Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS01285

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS01275 and LRK54_RS01280 are separated by 97 nucleotidesLRK54_RS01280 and LRK54_RS01285 overlap by 4 nucleotidesLRK54_RS01285 and LRK54_RS01290 are separated by 34 nucleotides LRK54_RS01275: LRK54_RS01275 - tRNA-Ser, at 278,345 to 278,456 _RS01275 LRK54_RS01280: LRK54_RS01280 - MBL fold metallo-hydrolase, at 278,554 to 279,312 _RS01280 LRK54_RS01285: LRK54_RS01285 - 3-deoxy-D-manno-octulosonic acid kinase, at 279,309 to 280,040 _RS01285 LRK54_RS01290: LRK54_RS01290 - glycosyltransferase family 9 protein, at 280,075 to 281,118 _RS01290 Position (kb) 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2 3at 278.406 kb on - strand, within LRK54_RS01275at 278.406 kb on - strand, within LRK54_RS01275at 278.406 kb on - strand, within LRK54_RS01275at 278.413 kb on - strand, within LRK54_RS01275at 278.413 kb on - strand, within LRK54_RS01275at 278.413 kb on - strand, within LRK54_RS01275at 278.413 kb on - strand, within LRK54_RS01275at 278.413 kb on - strand, within LRK54_RS01275at 278.413 kb on - strand, within LRK54_RS01275at 278.413 kb on - strand, within LRK54_RS01275at 278.413 kb on - strand, within LRK54_RS01275at 278.413 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.415 kb on - strand, within LRK54_RS01275at 278.494 kb on - strandat 278.494 kb on - strandat 278.494 kb on - strandat 278.494 kb on - strandat 278.530 kb on - strandat 278.530 kb on - strandat 278.530 kb on - strandat 278.530 kb on - strandat 278.666 kb on + strand, within LRK54_RS01280at 278.672 kb on + strand, within LRK54_RS01280at 278.672 kb on + strand, within LRK54_RS01280at 278.673 kb on - strand, within LRK54_RS01280at 278.673 kb on - strand, within LRK54_RS01280at 278.673 kb on - strand, within LRK54_RS01280at 278.706 kb on - strand, within LRK54_RS01280at 278.878 kb on + strand, within LRK54_RS01280at 278.878 kb on + strand, within LRK54_RS01280at 278.879 kb on - strand, within LRK54_RS01280at 279.179 kb on + strand, within LRK54_RS01280at 279.299 kb on - strandat 279.323 kb on + strandat 279.323 kb on + strandat 279.323 kb on + strandat 279.323 kb on + strandat 279.324 kb on - strandat 279.324 kb on - strandat 279.324 kb on - strandat 279.337 kb on + strandat 279.338 kb on - strandat 279.338 kb on - strandat 279.490 kb on + strand, within LRK54_RS01285at 279.490 kb on + strand, within LRK54_RS01285at 279.490 kb on + strand, within LRK54_RS01285at 279.491 kb on - strand, within LRK54_RS01285at 279.491 kb on - strand, within LRK54_RS01285at 279.491 kb on - strand, within LRK54_RS01285at 279.674 kb on + strand, within LRK54_RS01285at 279.674 kb on + strand, within LRK54_RS01285at 279.676 kb on + strand, within LRK54_RS01285at 279.676 kb on + strand, within LRK54_RS01285at 279.676 kb on + strand, within LRK54_RS01285at 279.676 kb on + strand, within LRK54_RS01285at 279.676 kb on + strand, within LRK54_RS01285at 279.676 kb on + strand, within LRK54_RS01285at 279.676 kb on + strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.677 kb on - strand, within LRK54_RS01285at 279.753 kb on + strand, within LRK54_RS01285at 279.753 kb on + strand, within