Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02490 and LRK54_RS02495 are separated by 95 nucleotides LRK54_RS02495 and LRK54_RS02500 are separated by 44 nucleotides LRK54_RS02500 and LRK54_RS02505 are separated by 35 nucleotides
LRK54_RS02490: LRK54_RS02490 - EAL domain-containing protein, at 539,465 to 541,507
_RS02490
LRK54_RS02495: LRK54_RS02495 - 50S ribosomal protein L19, at 541,603 to 541,995
_RS02495
LRK54_RS02500: LRK54_RS02500 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 542,040 to 542,813
_RS02500
LRK54_RS02505: LRK54_RS02505 - ribosome maturation factor RimM, at 542,849 to 543,364
_RS02505
Position (kb) 541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 540.783 kb on - strand, within LRK54_RS02490 at 540.783 kb on - strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.833 kb on + strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.834 kb on - strand, within LRK54_RS02490 at 540.875 kb on + strand, within LRK54_RS02490 at 540.875 kb on + strand, within LRK54_RS02490 at 540.876 kb on - strand, within LRK54_RS02490 at 540.876 kb on - strand, within LRK54_RS02490 at 540.876 kb on - strand, within LRK54_RS02490 at 540.984 kb on + strand, within LRK54_RS02490 at 540.985 kb on - strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.295 kb on + strand, within LRK54_RS02490 at 541.296 kb on - strand, within LRK54_RS02490 at 541.296 kb on - strand, within LRK54_RS02490 at 541.296 kb on - strand, within LRK54_RS02490 at 541.296 kb on - strand, within LRK54_RS02490 at 541.296 kb on - strand, within LRK54_RS02490 at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.316 kb on + strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.317 kb on - strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.432 kb on + strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.433 kb on - strand at 541.505 kb on + strand at 541.505 kb on + strand at 541.505 kb on + strand at 541.506 kb on - strand at 541.506 kb on - strand at 541.604 kb on + strand at 541.604 kb on + strand at 541.605 kb on - strand at 541.605 kb on - strand at 541.605 kb on - strand at 541.605 kb on - strand at 541.605 kb on - strand at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.700 kb on + strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand, within LRK54_RS02495 at 541.701 kb on - strand at 541.701 kb on - strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.703 kb on + strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495 at 541.704 kb on - strand, within LRK54_RS02495
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM remove 540,783 - LRK54_RS02490 0.65 -0.0 540,783 - LRK54_RS02490 0.65 +0.1 540,833 + LRK54_RS02490 0.67 +1.8 540,833 + LRK54_RS02490 0.67 +1.1 540,833 + LRK54_RS02490 0.67 +0.1 540,833 + LRK54_RS02490 0.67 -0.1 540,833 + LRK54_RS02490 0.67 -0.0 540,833 + LRK54_RS02490 0.67 -1.5 540,833 + LRK54_RS02490 0.67 +0.5 540,833 + LRK54_RS02490 0.67 -0.1 540,833 + LRK54_RS02490 0.67 -0.2 540,833 + LRK54_RS02490 0.67 +0.4 540,833 + LRK54_RS02490 0.67 -0.9 540,834 - LRK54_RS02490 0.67 -1.2 540,834 - LRK54_RS02490 0.67 +0.6 540,834 - LRK54_RS02490 0.67 -1.6 540,834 - LRK54_RS02490 0.67 -0.1 540,834 - LRK54_RS02490 0.67 -0.9 540,834 - LRK54_RS02490 0.67 -0.7 540,834 - LRK54_RS02490 0.67 +0.2 540,875 + LRK54_RS02490 0.69 -0.7 540,875 + LRK54_RS02490 0.69 +0.1 540,876 - LRK54_RS02490 0.69 -0.4 540,876 - LRK54_RS02490 0.69 +0.3 540,876 - LRK54_RS02490 0.69 +0.7 540,984 + LRK54_RS02490 0.74 -0.2 540,985 - LRK54_RS02490 0.74 +1.2 541,295 + LRK54_RS02490 0.90 -0.6 541,295 + LRK54_RS02490 0.90 +0.5 541,295 + LRK54_RS02490 0.90 +0.5 541,295 + LRK54_RS02490 0.90 +0.0 541,295 + LRK54_RS02490 0.90 -0.4 541,295 + LRK54_RS02490 0.90 -0.2 541,295 + LRK54_RS02490 0.90 -0.2 541,296 - LRK54_RS02490 0.90 +0.5 541,296 - LRK54_RS02490 0.90 -0.4 541,296 - LRK54_RS02490 0.90 -0.4 541,296 - LRK54_RS02490 0.90 -0.2 541,296 - LRK54_RS02490 0.90 -0.1 541,316 + +0.2 541,316 + -0.6 541,316 + +0.3 541,316 + -0.5 541,316 + -0.3 541,316 + +0.5 541,316 + -0.3 541,316 + +0.2 541,316 + -0.3 541,316 + -0.9 541,316 + +0.4 541,316 + +0.2 541,316 + +0.5 541,316 + +0.9 541,316 + +0.2 541,316 + +0.1 541,316 + -0.2 541,316 + -0.5 541,316 + -0.2 541,316 + -0.2 541,316 + +0.0 541,316 + +0.0 541,316 + +0.9 541,316 + +0.6 541,317 - +0.3 541,317 - -0.5 541,317 - +0.6 541,317 - +1.1 541,317 - +0.6 541,317 - +0.1 541,317 - +1.7 541,317 - +0.8 541,317 - +0.2 541,317 - -1.2 541,317 - -0.2 541,317 - +0.3 541,317 - +1.0 541,317 - -0.4 541,317 - -2.0 541,317 - -0.1 541,317 - -0.4 541,317 - -0.0 541,432 + +0.1 541,432 + -2.0 541,432 + +1.2 541,432 + +0.2 541,432 + -0.2 541,432 + +0.2 541,432 + -0.6 541,432 + -0.5 541,432 + -0.8 541,432 + -0.8 541,433 - -1.7 541,433 - +2.4 541,433 - +0.9 541,433 - -2.7 541,433 - -0.6 541,433 - -0.2 541,433 - +0.8 541,433 - +0.8 541,433 - +0.3 541,433 - +0.2 541,433 - -0.2 541,433 - -0.6 541,505 + +1.0 541,505 + -0.2 541,505 + -0.8 541,506 - +0.1 541,506 - +1.3 541,604 + -0.6 541,604 + -0.1 541,605 - +0.0 541,605 - +0.1 541,605 - -0.8 541,605 - -0.0 541,605 - -0.3 541,700 + LRK54_RS02495 0.25 -2.0 541,700 + LRK54_RS02495 0.25 -1.4 541,700 + LRK54_RS02495 0.25 -0.6 541,700 + LRK54_RS02495 0.25 -0.9 541,700 + LRK54_RS02495 0.25 -3.5 541,700 + LRK54_RS02495 0.25 -1.3 541,700 + LRK54_RS02495 0.25 -1.3 541,700 + LRK54_RS02495 0.25 -1.0 541,700 + LRK54_RS02495 0.25 -2.2 541,700 + LRK54_RS02495 0.25 -2.0 541,700 + LRK54_RS02495 0.25 -2.8 541,700 + LRK54_RS02495 0.25 -1.5 541,701 - LRK54_RS02495 0.25 -2.1 541,701 - LRK54_RS02495 0.25 -0.4 541,701 - LRK54_RS02495 0.25 -3.1 541,701 - LRK54_RS02495 0.25 -1.5 541,701 - LRK54_RS02495 0.25 -1.9 541,701 - LRK54_RS02495 0.25 -0.6 541,701 - LRK54_RS02495 0.25 -0.9 541,701 - -0.4 541,701 - LRK54_RS02495 0.25 -1.6 541,703 + LRK54_RS02495 0.25 -2.2 541,703 + LRK54_RS02495 0.25 -0.8 541,703 + LRK54_RS02495 0.25 +0.4 541,703 + LRK54_RS02495 0.25 +0.1 541,703 + LRK54_RS02495 0.25 -0.0 541,703 + LRK54_RS02495 0.25 -0.2 541,703 + LRK54_RS02495 0.25 -1.8 541,704 - LRK54_RS02495 0.26 -2.3 541,704 - LRK54_RS02495 0.26 -2.3 541,704 - LRK54_RS02495 0.26 -0.2 541,704 - LRK54_RS02495 0.26 -1.8 541,704 - LRK54_RS02495 0.26 -1.9 541,704 - LRK54_RS02495 0.26 -1.6 541,704 - LRK54_RS02495 0.26 -1.3 541,704 - LRK54_RS02495 0.26 -0.9 541,704 - LRK54_RS02495 0.26 -0.4
Or see this region's nucleotide sequence