02850 0.51 -0.1
610,429 + LRK54_RS02850 0.51 +0.3
610,429 + LRK54_RS02850 0.51 -1.0
610,429 + LRK54_RS02850 0.51 -0.3
610,429 + LRK54_RS02850 0.51 -0.3
610,429 + LRK54_RS02850 0.51 -0.8
610,429 + LRK54_RS02850 0.51 -1.5
610,429 + LRK54_RS02850 0.51 -1.6
610,429 + LRK54_RS02850 0.51 -0.6
610,429 + LRK54_RS02850 0.51 +1.1
610,429 + LRK54_RS02850 0.51 +0.1
610,429 + LRK54_RS02850 0.51 -1.3
610,429 + LRK54_RS02850 0.51 -0.1
610,430 - LRK54_RS02850 0.51 -0.0
610,430 - LRK54_RS02850 0.51 +2.2
610,430 - LRK54_RS02850 0.51 +0.2
610,430 - LRK54_RS02850 0.51 +1.0
610,430 - LRK54_RS02850 0.51 -0.1
610,430 - LRK54_RS02850 0.51 +0.7
610,430 - LRK54_RS02850 0.51 -0.0
610,430 - LRK54_RS02850 0.51 +0.3
610,430 - LRK54_RS02850 0.51 -0.3
610,430 - LRK54_RS02850 0.51 +0.1
610,430 - LRK54_RS02850 0.51 +1.7
610,430 - LRK54_RS02850 0.51 +0.2
610,435 + LRK54_RS02850 0.51 -0.6
610,435 + LRK54_RS02850 0.51 -0.7
610,435 + LRK54_RS02850 0.51 -1.0
610,435 + LRK54_RS02850 0.51 -0.9
610,435 + LRK54_RS02850 0.51 +0.5
610,435 + LRK54_RS02850 0.51 +0.1
610,435 + LRK54_RS02850 0.51 +0.2
610,436 - LRK54_RS02850 0.51 -1.4
610,436 - LRK54_RS02850 0.51 +1.2
610,530 - LRK54_RS02850 0.59 -1.3
610,530 - LRK54_RS02850 0.59 -2.0
610,530 - LRK54_RS02850 0.59 -2.1
610,530 - LRK54_RS02850 0.59 +0.1
610,530 - LRK54_RS02850 0.59 -1.6
610,603 + LRK54_RS02850 0.66 -2.4
610,672 + LRK54_RS02850 0.72 -1.0
610,672 + LRK54_RS02850 0.72 -0.0
610,673 - LRK54_RS02850 0.72 -1.5
610,673 - LRK54_RS02850 0.72 +1.4
610,673 - LRK54_RS02850 0.72 -1.8
610,673 - LRK54_RS02850 0.72 -0.1
610,726 + LRK54_RS02850 0.76 -1.6
610,726 + LRK54_RS02850 0.76 -1.5
610,726 + LRK54_RS02850 0.76 -0.5
610,726 + LRK54_RS02850 0.76 +0.1
610,726 + LRK54_RS02850 0.76 -0.1
610,727 - LRK54_RS02850 0.76 -1.4
610,727 - LRK54_RS02850 0.76 +0.4
610,727 - LRK54_RS02850 0.76 -1.9
610,727 - LRK54_RS02850 0.76 +1.0
610,727 - LRK54_RS02850 0.76 +1.0
610,728 + LRK54_RS02850 0.76 -0.4
610,728 + LRK54_RS02850 0.76 -0.6
610,843 + LRK54_RS02850 0.86 -0.3
610,880 - LRK54_RS02850 0.89 -0.5
610,880 - LRK54_RS02850 0.89 -1.0
610,888 + -0.6
610,888 + +0.4
610,888 + -0.4
610,889 - -1.0
610,889 - +2.4
610,999 + +0.5
610,999 + +1.8
610,999 + -0.1
610,999 + +0.9
610,999 + +0.4
611,000 - -0.3
611,000 - -1.1
611,000 - +2.4
611,000 - -0.6
611,000 - -0.6
611,000 - -1.1
611,101 + -0.1
611,102 - -0.9
611,117 + -1.4
611,117 + -1.7
611,118 - -0.4
611,129 - -0.9
611,143 + -0.9
611,143 + -0.1
611,143 + -0.4
611,143 + +0.9
611,143 + +0.1
611,144 - +0.6
611,144 - -1.1
611,144 - +1.4
611,293 + LRK54_RS02855 0.18 -1.5
611,294 - LRK54_RS02855 0.18 -0.4
611,294 - LRK54_RS02855 0.18 -0.1
611,294 - LRK54_RS02855 0.18 -1.3
611,294 - LRK54_RS02855 0.18 -0.7
611,294 - LRK54_RS02855 0.18 +0.3
611,294 - LRK54_RS02855 0.18 +0.9
611,311 + LRK54_RS02855 0.19 -0.7
611,311 + LRK54_RS02855 0.19 +0.4
611,311 + LRK54_RS02855 0.19 -0.4
611,390 - LRK54_RS02855 0.24 -2.1
611,390 - LRK54_RS02855 0.24 -1.0
611,390 - LRK54_RS02855 0.24 +0.4
611,474 - LRK54_RS02855 0.29 -0.6