LRK54_RS01285at 279.753 kb on + strand, within LRK54_RS01285at 279.753 kb on + strand, within LRK54_RS01285at 279.753 kb on + strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.754 kb on - strand, within LRK54_RS01285at 279.802 kb on + strand, within LRK54_RS01285at 279.845 kb on - strand, within LRK54_RS01285at 279.940 kb on + strand, within LRK54_RS01285at 279.940 kb on + strand, within LRK54_RS01285at 279.941 kb on - strand, within LRK54_RS01285at 279.978 kb on + strandat 279.979 kb on - strandat 279.979 kb on - strandat 280.063 kb on + strandat 280.063 kb on + strandat 280.064 kb on - strandat 280.064 kb on - strandat 280.064 kb on - strandat 280.064 kb on - strandat 280.064 kb on - strandat 280.397 kb on - strand, within LRK54_RS01290at 280.526 kb on + strand, within LRK54_RS01290at 280.526 kb on + strand, within LRK54_RS01290at 280.527 kb on - strand, within LRK54_RS01290at 280.655 kb on - strand, within LRK54_RS01290at 280.838 kb on + strand, within LRK54_RS01290at 280.838 kb on + strand, within LRK54_RS01290at 280.838 kb on + strand, within LRK54_RS01290at 280.838 kb on + strand, within LRK54_RS01290at 280.838 kb on + strand, within LRK54_RS01290at 280.838 kb on + strand, within LRK54_RS01290at 280.838 kb on + strand, within LRK54_RS01290at 280.838 kb on + strand, within LRK54_RS01290at 280.838 kb on + strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.839 kb on - strand, within LRK54_RS01290at 280.936 kb on + strand, within LRK54_RS01290at 280.936 kb on + strand, within LRK54_RS01290at 280.936 kb on + strand, within LRK54_RS01290at 280.937 kb on - strand, within LRK54_RS01290at 280.937 kb on - strand, within LRK54_RS01290at 280.966 kb on + strand, within LRK54_RS01290at 280.966 kb on + strand, within LRK54_RS01290at 280.966 kb on + strand, within LRK54_RS01290at 280.966 kb on + strand, within LRK54_RS01290at 280.966 kb on + strand, within LRK54_RS01290at 280.966 kb on + strand, within LRK54_RS01290at 280.966 kb on + strand, within LRK54_RS01290at 280.966 kb on + strand, within LRK54_RS01290at 280.966 kb on + strand, within LRK54_RS01290at 280.966 kb on + strand, within LRK54_RS01290at 280.967 kb on - strand, within LRK54_RS01290at 280.967 kb on - strand, within LRK54_RS01290at 280.967 kb on - strand, within LRK54_RS01290at 280.967 kb on - strand, within LRK54_RS01290at 280.967 kb on - strand, within LRK54_RS01290at 280.967 kb on - strand, within LRK54_RS01290at 280.967 kb on - strand, within LRK54_RS01290at 280.967 kb on - strand, within LRK54_RS01290at 280.967 kb on - strand, within LRK54_RS01290at 280.967 kb on - strand, within LRK54_RS01290at 280.987 kb on + strand, within LRK54_RS01290at 280.987 kb on + strand, within LRK54_RS01290at 280.987 kb on + strand, within LRK54_RS01290at 280.987 kb on + strand, within LRK54_RS01290at 280.987 kb on + strand, within LRK54_RS01290at 280.987 kb on + strand, within LRK54_RS01290at 280.987 kb on + strand, within LRK54_RS01290at 280.987 kb on + strand, within LRK54_RS01290at 280.987 kb on + strand, within LRK54_RS01290at 280.988 kb on - strand, within LRK54_RS01290at 280.988 kb on - strand, within LRK54_RS01290at 280.988 kb on - strand, within LRK54_RS01290at 280.988 kb on - strand, within LRK54_RS01290at 280.988 kb on - strand, within LRK54_RS01290at 280.988 kb on - strand, within LRK54_RS01290at 280.988 kb on - strand, within LRK54_RS01290

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM
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278,406 - LRK54_RS01275 0.54 -0.1
278,406 - LRK54_RS01275 0.54 -0.4
278,406 - LRK54_RS01275 0.54 +2.5
278,413 - LRK54_RS01275 0.61 +0.6
278,413 - LRK54_RS01275 0.61 +0.5
278,413 - LRK54_RS01275 0.61 +1.7
278,413 - LRK54_RS01275 0.61 -1.1
278,413 - LRK54_RS01275 0.61 +0.7
278,413 - LRK54_RS01275 0.61 -0.3
278,413 - LRK54_RS01275 0.61 +0.4
278,413 - LRK54_RS01275 0.61 -0.6
278,413 - LRK54_RS01275 0.61 +0.3
278,415 - LRK54_RS01275 0.62 +0.9
278,415 - LRK54_RS01275 0.62 +0.5
278,415 - LRK54_RS01275 0.62 +0.5
278,415 - LRK54_RS01275 0.62 +1.5
278,415 - LRK54_RS01275 0.62 -0.2
278,415 - LRK54_RS01275 0.62 +0.3
278,415 - LRK54_RS01275 0.62 +0.5
278,415 - LRK54_RS01275 0.62 +0.1
278,415 - LRK54_RS01275 0.62 +2.0
278,415 - LRK54_RS01275 0.62 +0.4
278,415 - LRK54_RS01275 0.62 -0.0
278,415 - LRK54_RS01275 0.62 +0.5
278,415 - LRK54_RS01275 0.62 -0.0
278,415 - LRK54_RS01275 0.62 -1.1
278,415 - LRK54_RS01275 0.62 +0.0
278,415 - LRK54_RS01275 0.62 -0.2
278,415 - LRK54_RS01275 0.62 -1.3
278,415 - LRK54_RS01275 0.62 -1.0
278,415 - LRK54_RS01275 0.62 +0.6
278,415 - LRK54_RS01275 0.62 -0.1
278,415 - LRK54_RS01275 0.62 +1.3
278,415 - LRK54_RS01275 0.62 -1.1
278,415 - LRK54_RS01275 0.62 +0.7
278,415 - LRK54_RS01275 0.62 +1.0
278,415 - LRK54_RS01275 0.62 +0.5
278,415 - LRK54_RS01275 0.62 +0.5
278,494 - +0.1
278,494 - +0.8
278,494 - -0.5
278,494 - +1.2
278,530 - +0.1
278,530 - -0.2
278,530 - -1.1
278,530 - +2.5
278,666 + LRK54_RS01280 0.15 -0.1
278,672 + LRK54_RS01280 0.16 +0.5
278,672 + LRK54_RS01280 0.16 -0.4
278,673 - LRK54_RS01280 0.16 +1.5
278,673 - LRK54_RS01280 0.16 -0.4
278,673 - LRK54_RS01280 0.16 -0.4
278,706 - LRK54_RS01280 0.20 -0.5
278,878 + LRK54_RS01280 0.43 -0.1
278,878 + LRK54_RS01280 0.43 -1.0
278,879 - LRK54_RS01280 0.43 -0.7
279,179 + LRK54_RS01280 0.82 +1.5
279,299 - +3.5
279,323 + -1.7
279,323 + -1.7
279,323 + -0.5
279,323 + -0.1
279,324 - +1.9
279,324 - +1.7
279,324 - -0.4
279,337 + -0.1
279,338 - +0.5
279,338 - -0.9
279,490 + LRK54_RS01285 0.25 -0.9
279,490 + LRK54_RS01285 0.25 +0.5
279,490 + LRK54_RS01285 0.25 -1.0
279,491 - LRK54_RS01285 0.25 -0.5
279,491 - LRK54_RS01285 0.25 +0.9
279,491 - LRK54_RS01285 0.25 -0.2
279,674 + LRK54_RS01285 0.50 -0.7
279,674 + LRK54_RS01285 0.50 -1.5
279,676 + LRK54_RS01285 0.50 -1.0
279,676 + LRK54_RS01285 0.50 +0.1
279,676 + LRK54_RS01285 0.50 -0.1
279,676 + LRK54_RS01285 0.50 -0.1
279,676 + LRK54_RS01285 0.50 -0.5
279,676 + LRK54_RS01285 0.50 -0.9
279,676 + LRK54_RS01285 0.50 +0.5
279,677 - LRK54_RS01285 0.50 +0.9
279,677 - LRK54_RS01285 0.50 -2.4
279,677 - LRK54_RS01285 0.50 -1.2
279,677 - LRK54_RS01285 0.50 -0.5
279,677 - LRK54_RS01285 0.50 -0.5
279,677 - LRK54_RS01285 0.50 +0.1
279,677 - LRK54_RS01285 0.50 +0.8
279,677 - LRK54_RS01285 0.50 -1.5
279,677 - LRK54_RS01285 0.50 -0.5
279,677 - LRK54_RS01285 0.50 +0.1
279,677 - LRK54_RS01285 0.50 +0.9
279,677 - LRK54_RS01285 0.50 -0.1
279,677 - LRK54_RS01285 0.50 -0.7
279,677 - LRK54_RS01285 0.50 -0.5