611,570 - LRK54_RS02855 0.35 +0.1
611,570 - LRK54_RS02855 0.35 -0.4
611,570 - LRK54_RS02855 0.35 -0.1
611,575 + LRK54_RS02855 0.35 -0.6
611,576 - LRK54_RS02855 0.35 -0.9
611,626 + LRK54_RS02855 0.38 -0.4
611,626 + LRK54_RS02855 0.38 -0.9
611,627 - LRK54_RS02855 0.38 -1.5
611,627 - LRK54_RS02855 0.38 +0.4
611,750 + LRK54_RS02855 0.46 -0.4
611,806 + LRK54_RS02855 0.49 -0.1
611,806 + LRK54_RS02855 0.49 +0.9
611,807 - LRK54_RS02855 0.49 -1.1
611,833 + LRK54_RS02855 0.51 +2.4
611,833 + LRK54_RS02855 0.51 -1.1
611,833 + LRK54_RS02855 0.51 -1.5
611,833 + LRK54_RS02855 0.51 +0.1
611,833 + LRK54_RS02855 0.51 +0.4
611,833 + LRK54_RS02855 0.51 +2.4
611,833 + LRK54_RS02855 0.51 -0.4
611,834 - LRK54_RS02855 0.51 -0.4
611,834 - LRK54_RS02855 0.51 -0.1
611,834 - LRK54_RS02855 0.51 -0.6
611,834 - LRK54_RS02855 0.51 +1.4
611,834 - LRK54_RS02855 0.51 -0.4
611,834 - LRK54_RS02855 0.51 +1.4
611,835 + LRK54_RS02855 0.51 -0.9
611,853 + LRK54_RS02855 0.52 +0.4
611,853 + LRK54_RS02855 0.52 -0.1
611,853 + LRK54_RS02855 0.52 -0.4
611,853 + LRK54_RS02855 0.52 -1.5
611,854 - LRK54_RS02855 0.52 -0.4
611,854 - LRK54_RS02855 0.52 -0.1
611,995 + LRK54_RS02855 0.61 -0.9
611,996 - LRK54_RS02855 0.61 -1.0
612,103 + LRK54_RS02855 0.68 -2.1
612,103 + LRK54_RS02855 0.68 -0.1
612,103 + LRK54_RS02855 0.68 -0.6
612,104 - LRK54_RS02855 0.68 +0.1
612,104 - LRK54_RS02855 0.68 +2.4
612,104 - LRK54_RS02855 0.68 +1.4
612,207 + LRK54_RS02855 0.74 -0.6
612,207 + LRK54_RS02855 0.74 +1.4
612,208 - LRK54_RS02855 0.74 -1.3
612,244 + LRK54_RS02855 0.76 -1.8
612,394 + LRK54_RS02855 0.86 +0.9
612,394 + LRK54_RS02855 0.86 +0.4
612,395 - LRK54_RS02855 0.86 -0.9
612,395 - LRK54_RS02855 0.86 -0.7
612,395 - LRK54_RS02855 0.86 -1.7
612,463 + LRK54_RS02855 0.90 +0.1
612,463 + LRK54_RS02855 0.90 +0.4
612,464 - LRK54_RS02855 0.90 -1.3
612,484 + -0.6
612,485 - -0.7
612,521 + -1.6
612,521 + +0.0
612,521 + +0.1
612,522 - -0.3
612,522 - +0.0
612,522 - -0.6
612,756 + +1.2
612,757 - -0.0
612,757 - -0.8
612,757 - -1.0
612,757 - +0.1
613,074 + -0.0
613,074 + -0.0
613,074 + -0.9
613,074 + +0.8
613,074 + +0.9
613,074 + +0.2
613,074 + -0.4
613,074 + -0.3
613,074 + -1.4
613,075 - +0.6
613,075 - -0.7
613,075 - +0.3
613,075 - -0.4
613,075 - +4.3
613,075 - +0.9
613,075 - -1.0
613,075 - -0.5
613,075 - -1.7
613,086 - -0.7
613,086 - -0.9
613,173 + -1.2
613,173 + -0.4
613,173 + +1.0
613,173 + +0.4
613,173 + -0.4
613,174 - +1.4
613,174 - -0.6
613,174 - +0.1
613,174 - +2.4
613,174 - +1.1
613,174 - +1.4
613,323 + +0.3
613,323 + -0.9
613,323 + +0.6
613,323 + +0.4
613,323 + -0.5
613,323 + -1.0
613,323 + -0.5
613,323 + +0.5
613,323 + -0.4
613,323 + +0.9
613,323 + +0.1
613,323 + +0.6
613,324 - -0.6
613,324 - -0.5
613,324 - +2.2
613,324 - +0.1
613,324 - -1.3
613,324 - +0.2
613,324 - -0.5
613,324 - -0.2
613,324 - +0.5
613,324 - +0.2
613,324 - -1.1
613,324 - +0.4
613,393 + -1.4
613,393 + +0.7
613,394 - +0.3
613,394 - +0.4
613,394 - -0.3
613,394 - +0.6
613,567 + LRK54_RS02860 0.42 +0.3

Or see this region's nucleotide sequence