279,677 - LRK54_RS01285 0.50 -0.7
279,753 + LRK54_RS01285 0.61 +0.1
279,753 + LRK54_RS01285 0.61 +0.9
279,753 + LRK54_RS01285 0.61 -0.1
279,753 + LRK54_RS01285 0.61 -2.2
279,753 + LRK54_RS01285 0.61 +0.3
279,754 - LRK54_RS01285 0.61 +1.5
279,754 - LRK54_RS01285 0.61 -2.1
279,754 - LRK54_RS01285 0.61 -1.1
279,754 - LRK54_RS01285 0.61 -1.9
279,754 - LRK54_RS01285 0.61 +0.0
279,754 - LRK54_RS01285 0.61 +0.9
279,754 - LRK54_RS01285 0.61 -1.1
279,754 - LRK54_RS01285 0.61 -0.9
279,754 - LRK54_RS01285 0.61 -0.7
279,754 - LRK54_RS01285 0.61 +2.5
279,754 - LRK54_RS01285 0.61 -0.7
279,802 + LRK54_RS01285 0.67 +1.2
279,845 - LRK54_RS01285 0.73 +0.3
279,940 + LRK54_RS01285 0.86 -0.9
279,940 + LRK54_RS01285 0.86 -2.0
279,941 - LRK54_RS01285 0.86 +0.5
279,978 + -1.6
279,979 - -0.4
279,979 - -0.5
280,063 + +0.1
280,063 + +0.7
280,064 - -0.5
280,064 - +0.8
280,064 - -0.4
280,064 - -1.2
280,064 - +0.7
280,397 - LRK54_RS01290 0.31 -1.1
280,526 + LRK54_RS01290 0.43 -1.0
280,526 + LRK54_RS01290 0.43 +0.6
280,527 - LRK54_RS01290 0.43 -0.3
280,655 - LRK54_RS01290 0.56 +0.4
280,838 + LRK54_RS01290 0.73 -0.5
280,838 + LRK54_RS01290 0.73 +0.0
280,838 + LRK54_RS01290 0.73 -0.5
280,838 + LRK54_RS01290 0.73 +0.2
280,838 + LRK54_RS01290 0.73 -2.1
280,838 + LRK54_RS01290 0.73 +2.0
280,838 + LRK54_RS01290 0.73 -1.4
280,838 + LRK54_RS01290 0.73 -0.4
280,838 + LRK54_RS01290 0.73 +1.1
280,839 - LRK54_RS01290 0.73 -0.6
280,839 - LRK54_RS01290 0.73 -0.9
280,839 - LRK54_RS01290 0.73 -0.9
280,839 - LRK54_RS01290 0.73 +0.6
280,839 - LRK54_RS01290 0.73 -0.3
280,839 - LRK54_RS01290 0.73 +0.3
280,839 - LRK54_RS01290 0.73 +1.2
280,839 - LRK54_RS01290 0.73 +0.9
280,839 - LRK54_RS01290 0.73 -0.7
280,839 - LRK54_RS01290 0.73 -0.7
280,839 - LRK54_RS01290 0.73 +1.0
280,936 + LRK54_RS01290 0.82 -0.1
280,936 + LRK54_RS01290 0.82 -0.2
280,936 + LRK54_RS01290 0.82 -0.5
280,937 - LRK54_RS01290 0.83 -0.3
280,937 - LRK54_RS01290 0.83 -0.7
280,966 + LRK54_RS01290 0.85 +1.3
280,966 + LRK54_RS01290 0.85 -0.5
280,966 + LRK54_RS01290 0.85 -1.5
280,966 + LRK54_RS01290 0.85 -1.6
280,966 + LRK54_RS01290 0.85 +0.5
280,966 + LRK54_RS01290 0.85 -0.9
280,966 + LRK54_RS01290 0.85 +0.6
280,966 + LRK54_RS01290 0.85 +1.9
280,966 + LRK54_RS01290 0.85 -0.5
280,966 + LRK54_RS01290 0.85 +1.5
280,967 - LRK54_RS01290 0.85 +0.6
280,967 - LRK54_RS01290 0.85 -0.1
280,967 - LRK54_RS01290 0.85 +1.3
280,967 - LRK54_RS01290 0.85 +0.2
280,967 - LRK54_RS01290 0.85 +0.1
280,967 - LRK54_RS01290 0.85 -1.1
280,967 - LRK54_RS01290 0.85 +0.1
280,967 - LRK54_RS01290 0.85 -0.4
280,967 - LRK54_RS01290 0.85 -0.5
280,967 - LRK54_RS01290 0.85 -0.6
280,987 + LRK54_RS01290 0.87 -1.8
280,987 + LRK54_RS01290 0.87 +0.6
280,987 + LRK54_RS01290 0.87 +0.3
280,987 + LRK54_RS01290 0.87 -0.5
280,987 + LRK54_RS01290 0.87 +1.3
280,987 + LRK54_RS01290 0.87 +1.7
280,987 + LRK54_RS01290 0.87 +0.5
280,987 + LRK54_RS01290 0.87 -0.1
280,987 + LRK54_RS01290 0.87 -0.5
280,988 - LRK54_RS01290 0.87 -0.0
280,988 - LRK54_RS01290 0.87 +0.5
280,988 - LRK54_RS01290 0.87 +1.1
280,988 - LRK54_RS01290 0.87 +1.7
280,988 - LRK54_RS01290 0.87 +0.5
280,988 - LRK54_RS01290 0.87 -0.2
280,988 - LRK54_RS01290 0.87 +1.3

Or see this region's nucleotide sequence